Wall clock time and date at job start Tue Mar 31 2020 22:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46997 * 2 1 4 4 O 1.42900 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47399 * 119.99448 * 2 1 3 6 6 N 1.46499 * 109.46873 * 300.00345 * 5 2 1 7 7 C 1.34782 * 119.99630 * 179.97438 * 6 5 2 8 8 O 1.21546 * 120.00336 * 0.02562 * 7 6 5 9 9 C 1.47883 * 119.99905 * 180.02562 * 7 6 5 10 10 C 1.39927 * 120.02686 * 359.71973 * 9 7 6 11 11 C 1.38324 * 120.35903 * 179.74290 * 10 9 7 12 12 C 1.37757 * 120.41412 * 0.56323 * 11 10 9 13 13 C 1.40755 * 120.03581 * 359.69703 * 12 11 10 14 14 C 1.41437 * 120.17761 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99589 * 24.43511 * 14 13 12 16 16 C 1.39940 * 120.00135 * 204.44113 * 14 13 12 17 17 N 1.30827 * 119.99718 * 17.87626 * 16 14 13 18 18 Si 1.86803 * 119.99811 * 197.87979 * 16 14 13 19 19 H 1.48496 * 109.46822 * 59.99861 * 18 16 14 20 20 H 1.48496 * 109.46674 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47017 * 299.99802 * 18 16 14 22 22 C 1.38999 * 120.02550 * 180.02562 * 9 7 6 23 23 C 1.50697 * 109.47478 * 239.99814 * 2 1 3 24 24 C 1.38233 * 119.99707 * 59.99515 * 23 2 1 25 25 C 1.38238 * 119.99931 * 180.02562 * 24 23 2 26 26 C 1.38238 * 119.99626 * 359.96726 * 25 24 23 27 27 C 1.38232 * 120.00432 * 0.26771 * 26 25 24 28 28 C 1.38232 * 120.00187 * 240.02075 * 23 2 1 29 29 H 1.09003 * 109.46678 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46751 * 300.00102 * 1 2 3 31 31 H 1.09000 * 109.47018 * 60.00538 * 1 2 3 32 32 H 1.09000 * 109.46797 * 299.99597 * 3 2 1 33 33 H 1.08997 * 109.47346 * 59.99550 * 3 2 1 34 34 H 0.96697 * 114.00235 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.46532 * 59.99966 * 5 2 1 36 36 H 1.08988 * 109.47360 * 180.02562 * 5 2 1 37 37 H 0.97000 * 120.00752 * 0.02562 * 6 5 2 38 38 H 1.08002 * 119.81712 * 0.02562 * 10 9 7 39 39 H 1.08000 * 119.79312 * 180.28305 * 11 10 9 40 40 H 1.07997 * 119.98371 * 179.72066 * 12 11 10 41 41 H 0.97004 * 119.99274 * 179.97438 * 17 16 14 42 42 H 1.07994 * 120.19881 * 359.95457 * 22 9 7 43 43 H 1.07998 * 120.00542 * 0.02562 * 24 23 2 44 44 H 1.07997 * 120.00449 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.99713 * 180.02562 * 26 25 24 46 46 H 1.08000 * 120.00399 * 179.73424 * 27 26 25 47 47 H 1.08009 * 119.99723 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 0.0006 5 6 2.0401 -0.7211 1.2493 6 7 1.5517 -0.0304 2.4454 7 6 1.8770 -0.4911 3.6696 8 8 2.5758 -1.4793 3.7812 9 6 1.3835 0.2057 4.8770 10 6 0.5838 1.3468 4.7492 11 6 0.1141 2.0009 5.8739 12 6 0.4375 1.5437 7.1325 13 6 1.2453 0.4006 7.2809 14 6 1.5787 -0.0717 8.5717 15 1 0.9414 0.1593 9.4124 16 6 2.7343 -0.8382 8.7595 17 7 3.6779 -0.8317 7.8533 18 14 2.9295 -1.8707 10.3039 19 1 1.8257 -2.8611 10.3799 20 1 4.2316 -2.5834 10.2614 21 1 2.8862 -0.9886 11.4978 22 6 1.7191 -0.2686 6.1397 23 6 2.0325 -0.7104 -1.2304 24 6 1.6984 -0.2382 -2.4859 25 6 2.1589 -0.8902 -3.6146 26 6 2.9538 -2.0139 -3.4876 27 6 3.2838 -2.4890 -2.2321 28 6 2.8269 -1.8345 -1.1035 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.8623 2.3260 0.0002 35 1 1.6767 -1.7488 1.2493 36 1 3.1300 -0.7207 1.2495 37 1 0.9937 0.7580 2.3564 38 1 0.3281 1.7162 3.7670 39 1 -0.5063 2.8781 5.7646 40 1 0.0707 2.0624 8.0059 41 1 4.4791 -1.3628 7.9837 42 1 2.3395 -1.1464 6.2431 43 1 1.0778 0.6400 -2.5851 44 1 1.8976 -0.5215 -4.5955 45 1 3.3139 -2.5231 -4.3694 46 1 3.9014 -3.3694 -2.1330 47 1 3.0871 -2.2039 -0.1225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346325851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:10 Heat of formation + Delta-G solvation = -68.272301 kcal Electronic energy + Delta-G solvation = -28744.470546 eV Core-core repulsion = 24855.449514 eV Total energy + Delta-G solvation = -3889.021032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44739 -40.46109 -38.88156 -38.22647 -36.37690 -35.62064 -34.33868 -32.11770 -31.80160 -31.27684 -30.45608 -27.97430 -27.14502 -26.92217 -24.51071 -23.51201 -22.99477 -22.70847 -21.31512 -20.32247 -19.54545 -18.28874 -18.10750 -17.89092 -17.01626 -16.77479 -16.47941 -16.46473 -15.95585 -15.91159 -15.32598 -15.25828 -15.10838 -15.01470 -14.44704 -14.34848 -14.27286 -14.10081 -13.97180 -13.51976 -13.41256 -13.18564 -12.96429 -12.84516 -12.80939 -12.54261 -12.48809 -12.23646 -12.20753 -11.91457 -11.74014 -11.52261 -11.41340 -11.07249 -10.88211 -10.81430 -10.16975 -9.77800 -9.57505 -9.47502 -9.38727 -8.67253 -6.38745 0.37689 0.49058 0.53281 1.01008 1.35123 1.47216 1.49850 2.09349 2.18147 2.20750 2.78261 2.90346 3.25483 3.47593 3.69645 3.79393 3.89030 4.02239 4.11145 4.16769 4.28803 4.31620 4.41869 4.52854 4.55428 4.58427 4.61480 4.64833 4.71231 4.82679 4.86918 4.93598 4.98040 5.08075 5.14359 5.17996 5.19301 5.25614 5.30875 5.40421 5.51501 5.62072 5.66031 5.71664 5.85996 5.91939 6.05211 6.14842 6.28322 6.49519 6.67265 6.87103 6.91872 6.94583 7.29692 8.29149 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.002527 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.569449 B =11077.856945 C =12012.517265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.025 4.025 3 C 0.086 3.914 4 O -0.588 6.588 5 C 0.139 3.861 6 N -0.705 5.705 7 C 0.558 3.442 8 O -0.592 6.592 9 C -0.137 4.137 10 C -0.197 4.197 11 C -0.094 4.094 12 C -0.217 4.217 13 C 0.066 3.934 14 C -0.497 4.497 15 H 0.085 0.915 16 C 0.028 3.972 17 N -0.826 5.826 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.251 1.251 22 C -0.133 4.133 23 C -0.063 4.063 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.132 4.132 27 C -0.130 4.130 28 C -0.143 4.143 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.394 0.606 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.411 0.589 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.286 0.714 42 H 0.097 0.903 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.141 0.859 46 H 0.127 0.873 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 5.115 -22.220 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C 0.008 3.992 4 O -0.395 6.395 5 C 0.016 3.984 6 N -0.359 5.359 7 C 0.348 3.652 8 O -0.474 6.474 9 C -0.140 4.140 10 C -0.216 4.216 11 C -0.112 4.112 12 C -0.237 4.237 13 C 0.064 3.936 14 C -0.526 4.526 15 H 0.103 0.897 16 C -0.187 4.187 17 N -0.451 5.451 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.174 1.174 22 C -0.154 4.154 23 C -0.063 4.063 24 C -0.134 4.134 25 C -0.138 4.138 26 C -0.150 4.150 27 C -0.148 4.148 28 C -0.161 4.161 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.243 0.757 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.250 0.750 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.128 0.872 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.161 0.839 44 H 0.166 0.834 45 H 0.159 0.841 46 H 0.145 0.855 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.932 3.707 -22.228 23.068 hybrid contribution 0.645 -0.017 1.081 1.259 sum -4.286 3.691 -21.147 21.891 Atomic orbital electron populations 1.21901 0.90468 1.03344 1.03991 1.19771 0.97258 0.94758 0.90797 1.22310 0.81384 0.94080 1.01432 1.86509 1.20025 1.35269 1.97736 1.21303 0.98376 0.95336 0.83405 1.45697 1.53691 1.32352 1.04176 1.18803 0.78822 0.83070 0.84482 1.90670 1.40250 1.28764 1.87692 1.19756 1.03132 0.99137 0.92004 1.20822 1.04203 0.97739 0.98877 1.20932 0.99058 0.99438 0.91733 1.21417 1.06727 0.98005 0.97502 1.17956 0.91301 0.90968 0.93361 1.19848 1.07547 1.30307 0.94931 0.89659 1.26881 0.94170 0.96105 1.01522 1.69898 1.06001 1.32979 1.36234 0.85243 0.78326 0.78536 0.77602 1.18497 1.19798 1.17430 1.21448 1.02059 1.00438 0.91427 1.19536 0.97421 0.95106 0.94276 1.21145 1.00551 1.00621 0.91076 1.21458 0.97373 0.95559 0.99425 1.21437 0.98774 0.97341 0.97402 1.21339 1.00228 1.00321 0.92891 1.21258 0.99033 0.96876 0.98908 0.92206 0.91136 0.89028 0.90328 0.92658 0.75672 0.93003 0.93238 0.75014 0.84601 0.84079 0.87244 0.90366 0.88530 0.83861 0.83442 0.84123 0.85484 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.11 71.98 0.58 -1.65 16 2 C -0.03 -0.53 0.45 -52.92 -0.02 -0.55 16 3 C 0.09 1.49 5.56 71.98 0.40 1.89 16 4 O -0.59 -12.87 12.61 -148.98 -1.88 -14.75 16 5 C 0.14 4.24 3.08 86.38 0.27 4.51 16 6 N -0.71 -23.21 4.91 -465.93 -2.29 -25.49 16 7 C 0.56 25.51 7.77 86.80 0.67 26.19 16 8 O -0.59 -32.42 16.33 -3.86 -0.06 -32.48 16 9 C -0.14 -6.58 5.87 -20.13 -0.12 -6.70 16 10 C -0.20 -7.62 9.55 22.70 0.22 -7.40 16 11 C -0.09 -3.64 10.01 22.18 0.22 -3.42 16 12 C -0.22 -10.08 9.78 22.77 0.22 -9.86 16 13 C 0.07 3.64 5.57 -21.32 -0.12 3.53 16 14 C -0.50 -27.35 9.05 23.47 0.21 -27.13 16 15 H 0.09 4.39 7.91 -2.91 -0.02 4.37 16 16 C 0.03 1.50 5.14 85.26 0.44 1.93 16 17 N -0.83 -47.11 10.95 21.83 0.24 -46.87 16 18 Si 0.98 40.30 29.60 68.60 2.03 42.33 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 22 C -0.13 -7.54 8.24 23.01 0.19 -7.35 16 23 C -0.06 -1.36 4.41 -19.87 -0.09 -1.45 16 24 C -0.12 -1.92 8.71 22.27 0.19 -1.73 16 25 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 26 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 27 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 28 C -0.14 -3.60 8.98 22.27 0.20 -3.40 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.05 6.86 -2.39 -0.02 1.03 16 31 H 0.09 0.96 7.39 -2.39 -0.02 0.94 16 32 H 0.08 0.91 7.39 -2.39 -0.02 0.90 16 33 H 0.06 0.90 6.86 -2.39 -0.02 0.88 16 34 H 0.39 5.25 9.12 -74.06 -0.68 4.57 16 35 H 0.05 1.71 7.51 -2.38 -0.02 1.69 16 36 H 0.05 1.80 7.05 -2.39 -0.02 1.78 16 37 H 0.41 10.63 4.18 -92.71 -0.39 10.25 16 38 H 0.14 3.88 6.38 -2.91 -0.02 3.86 16 39 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 40 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.29 15.13 8.30 -92.71 -0.77 14.36 16 42 H 0.10 6.13 5.74 -2.91 -0.02 6.11 16 43 H 0.14 1.57 7.10 -2.91 -0.02 1.55 16 44 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 45 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 47 H 0.10 3.01 5.90 -2.91 -0.02 2.99 16 Total: -1.00 -76.48 382.25 2.14 -74.34 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: -0.05 Total: 41.68 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 4.14 Total: -38.75 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -2.05 Total: -72.37 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -1.94 Total: -47.23 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -76.48 2.14 -74.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346325851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.067 kcal (2) G-P(sol) polarization free energy of solvation -76.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds