Wall clock time and date at job start Tue Mar 31 2020 22:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46997 * 2 1 4 4 O 1.42900 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47399 * 119.99448 * 2 1 3 6 6 N 1.46499 * 109.46873 * 300.00345 * 5 2 1 7 7 C 1.34782 * 119.99630 * 179.97438 * 6 5 2 8 8 O 1.21546 * 120.00336 * 0.02562 * 7 6 5 9 9 C 1.47883 * 119.99905 * 180.02562 * 7 6 5 10 10 C 1.39927 * 120.02686 * 359.71973 * 9 7 6 11 11 C 1.38324 * 120.35903 * 179.74290 * 10 9 7 12 12 C 1.37757 * 120.41412 * 0.56323 * 11 10 9 13 13 C 1.40755 * 120.03581 * 359.69703 * 12 11 10 14 14 C 1.41437 * 120.17761 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99589 * 24.43511 * 14 13 12 16 16 C 1.39940 * 120.00135 * 204.44113 * 14 13 12 17 17 N 1.30827 * 119.99718 * 17.87626 * 16 14 13 18 18 Si 1.86803 * 119.99811 * 197.87979 * 16 14 13 19 19 H 1.48496 * 109.46822 * 59.99861 * 18 16 14 20 20 H 1.48496 * 109.46674 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47017 * 299.99802 * 18 16 14 22 22 C 1.38999 * 120.02550 * 180.02562 * 9 7 6 23 23 C 1.50697 * 109.47478 * 239.99814 * 2 1 3 24 24 C 1.38233 * 119.99707 * 59.99515 * 23 2 1 25 25 C 1.38238 * 119.99931 * 180.02562 * 24 23 2 26 26 C 1.38238 * 119.99626 * 359.96726 * 25 24 23 27 27 C 1.38232 * 120.00432 * 0.26771 * 26 25 24 28 28 C 1.38232 * 120.00187 * 240.02075 * 23 2 1 29 29 H 1.09003 * 109.46678 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46751 * 300.00102 * 1 2 3 31 31 H 1.09000 * 109.47018 * 60.00538 * 1 2 3 32 32 H 1.09000 * 109.46797 * 299.99597 * 3 2 1 33 33 H 1.08997 * 109.47346 * 59.99550 * 3 2 1 34 34 H 0.96697 * 114.00235 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.46532 * 59.99966 * 5 2 1 36 36 H 1.08988 * 109.47360 * 180.02562 * 5 2 1 37 37 H 0.97000 * 120.00752 * 0.02562 * 6 5 2 38 38 H 1.08002 * 119.81712 * 0.02562 * 10 9 7 39 39 H 1.08000 * 119.79312 * 180.28305 * 11 10 9 40 40 H 1.07997 * 119.98371 * 179.72066 * 12 11 10 41 41 H 0.97004 * 119.99274 * 179.97438 * 17 16 14 42 42 H 1.07994 * 120.19881 * 359.95457 * 22 9 7 43 43 H 1.07998 * 120.00542 * 0.02562 * 24 23 2 44 44 H 1.07997 * 120.00449 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.99713 * 180.02562 * 26 25 24 46 46 H 1.08000 * 120.00399 * 179.73424 * 27 26 25 47 47 H 1.08009 * 119.99723 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 0.0006 5 6 2.0401 -0.7211 1.2493 6 7 1.5517 -0.0304 2.4454 7 6 1.8770 -0.4911 3.6696 8 8 2.5758 -1.4793 3.7812 9 6 1.3835 0.2057 4.8770 10 6 0.5838 1.3468 4.7492 11 6 0.1141 2.0009 5.8739 12 6 0.4375 1.5437 7.1325 13 6 1.2453 0.4006 7.2809 14 6 1.5787 -0.0717 8.5717 15 1 0.9414 0.1593 9.4124 16 6 2.7343 -0.8382 8.7595 17 7 3.6779 -0.8317 7.8533 18 14 2.9295 -1.8707 10.3039 19 1 1.8257 -2.8611 10.3799 20 1 4.2316 -2.5834 10.2614 21 1 2.8862 -0.9886 11.4978 22 6 1.7191 -0.2686 6.1397 23 6 2.0325 -0.7104 -1.2304 24 6 1.6984 -0.2382 -2.4859 25 6 2.1589 -0.8902 -3.6146 26 6 2.9538 -2.0139 -3.4876 27 6 3.2838 -2.4890 -2.2321 28 6 2.8269 -1.8345 -1.1035 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.8623 2.3260 0.0002 35 1 1.6767 -1.7488 1.2493 36 1 3.1300 -0.7207 1.2495 37 1 0.9937 0.7580 2.3564 38 1 0.3281 1.7162 3.7670 39 1 -0.5063 2.8781 5.7646 40 1 0.0707 2.0624 8.0059 41 1 4.4791 -1.3628 7.9837 42 1 2.3395 -1.1464 6.2431 43 1 1.0778 0.6400 -2.5851 44 1 1.8976 -0.5215 -4.5955 45 1 3.3139 -2.5231 -4.3694 46 1 3.9014 -3.3694 -2.1330 47 1 3.0871 -2.2039 -0.1225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346325851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:10 Heat of formation + Delta-G solvation = -47.960014 kcal Electronic energy + Delta-G solvation = -28743.589739 eV Core-core repulsion = 24855.449514 eV Total energy + Delta-G solvation = -3888.140225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36322 -38.98948 -37.52178 -36.85900 -35.29127 -33.77531 -32.97114 -31.14537 -30.24766 -29.59423 -29.41802 -26.75050 -26.16714 -25.22234 -23.25480 -22.52404 -21.79738 -20.92760 -19.64376 -19.34046 -17.85585 -17.45505 -17.05019 -16.33372 -15.59052 -15.28766 -15.25796 -14.90120 -14.84048 -14.49547 -14.48352 -14.03955 -13.71937 -13.43915 -13.37463 -13.09547 -13.05195 -12.63965 -12.49448 -12.47925 -12.38693 -12.05470 -11.67464 -11.56596 -11.39984 -11.13904 -11.06620 -10.92202 -10.75449 -10.56942 -10.49389 -10.10055 -10.00717 -9.69638 -9.20495 -9.01089 -8.99547 -8.79965 -8.58380 -7.62276 -7.52131 -6.79689 -4.41251 1.26254 1.31560 2.23156 2.82521 3.07847 3.09632 3.16972 3.65848 3.67924 3.89531 3.93158 4.06185 4.37301 4.63543 4.64563 4.79595 4.87623 4.90024 5.01221 5.13559 5.26056 5.31842 5.35032 5.45149 5.58079 5.60189 5.61549 5.76785 5.85160 5.92809 5.94151 5.97346 6.05531 6.15831 6.25972 6.36078 6.41991 6.52768 6.72063 6.88559 6.90874 6.99230 7.02551 7.21652 7.38434 7.52928 7.70138 7.76368 7.93014 8.10832 8.19970 8.50877 8.80396 8.83868 8.99389 10.14853 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.002527 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.569449 B =11077.856945 C =12012.517265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 C 0.089 3.911 4 O -0.561 6.561 5 C 0.135 3.865 6 N -0.734 5.734 7 C 0.564 3.436 8 O -0.546 6.546 9 C -0.126 4.126 10 C -0.220 4.220 11 C -0.097 4.097 12 C -0.213 4.213 13 C 0.099 3.901 14 C -0.460 4.460 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.782 5.782 18 Si 0.911 3.089 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.265 1.265 22 C -0.093 4.093 23 C -0.052 4.052 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.128 4.128 27 C -0.117 4.117 28 C -0.113 4.113 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.378 0.622 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.395 0.605 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.330 2.570 -19.677 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C 0.011 3.989 4 O -0.366 6.366 5 C 0.011 3.989 6 N -0.389 5.389 7 C 0.354 3.646 8 O -0.423 6.423 9 C -0.129 4.129 10 C -0.240 4.240 11 C -0.116 4.116 12 C -0.233 4.233 13 C 0.096 3.904 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.406 5.406 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.190 1.190 22 C -0.113 4.113 23 C -0.052 4.052 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.135 4.135 28 C -0.130 4.130 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.225 0.775 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.231 0.769 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.152 0.848 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.661 1.103 -19.648 19.859 hybrid contribution 0.016 0.674 0.510 0.845 sum -2.645 1.777 -19.139 19.402 Atomic orbital electron populations 1.21873 0.92243 1.03359 1.02345 1.19786 0.95984 0.94384 0.93189 1.22181 0.81974 0.95013 0.99761 1.86532 1.18941 1.33479 1.97612 1.21289 0.99906 0.95317 0.82397 1.45961 1.55033 1.32553 1.05322 1.18815 0.79063 0.83527 0.83176 1.90693 1.38048 1.26675 1.86934 1.19477 1.02876 0.98063 0.92527 1.20295 1.07241 1.00084 0.96356 1.20421 0.99606 0.98463 0.93079 1.21087 1.07832 0.98995 0.95407 1.17604 0.89970 0.89566 0.93235 1.19559 1.06578 1.28196 0.94527 0.90108 1.25973 0.94922 0.95442 0.98296 1.69786 1.05314 1.31590 1.33906 0.86323 0.78451 0.80299 0.81447 1.18715 1.20211 1.18966 1.21646 0.99959 1.00194 0.89475 1.19463 0.97142 0.95244 0.93398 1.20872 1.00603 0.99947 0.91908 1.21052 0.98459 0.96196 0.98211 1.21113 0.99056 0.97046 0.97357 1.21156 0.99879 0.99896 0.92524 1.21253 0.97133 0.95346 0.99316 0.91266 0.91589 0.91929 0.93451 0.93092 0.77525 0.91704 0.90543 0.76858 0.89518 0.88971 0.88650 0.90347 0.84823 0.86458 0.86363 0.86411 0.86118 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.11 37.16 0.30 -1.04 16 2 C -0.03 -0.37 0.45 -155.65 -0.07 -0.44 16 3 C 0.09 0.91 5.56 37.16 0.21 1.11 16 4 O -0.56 -6.54 12.61 -35.23 -0.44 -6.98 16 5 C 0.13 2.00 3.08 -4.04 -0.01 1.99 16 6 N -0.73 -12.26 4.91 -61.24 -0.30 -12.56 16 7 C 0.56 12.50 7.77 -12.31 -0.10 12.40 16 8 O -0.55 -13.95 16.33 5.33 0.09 -13.86 16 9 C -0.13 -2.99 5.87 -105.03 -0.62 -3.61 16 10 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 11 C -0.10 -2.06 10.01 -39.73 -0.40 -2.46 16 12 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 13 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 14 C -0.46 -12.10 9.05 -37.73 -0.34 -12.44 16 15 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 16 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 17 N -0.78 -20.86 10.95 55.55 0.61 -20.25 16 18 Si 0.91 18.87 29.60 -169.99 -5.03 13.84 16 19 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.09 -2.49 8.24 -38.44 -0.32 -2.80 16 23 C -0.05 -0.59 4.41 -104.63 -0.46 -1.05 16 24 C -0.12 -1.14 8.71 -39.58 -0.34 -1.48 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 27 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 28 C -0.11 -1.37 8.98 -39.58 -0.36 -1.72 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.62 6.86 -51.93 -0.36 0.26 16 31 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 32 H 0.05 0.39 7.39 -51.93 -0.38 0.01 16 33 H 0.05 0.51 6.86 -51.93 -0.36 0.16 16 34 H 0.38 2.85 9.12 45.56 0.42 3.27 16 35 H 0.06 1.00 7.51 -51.93 -0.39 0.61 16 36 H 0.08 1.30 7.05 -51.94 -0.37 0.93 16 37 H 0.40 5.67 4.18 -40.82 -0.17 5.50 16 38 H 0.09 1.48 6.38 -52.49 -0.33 1.14 16 39 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 41 H 0.29 7.02 8.30 -40.82 -0.34 6.69 16 42 H 0.13 3.89 5.74 -52.49 -0.30 3.59 16 43 H 0.12 0.94 7.10 -52.49 -0.37 0.57 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 47 H 0.13 1.64 5.90 -52.48 -0.31 1.33 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -31.91 382.25 -9.85 -41.76 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -5.40 Total: 15.20 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -5.13 Total: -22.89 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.31 Total: -32.81 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.36 Total: -20.85 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.91 -9.85 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346325851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.202 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds