Wall clock time and date at job start Tue Mar 31 2020 22:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42891 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46837 * 119.99719 * 2 1 3 5 5 N 1.46494 * 109.47577 * 305.00204 * 4 2 1 6 6 C 1.34009 * 124.22468 * 89.97296 * 5 4 2 7 7 O 1.21541 * 123.81416 * 0.02562 * 6 5 4 8 8 N 1.34980 * 112.36947 * 179.97438 * 6 5 4 9 9 C 1.45939 * 105.99523 * 0.02562 * 8 6 5 10 10 C 1.53571 * 112.01135 * 238.41429 * 9 8 6 11 11 C 1.54499 * 104.08611 * 275.02034 * 10 9 8 12 12 C 1.53977 * 106.66178 * 337.67240 * 11 10 9 13 13 C 1.53571 * 112.01079 * 121.58181 * 9 8 6 14 14 C 1.35208 * 124.22026 * 269.95733 * 5 4 2 15 15 O 1.21235 * 127.46858 * 0.03162 * 14 5 4 16 16 C 1.50702 * 109.47063 * 239.99663 * 2 1 3 17 17 O 1.21277 * 120.00092 * 265.00016 * 16 2 1 18 18 N 1.34779 * 119.99566 * 84.99893 * 16 2 1 19 19 C 1.46505 * 119.99703 * 179.97438 * 18 16 2 20 20 C 1.50698 * 109.46962 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00259 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99887 * 180.02562 * 20 19 18 23 23 N 1.31512 * 119.99877 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47068 * 89.99966 * 24 22 20 26 26 H 1.48501 * 109.47216 * 209.99805 * 24 22 20 27 27 H 1.48500 * 109.47624 * 330.00204 * 24 22 20 28 28 H 1.08995 * 109.47628 * 300.00315 * 1 2 3 29 29 H 1.09009 * 109.46851 * 60.00173 * 1 2 3 30 30 H 1.08997 * 109.47400 * 179.97438 * 1 2 3 31 31 H 0.96700 * 114.00078 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46886 * 184.99643 * 4 2 1 33 33 H 1.09000 * 109.46943 * 65.00312 * 4 2 1 34 34 H 0.97002 * 127.00288 * 180.02562 * 8 6 5 35 35 H 1.08999 * 110.50635 * 156.36822 * 10 9 8 36 36 H 1.08999 * 110.50963 * 33.67130 * 10 9 8 37 37 H 1.08999 * 110.02012 * 218.37913 * 11 10 9 38 38 H 1.08993 * 110.02517 * 96.97182 * 11 10 9 39 39 H 1.08997 * 110.01708 * 119.30557 * 12 11 10 40 40 H 1.09001 * 110.01783 * 240.70100 * 12 11 10 41 41 H 1.09000 * 110.51149 * 326.32653 * 13 9 8 42 42 H 1.09003 * 110.50881 * 203.63378 * 13 9 8 43 43 H 0.97002 * 120.00156 * 0.02562 * 18 16 2 44 44 H 1.09005 * 109.46579 * 300.00355 * 19 18 16 45 45 H 1.09000 * 109.46842 * 60.00052 * 19 18 16 46 46 H 0.97003 * 120.00203 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4558 -0.1037 2.4424 6 6 0.2993 -0.4873 3.0002 7 8 -0.3901 -1.3926 2.5732 8 7 -0.0130 0.2448 4.0904 9 6 1.0694 1.2106 4.2497 10 6 1.7580 1.0831 5.6165 11 6 0.8825 1.9378 6.5598 12 6 0.1212 2.9379 5.6703 13 6 0.5585 2.6585 4.2151 14 6 2.0165 0.9243 3.1184 15 8 3.0574 1.4924 2.8663 16 6 2.0324 -0.7105 -1.2304 17 8 2.3208 -1.8872 -1.1759 18 7 2.1610 -0.0381 -2.3914 19 6 2.6499 -0.7287 -3.5875 20 6 2.7010 0.2398 -4.7410 21 1 2.3999 1.2669 -4.5974 22 6 3.1322 -0.1856 -5.9796 23 7 3.4993 -1.4363 -6.1542 24 14 3.1949 1.0146 -7.4096 25 1 4.5265 1.6710 -7.4469 26 1 2.9684 0.2819 -8.6812 27 1 2.1397 2.0453 -7.2375 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 2.9703 1.4236 -0.0004 32 1 3.1263 -0.6443 1.2952 33 1 1.7516 -1.7715 1.2056 34 1 -0.7971 0.1485 4.6533 35 1 2.7719 1.4808 5.5718 36 1 1.7687 0.0433 5.9432 37 1 1.5123 2.4742 7.2695 38 1 0.1770 1.3010 7.0934 39 1 -0.9532 2.7856 5.7728 40 1 0.3821 3.9589 5.9490 41 1 -0.2905 2.7478 3.5373 42 1 1.3575 3.3384 3.9193 43 1 1.9306 0.9031 -2.4349 44 1 3.6492 -1.1204 -3.3978 45 1 1.9777 -1.5510 -3.8325 46 1 3.8023 -1.7357 -7.0257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357108201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:03 Heat of formation + Delta-G solvation = -136.732138 kcal Electronic energy + Delta-G solvation = -30904.657039 eV Core-core repulsion = 26601.818103 eV Total energy + Delta-G solvation = -4302.838936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.96281 -39.78101 -38.90722 -38.18285 -36.71550 -35.78146 -34.42801 -33.84924 -32.29599 -31.24807 -29.46732 -28.88312 -27.52877 -27.23369 -24.13746 -23.63976 -22.26407 -21.14227 -21.06466 -20.58569 -19.66041 -18.39718 -17.99646 -17.16033 -16.79275 -16.37678 -16.21249 -15.60708 -15.46492 -15.38064 -15.11885 -15.00017 -14.77884 -14.51959 -14.32931 -14.00764 -13.69539 -13.17505 -13.00262 -12.37493 -12.33559 -12.26810 -12.18143 -12.09213 -11.87154 -11.84717 -11.81497 -11.74472 -11.61117 -11.13601 -11.01621 -10.99927 -10.97829 -10.89522 -10.32444 -10.31547 -9.88722 -9.71368 -9.42341 -8.88345 -8.76171 -7.95986 -6.18075 -4.25101 1.39150 1.95567 2.76711 2.84837 3.11563 3.24296 3.30464 3.33163 3.56785 3.86055 3.93127 3.97712 4.18081 4.34528 4.49550 4.59902 4.63908 4.74976 4.81495 4.86760 5.03552 5.06926 5.18228 5.20117 5.28223 5.37338 5.39499 5.43176 5.53651 5.59789 5.61509 5.66498 5.75813 5.76494 5.87811 6.20068 6.50729 6.84014 7.18172 7.21907 7.31439 7.46304 7.48981 7.65950 7.90872 7.93923 8.54109 8.71646 8.98211 9.41273 10.92055 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.002526 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.917317 B =11081.346750 C =11524.487794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.103 3.897 3 O -0.546 6.546 4 C 0.106 3.894 5 N -0.569 5.569 6 C 0.701 3.299 7 O -0.532 6.532 8 N -0.714 5.714 9 C 0.112 3.888 10 C -0.118 4.118 11 C -0.123 4.123 12 C -0.123 4.123 13 C -0.116 4.116 14 C 0.540 3.460 15 O -0.456 6.456 16 C 0.479 3.521 17 O -0.549 6.549 18 N -0.696 5.696 19 C 0.248 3.752 20 C -0.543 4.543 21 H 0.064 0.936 22 C 0.064 3.936 23 N -0.885 5.885 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.384 0.616 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.439 0.561 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.397 0.603 44 H 0.029 0.971 45 H 0.029 0.971 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.561 9.012 27.317 29.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.057 3.943 3 O -0.352 6.352 4 C -0.016 4.016 5 N -0.315 5.315 6 C 0.402 3.598 7 O -0.405 6.405 8 N -0.379 5.379 9 C 0.020 3.980 10 C -0.157 4.157 11 C -0.160 4.160 12 C -0.161 4.161 13 C -0.155 4.155 14 C 0.327 3.673 15 O -0.325 6.325 16 C 0.261 3.739 17 O -0.429 6.429 18 N -0.344 5.344 19 C 0.127 3.873 20 C -0.582 4.582 21 H 0.082 0.918 22 C -0.140 4.140 23 N -0.523 5.523 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.233 0.767 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.283 0.717 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.231 0.769 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.650 7.941 26.698 28.637 hybrid contribution 0.223 0.814 -0.702 1.098 sum -6.427 8.755 25.997 28.174 Atomic orbital electron populations 1.21697 0.90100 1.03869 1.02889 1.21817 0.97297 0.82904 0.92234 1.86535 1.27648 1.24231 1.96808 1.22201 0.99092 0.99419 0.80842 1.46428 1.22607 1.34096 1.28359 1.16033 0.81046 0.82134 0.80568 1.91048 1.53036 1.30492 1.65889 1.45289 1.25798 1.36116 1.30706 1.21382 0.87753 0.92605 0.96254 1.22494 1.00131 1.01926 0.91107 1.22208 0.98569 0.97417 0.97841 1.22218 1.00378 1.00077 0.93425 1.22477 1.02506 0.92062 0.98448 1.20318 0.85539 0.78632 0.82853 1.90784 1.21272 1.50904 1.69514 1.20772 0.79820 0.87797 0.85493 1.90694 1.51042 1.15771 1.85388 1.46459 1.63475 1.14212 1.10212 1.19184 0.95106 0.93097 0.79887 1.21212 1.46181 0.96469 0.94317 0.91810 1.24950 0.94754 0.95440 0.98851 1.69972 1.42853 1.15262 1.24190 0.86400 0.78524 0.80649 0.81261 1.20428 1.20996 1.19715 0.92136 0.91017 0.89653 0.76731 0.88018 0.86182 0.71675 0.88945 0.89986 0.90768 0.91250 0.91240 0.90740 0.89847 0.88862 0.76885 0.95353 0.95330 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 7.60 37.16 0.28 -1.62 16 2 C 0.10 1.58 1.09 -91.77 -0.10 1.48 16 3 O -0.55 -7.67 11.96 -35.23 -0.42 -8.09 16 4 C 0.11 1.50 4.58 -4.05 -0.02 1.48 16 5 N -0.57 -6.91 2.24 -120.93 -0.27 -7.19 16 6 C 0.70 8.35 6.93 -87.42 -0.61 7.74 16 7 O -0.53 -8.04 16.30 5.33 0.09 -7.95 16 8 N -0.71 -5.57 6.03 -53.62 -0.32 -5.89 16 9 C 0.11 0.85 1.04 -132.88 -0.14 0.71 16 10 C -0.12 -0.67 6.02 -25.65 -0.15 -0.82 16 11 C -0.12 -0.47 6.82 -25.44 -0.17 -0.64 16 12 C -0.12 -0.50 6.82 -25.44 -0.17 -0.67 16 13 C -0.12 -0.73 6.03 -25.65 -0.15 -0.88 16 14 C 0.54 5.98 6.73 -10.99 -0.07 5.90 16 15 O -0.46 -5.93 17.79 5.60 0.10 -5.83 16 16 C 0.48 9.49 6.69 -10.98 -0.07 9.42 16 17 O -0.55 -12.81 15.99 5.56 0.09 -12.72 16 18 N -0.70 -14.74 5.46 -61.47 -0.34 -15.08 16 19 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 20 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 21 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 24 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.06 0.84 6.26 -51.93 -0.32 0.51 16 29 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 30 H 0.08 1.35 7.85 -51.93 -0.41 0.95 16 31 H 0.38 4.76 9.04 45.56 0.41 5.17 16 32 H 0.10 1.36 8.02 -51.93 -0.42 0.94 16 33 H 0.12 1.84 7.41 -51.93 -0.38 1.46 16 34 H 0.44 2.36 8.96 -40.82 -0.37 1.99 16 35 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.64 8.07 -51.93 -0.42 0.23 16 43 H 0.40 7.61 7.76 -40.82 -0.32 7.29 16 44 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 381.06 15.07 5.74 5.74 Total: -1.00 -33.86 381.06 -7.43 -41.29 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.98 Total: 9.92 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: -1.83 Total: 15.18 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.19 Total: -53.48 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.15 Total: -34.59 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.86 -7.43 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357108201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.443 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds