Wall clock time and date at job start Tue Mar 31 2020 22:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46964 * 2 1 4 4 O 1.42895 * 109.47333 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47081 * 240.00452 * 2 1 3 6 6 N 1.46500 * 109.47496 * 59.99514 * 5 2 1 7 7 C 1.34769 * 119.99957 * 179.97438 * 6 5 2 8 8 O 1.21550 * 120.00233 * 359.97438 * 7 6 5 9 9 C 1.47896 * 119.99809 * 180.02562 * 7 6 5 10 10 C 1.39915 * 120.02414 * 359.72549 * 9 7 6 11 11 C 1.38325 * 120.35600 * 179.78563 * 10 9 7 12 12 C 1.37749 * 120.41439 * 0.47208 * 11 10 9 13 13 C 1.40750 * 120.03796 * 359.78492 * 12 11 10 14 14 C 1.41440 * 120.17731 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99795 * 150.17276 * 14 13 12 16 16 C 1.39936 * 119.99873 * 330.17345 * 14 13 12 17 17 N 1.30827 * 119.99629 * 161.73124 * 16 14 13 18 18 Si 1.86793 * 120.00135 * 341.73351 * 16 14 13 19 19 H 1.48504 * 109.47393 * 95.41289 * 18 16 14 20 20 H 1.48505 * 109.47391 * 215.41243 * 18 16 14 21 21 H 1.48510 * 109.47240 * 335.41300 * 18 16 14 22 22 C 1.38990 * 120.02403 * 180.02562 * 9 7 6 23 23 C 1.50697 * 109.47442 * 120.00126 * 2 1 3 24 24 C 1.38230 * 120.00250 * 119.73005 * 23 2 1 25 25 C 1.38235 * 120.00425 * 179.79197 * 24 23 2 26 26 C 1.38238 * 119.99485 * 0.43730 * 25 24 23 27 27 C 1.38236 * 120.00267 * 359.81344 * 26 25 24 28 28 C 1.38234 * 119.99800 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47343 * 60.00175 * 1 2 3 30 30 H 1.09009 * 109.46669 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47176 * 299.99473 * 1 2 3 32 32 H 1.09002 * 109.47155 * 59.99961 * 3 2 1 33 33 H 1.08999 * 109.47494 * 300.00599 * 3 2 1 34 34 H 0.96703 * 114.00318 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.46907 * 179.97438 * 5 2 1 36 36 H 1.09000 * 109.46989 * 299.99650 * 5 2 1 37 37 H 0.97000 * 119.99505 * 0.02562 * 6 5 2 38 38 H 1.08005 * 119.82091 * 0.02562 * 10 9 7 39 39 H 1.08000 * 119.79158 * 180.23548 * 11 10 9 40 40 H 1.07997 * 119.98072 * 179.76519 * 12 11 10 41 41 H 0.97000 * 119.99847 * 179.97438 * 17 16 14 42 42 H 1.08007 * 120.20366 * 359.95437 * 22 9 7 43 43 H 1.07998 * 119.99841 * 359.97438 * 24 23 2 44 44 H 1.07998 * 120.00669 * 180.27491 * 25 24 23 45 45 H 1.08004 * 119.99724 * 179.83897 * 26 25 24 46 46 H 1.07993 * 119.99929 * 180.02562 * 27 26 25 47 47 H 1.08007 * 119.99885 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 2.0400 -0.7211 -1.2493 6 7 1.5516 -0.0306 -2.4455 7 6 1.8776 -0.4907 -3.6695 8 8 2.5772 -1.4784 -3.7811 9 6 1.3850 0.2068 -4.8770 10 6 0.5758 1.3410 -4.7492 11 6 0.1149 2.0013 -5.8740 12 6 0.4390 1.5446 -7.1325 13 6 1.2475 0.4021 -7.2809 14 6 1.5825 -0.0691 -8.5717 15 1 2.5177 -0.5850 -8.7324 16 6 0.7024 0.1333 -9.6406 17 7 1.1344 0.0338 -10.8715 18 14 -1.0893 0.5455 -9.3101 19 1 -1.2745 2.0183 -9.3526 20 1 -1.9428 -0.0908 -10.3454 21 1 -1.4751 0.0366 -7.9693 22 6 1.7205 -0.2676 -6.1397 23 6 2.0324 -0.7104 1.2304 24 6 2.8225 -1.8375 1.1036 25 6 3.2869 -2.4867 2.2322 26 6 2.9537 -2.0139 3.4877 27 6 2.1593 -0.8898 3.6146 28 6 1.6985 -0.2381 2.4860 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.8622 2.3260 -0.0002 35 1 3.1300 -0.7207 -1.2495 36 1 1.6767 -1.7488 -1.2493 37 1 0.9942 0.7583 -2.3564 38 1 0.3128 1.7052 -3.7670 39 1 -0.5061 2.8781 -5.7647 40 1 0.0722 2.0633 -8.0058 41 1 0.5243 0.1737 -11.6124 42 1 2.3415 -1.1452 -6.2431 43 1 3.0794 -2.2093 0.1227 44 1 3.9079 -3.3647 2.1331 45 1 3.3144 -2.5226 4.3695 46 1 1.8993 -0.5203 4.5955 47 1 1.0775 0.6400 2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346325854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:13 Heat of formation + Delta-G solvation = -67.793010 kcal Electronic energy + Delta-G solvation = -28580.769848 eV Core-core repulsion = 24691.769600 eV Total energy + Delta-G solvation = -3889.000248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.48848 -40.53774 -39.08883 -38.24732 -36.37881 -35.59402 -34.40564 -32.47364 -31.90883 -31.72886 -30.46251 -28.04118 -27.08727 -26.84357 -24.76888 -23.59777 -23.02154 -22.44935 -21.64030 -20.40730 -19.61468 -18.27076 -18.20481 -17.95149 -17.24838 -17.00055 -16.54041 -16.43646 -15.96753 -15.95938 -15.47156 -15.25689 -15.20923 -15.03655 -14.57556 -14.45071 -14.34986 -14.11303 -13.97458 -13.84841 -13.45462 -13.32808 -13.16551 -12.88049 -12.81491 -12.68903 -12.49446 -12.30207 -12.22579 -11.76837 -11.73732 -11.57042 -11.40234 -11.21089 -10.87497 -10.85255 -10.20258 -9.77124 -9.63377 -9.56612 -9.55753 -8.92013 -6.56222 0.17350 0.49868 0.54154 0.73793 1.25201 1.41868 1.48765 1.94652 2.12582 2.13762 2.64805 2.91152 3.26716 3.44755 3.48358 3.79592 3.88435 3.91393 4.12137 4.17424 4.25610 4.30079 4.32698 4.40012 4.53297 4.56825 4.58257 4.62345 4.67091 4.72540 4.84609 4.87605 4.89891 4.92114 4.99435 5.15222 5.15529 5.18821 5.27415 5.36353 5.41712 5.62426 5.64367 5.66999 5.70546 5.72033 5.83936 6.10181 6.15589 6.29231 6.54511 6.65592 6.73164 6.93659 7.21684 8.17142 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.002310 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.113770 B =12115.917966 C =12483.461252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.026 4.026 3 C 0.085 3.915 4 O -0.587 6.587 5 C 0.138 3.862 6 N -0.703 5.703 7 C 0.560 3.440 8 O -0.589 6.589 9 C -0.111 4.111 10 C -0.181 4.181 11 C -0.080 4.080 12 C -0.224 4.224 13 C 0.065 3.935 14 C -0.489 4.489 15 H 0.047 0.953 16 C 0.043 3.957 17 N -0.849 5.849 18 Si 0.969 3.031 19 H -0.244 1.244 20 H -0.278 1.278 21 H -0.251 1.251 22 C -0.169 4.169 23 C -0.063 4.063 24 C -0.141 4.141 25 C -0.130 4.130 26 C -0.133 4.133 27 C -0.122 4.122 28 C -0.117 4.117 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.394 0.606 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.412 0.588 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.107 0.893 41 H 0.295 0.705 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.139 0.861 46 H 0.146 0.854 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 6.530 29.256 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 C 0.008 3.992 4 O -0.395 6.395 5 C 0.014 3.986 6 N -0.356 5.356 7 C 0.349 3.651 8 O -0.470 6.470 9 C -0.114 4.114 10 C -0.201 4.201 11 C -0.098 4.098 12 C -0.244 4.244 13 C 0.063 3.937 14 C -0.519 4.519 15 H 0.066 0.934 16 C -0.171 4.171 17 N -0.475 5.475 18 Si 0.791 3.209 19 H -0.169 1.169 20 H -0.205 1.205 21 H -0.174 1.174 22 C -0.189 4.189 23 C -0.063 4.063 24 C -0.159 4.159 25 C -0.148 4.148 26 C -0.151 4.151 27 C -0.139 4.139 28 C -0.135 4.135 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.244 0.756 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.252 0.748 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.145 0.855 45 H 0.157 0.843 46 H 0.164 0.836 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.040 5.179 28.913 29.802 hybrid contribution 0.164 0.214 -0.999 1.035 sum -4.876 5.393 27.914 28.845 Atomic orbital electron populations 1.21912 0.90523 1.03362 1.04034 1.19771 0.97207 0.94805 0.90839 1.22310 0.81411 0.94016 1.01513 1.86504 1.19981 1.35304 1.97738 1.21345 0.98651 0.95423 0.83181 1.45698 1.53457 1.32303 1.04189 1.18656 0.79018 0.83083 0.84335 1.90690 1.40172 1.28519 1.87647 1.19677 1.01858 0.98313 0.91597 1.20980 1.02944 0.96904 0.99251 1.21053 0.98168 0.99314 0.91248 1.21393 1.06652 0.98280 0.98050 1.17782 0.91892 0.91614 0.92442 1.19456 1.05390 1.34635 0.92371 0.93425 1.26944 1.05548 0.91022 0.93601 1.69728 1.39576 1.37447 1.00772 0.85441 0.75952 0.80116 0.79381 1.16890 1.20482 1.17419 1.21191 1.05431 1.00320 0.91962 1.19542 0.97451 0.95075 0.94264 1.21262 0.98955 0.96767 0.98945 1.21346 1.00163 1.00388 0.92897 1.21432 0.98805 0.97349 0.97477 1.21447 0.97474 0.95594 0.99434 1.21144 1.00522 1.00627 0.91165 0.90892 0.92217 0.89260 0.90597 0.92315 0.75635 0.92758 0.92711 0.74813 0.83292 0.83172 0.87493 0.89428 0.89596 0.87421 0.85473 0.84297 0.83649 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.11 71.98 0.58 -1.25 16 2 C -0.03 -0.45 0.45 -52.93 -0.02 -0.47 16 3 C 0.09 1.20 5.56 71.98 0.40 1.60 16 4 O -0.59 -10.83 12.61 -148.98 -1.88 -12.71 16 5 C 0.14 3.57 3.08 86.38 0.27 3.84 16 6 N -0.70 -19.36 4.91 -465.93 -2.29 -21.65 16 7 C 0.56 21.98 7.77 86.80 0.67 22.65 16 8 O -0.59 -28.22 16.33 -3.87 -0.06 -28.28 16 9 C -0.11 -4.63 5.87 -20.13 -0.12 -4.74 16 10 C -0.18 -5.99 9.55 22.70 0.22 -5.78 16 11 C -0.08 -2.80 10.01 22.17 0.22 -2.57 16 12 C -0.22 -9.94 7.17 22.77 0.16 -9.78 16 13 C 0.07 3.39 5.10 -21.32 -0.11 3.28 16 14 C -0.49 -28.43 9.57 23.47 0.22 -28.20 16 15 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 16 C 0.04 2.34 5.40 85.25 0.46 2.80 16 17 N -0.85 -47.19 13.93 21.82 0.30 -46.89 16 18 Si 0.97 41.59 24.52 68.60 1.68 43.27 16 19 H -0.24 -9.43 6.71 99.48 0.67 -8.76 16 20 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 21 H -0.25 -10.90 6.87 99.48 0.68 -10.22 16 22 C -0.17 -8.53 9.34 23.01 0.21 -8.32 16 23 C -0.06 -1.19 4.41 -19.87 -0.09 -1.28 16 24 C -0.14 -3.17 8.98 22.27 0.20 -2.97 16 25 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 26 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 27 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 28 C -0.12 -1.71 8.71 22.27 0.19 -1.52 16 29 H 0.07 0.83 6.86 -2.39 -0.02 0.82 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.09 0.73 7.39 -2.39 -0.02 0.72 16 32 H 0.08 0.68 7.39 -2.39 -0.02 0.67 16 33 H 0.06 0.72 6.86 -2.39 -0.02 0.70 16 34 H 0.39 3.97 9.12 -74.06 -0.68 3.30 16 35 H 0.05 1.71 7.07 -2.39 -0.02 1.69 16 36 H 0.05 1.57 7.50 -2.39 -0.02 1.55 16 37 H 0.41 8.44 4.18 -92.71 -0.39 8.05 16 38 H 0.15 3.31 6.38 -2.91 -0.02 3.29 16 39 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.11 4.64 4.72 -2.91 -0.01 4.63 16 41 H 0.30 14.59 8.30 -92.71 -0.77 13.82 16 42 H 0.09 4.72 7.64 -2.91 -0.02 4.70 16 43 H 0.11 2.73 5.90 -2.91 -0.02 2.71 16 44 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 45 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 46 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 47 H 0.14 1.32 7.10 -2.91 -0.02 1.30 16 Total: -1.00 -75.53 377.01 1.80 -73.72 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.11 Total: 30.83 kcal Atomic # 6 Polarization: -42.45 SS G_CDS: 4.15 Total: -38.30 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -1.98 Total: -68.54 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.94 Total: -40.99 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.68 Total: 43.27 kcal Total: -75.53 1.80 -73.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346325854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.931 kcal (2) G-P(sol) polarization free energy of solvation -75.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds