Wall clock time and date at job start Tue Mar 31 2020 22:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46964 * 2 1 4 4 O 1.42895 * 109.47333 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47081 * 240.00452 * 2 1 3 6 6 N 1.46500 * 109.47496 * 59.99514 * 5 2 1 7 7 C 1.34769 * 119.99957 * 179.97438 * 6 5 2 8 8 O 1.21550 * 120.00233 * 359.97438 * 7 6 5 9 9 C 1.47896 * 119.99809 * 180.02562 * 7 6 5 10 10 C 1.39915 * 120.02414 * 359.72549 * 9 7 6 11 11 C 1.38325 * 120.35600 * 179.78563 * 10 9 7 12 12 C 1.37749 * 120.41439 * 0.47208 * 11 10 9 13 13 C 1.40750 * 120.03796 * 359.78492 * 12 11 10 14 14 C 1.41440 * 120.17731 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99795 * 150.17276 * 14 13 12 16 16 C 1.39936 * 119.99873 * 330.17345 * 14 13 12 17 17 N 1.30827 * 119.99629 * 161.73124 * 16 14 13 18 18 Si 1.86793 * 120.00135 * 341.73351 * 16 14 13 19 19 H 1.48504 * 109.47393 * 95.41289 * 18 16 14 20 20 H 1.48505 * 109.47391 * 215.41243 * 18 16 14 21 21 H 1.48510 * 109.47240 * 335.41300 * 18 16 14 22 22 C 1.38990 * 120.02403 * 180.02562 * 9 7 6 23 23 C 1.50697 * 109.47442 * 120.00126 * 2 1 3 24 24 C 1.38230 * 120.00250 * 119.73005 * 23 2 1 25 25 C 1.38235 * 120.00425 * 179.79197 * 24 23 2 26 26 C 1.38238 * 119.99485 * 0.43730 * 25 24 23 27 27 C 1.38236 * 120.00267 * 359.81344 * 26 25 24 28 28 C 1.38234 * 119.99800 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47343 * 60.00175 * 1 2 3 30 30 H 1.09009 * 109.46669 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47176 * 299.99473 * 1 2 3 32 32 H 1.09002 * 109.47155 * 59.99961 * 3 2 1 33 33 H 1.08999 * 109.47494 * 300.00599 * 3 2 1 34 34 H 0.96703 * 114.00318 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.46907 * 179.97438 * 5 2 1 36 36 H 1.09000 * 109.46989 * 299.99650 * 5 2 1 37 37 H 0.97000 * 119.99505 * 0.02562 * 6 5 2 38 38 H 1.08005 * 119.82091 * 0.02562 * 10 9 7 39 39 H 1.08000 * 119.79158 * 180.23548 * 11 10 9 40 40 H 1.07997 * 119.98072 * 179.76519 * 12 11 10 41 41 H 0.97000 * 119.99847 * 179.97438 * 17 16 14 42 42 H 1.08007 * 120.20366 * 359.95437 * 22 9 7 43 43 H 1.07998 * 119.99841 * 359.97438 * 24 23 2 44 44 H 1.07998 * 120.00669 * 180.27491 * 25 24 23 45 45 H 1.08004 * 119.99724 * 179.83897 * 26 25 24 46 46 H 1.07993 * 119.99929 * 180.02562 * 27 26 25 47 47 H 1.08007 * 119.99885 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 2.0400 -0.7211 -1.2493 6 7 1.5516 -0.0306 -2.4455 7 6 1.8776 -0.4907 -3.6695 8 8 2.5772 -1.4784 -3.7811 9 6 1.3850 0.2068 -4.8770 10 6 0.5758 1.3410 -4.7492 11 6 0.1149 2.0013 -5.8740 12 6 0.4390 1.5446 -7.1325 13 6 1.2475 0.4021 -7.2809 14 6 1.5825 -0.0691 -8.5717 15 1 2.5177 -0.5850 -8.7324 16 6 0.7024 0.1333 -9.6406 17 7 1.1344 0.0338 -10.8715 18 14 -1.0893 0.5455 -9.3101 19 1 -1.2745 2.0183 -9.3526 20 1 -1.9428 -0.0908 -10.3454 21 1 -1.4751 0.0366 -7.9693 22 6 1.7205 -0.2676 -6.1397 23 6 2.0324 -0.7104 1.2304 24 6 2.8225 -1.8375 1.1036 25 6 3.2869 -2.4867 2.2322 26 6 2.9537 -2.0139 3.4877 27 6 2.1593 -0.8898 3.6146 28 6 1.6985 -0.2381 2.4860 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.8622 2.3260 -0.0002 35 1 3.1300 -0.7207 -1.2495 36 1 1.6767 -1.7488 -1.2493 37 1 0.9942 0.7583 -2.3564 38 1 0.3128 1.7052 -3.7670 39 1 -0.5061 2.8781 -5.7647 40 1 0.0722 2.0633 -8.0058 41 1 0.5243 0.1737 -11.6124 42 1 2.3415 -1.1452 -6.2431 43 1 3.0794 -2.2093 0.1227 44 1 3.9079 -3.3647 2.1331 45 1 3.3144 -2.5226 4.3695 46 1 1.8993 -0.5203 4.5955 47 1 1.0775 0.6400 2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346325854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:14 Heat of formation + Delta-G solvation = -46.780175 kcal Electronic energy + Delta-G solvation = -28579.858663 eV Core-core repulsion = 24691.769600 eV Total energy + Delta-G solvation = -3888.089063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.47651 -39.21157 -37.68195 -37.12398 -35.42209 -33.75583 -33.15674 -31.22989 -30.67596 -30.05390 -29.68604 -26.90935 -26.28249 -25.13837 -23.46582 -22.69367 -22.08257 -20.70609 -20.06823 -19.49694 -18.05978 -17.55138 -17.14805 -16.44927 -15.78251 -15.69458 -15.42926 -15.01505 -14.88101 -14.68667 -14.57074 -14.17888 -13.74486 -13.69748 -13.52632 -13.32219 -13.10062 -12.76517 -12.76012 -12.58793 -12.48862 -12.18001 -12.02768 -11.68397 -11.63511 -11.46457 -11.06331 -10.99969 -10.79220 -10.66100 -10.55429 -10.18662 -10.02145 -9.73378 -9.43380 -9.14776 -9.08110 -8.87020 -8.77895 -7.87815 -7.77085 -7.01793 -4.56471 1.19373 1.24841 1.92000 2.50114 3.04039 3.16315 3.24693 3.47286 3.60722 3.64253 3.91935 3.95056 4.27407 4.47908 4.53991 4.69605 4.81421 4.82127 4.94320 5.04010 5.17064 5.21751 5.27232 5.31137 5.36739 5.41125 5.51553 5.61479 5.74406 5.82670 5.84463 5.87116 5.87281 5.99762 6.01131 6.28981 6.35206 6.38088 6.44769 6.64681 6.65700 6.72765 6.83076 6.96840 7.20041 7.39288 7.43269 7.48237 7.73995 7.79340 8.00913 8.27163 8.52098 8.68814 8.74026 10.00352 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.002310 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.113770 B =12115.917966 C =12483.461252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.033 4.033 3 C 0.088 3.912 4 O -0.561 6.561 5 C 0.134 3.866 6 N -0.731 5.731 7 C 0.563 3.437 8 O -0.547 6.547 9 C -0.107 4.107 10 C -0.218 4.218 11 C -0.083 4.083 12 C -0.223 4.223 13 C 0.082 3.918 14 C -0.442 4.442 15 H 0.094 0.906 16 C 0.083 3.917 17 N -0.803 5.803 18 Si 0.911 3.089 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.244 1.244 22 C -0.135 4.135 23 C -0.053 4.053 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.115 4.115 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.379 0.621 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.397 0.603 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.286 0.714 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 3.026 24.939 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C 0.010 3.990 4 O -0.366 6.366 5 C 0.010 3.990 6 N -0.385 5.385 7 C 0.353 3.647 8 O -0.425 6.425 9 C -0.110 4.110 10 C -0.238 4.238 11 C -0.101 4.101 12 C -0.242 4.242 13 C 0.079 3.921 14 C -0.470 4.470 15 H 0.112 0.888 16 C -0.137 4.137 17 N -0.427 5.427 18 Si 0.738 3.262 19 H -0.196 1.196 20 H -0.217 1.217 21 H -0.167 1.167 22 C -0.156 4.156 23 C -0.053 4.053 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.145 4.145 27 C -0.139 4.139 28 C -0.133 4.133 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.225 0.775 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.233 0.767 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.718 1.628 24.559 24.673 hybrid contribution -0.969 1.291 0.025 1.615 sum -2.687 2.919 24.584 24.902 Atomic orbital electron populations 1.21881 0.92195 1.03422 1.02395 1.19781 0.96016 0.94384 0.93148 1.22182 0.81973 0.94987 0.99819 1.86528 1.18933 1.33531 1.97615 1.21332 0.99980 0.95410 0.82284 1.45948 1.54759 1.32480 1.05353 1.18753 0.79175 0.83499 0.83242 1.90699 1.38196 1.26610 1.87006 1.19429 1.01874 0.97408 0.92251 1.20340 1.07037 0.99752 0.96660 1.20497 0.98622 0.98180 0.92809 1.21165 1.07675 0.99370 0.95998 1.17708 0.90688 0.90490 0.93243 1.19527 1.05618 1.31685 0.90135 0.88822 1.26176 1.01896 0.91354 0.94241 1.69693 1.37949 1.35105 0.99904 0.86305 0.81132 0.78951 0.79853 1.19569 1.21662 1.16677 1.21281 1.03931 1.00095 0.90259 1.19444 0.97284 0.95244 0.93358 1.21234 0.97219 0.95354 0.99288 1.21159 0.99798 0.99943 0.92519 1.21125 0.98977 0.97018 0.97388 1.21059 0.98419 0.96141 0.98244 1.20874 1.00560 0.99976 0.91905 0.91628 0.91212 0.91844 0.93359 0.93131 0.77472 0.90380 0.91498 0.76692 0.88876 0.88339 0.87904 0.90309 0.86649 0.85420 0.86086 0.86367 0.86324 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.11 37.16 0.30 -0.90 16 2 C -0.03 -0.33 0.45 -155.66 -0.07 -0.40 16 3 C 0.09 0.80 5.56 37.16 0.21 1.00 16 4 O -0.56 -5.82 12.61 -35.23 -0.44 -6.26 16 5 C 0.13 1.78 3.08 -4.04 -0.01 1.76 16 6 N -0.73 -10.86 4.91 -61.23 -0.30 -11.16 16 7 C 0.56 11.15 7.77 -12.31 -0.10 11.05 16 8 O -0.55 -12.53 16.33 5.32 0.09 -12.44 16 9 C -0.11 -2.27 5.87 -105.04 -0.62 -2.89 16 10 C -0.22 -4.14 9.55 -38.92 -0.37 -4.52 16 11 C -0.08 -1.66 10.01 -39.73 -0.40 -2.06 16 12 C -0.22 -5.15 7.17 -38.81 -0.28 -5.43 16 13 C 0.08 2.06 5.10 -106.87 -0.55 1.51 16 14 C -0.44 -11.87 9.57 -37.73 -0.36 -12.23 16 15 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 16 C 0.08 2.14 5.40 -17.34 -0.09 2.05 16 17 N -0.80 -21.11 13.93 55.55 0.77 -20.34 16 18 Si 0.91 20.27 24.52 -169.99 -4.17 16.11 16 19 H -0.27 -5.74 6.71 56.52 0.38 -5.37 16 20 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.24 -5.55 6.87 56.52 0.39 -5.16 16 22 C -0.14 -3.27 9.34 -38.44 -0.36 -3.63 16 23 C -0.05 -0.55 4.41 -104.63 -0.46 -1.01 16 24 C -0.11 -1.25 8.98 -39.59 -0.36 -1.61 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 26 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 27 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 28 C -0.12 -1.04 8.71 -39.58 -0.34 -1.39 16 29 H 0.06 0.54 6.86 -51.93 -0.36 0.19 16 30 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 32 H 0.05 0.35 7.39 -51.93 -0.38 -0.04 16 33 H 0.05 0.44 6.86 -51.93 -0.36 0.08 16 34 H 0.38 2.39 9.12 45.56 0.42 2.80 16 35 H 0.08 1.19 7.07 -51.93 -0.37 0.82 16 36 H 0.07 0.93 7.50 -51.93 -0.39 0.54 16 37 H 0.40 4.98 4.18 -40.82 -0.17 4.81 16 38 H 0.09 1.41 6.38 -52.48 -0.33 1.07 16 39 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.10 2.36 4.72 -52.49 -0.25 2.11 16 41 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 42 H 0.12 2.86 7.64 -52.48 -0.40 2.45 16 43 H 0.13 1.47 5.90 -52.49 -0.31 1.16 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.12 0.85 7.10 -52.48 -0.37 0.48 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -31.23 377.01 -8.78 -40.01 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.36 Total: 11.55 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -5.05 Total: -23.15 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.47 Total: -31.50 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.36 Total: -18.70 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.17 Total: 16.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.23 -8.78 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346325854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.770 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds