Wall clock time and date at job start Tue Mar 31 2020 22:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42891 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46837 * 119.99719 * 2 1 3 5 5 N 1.46494 * 109.47577 * 305.00204 * 4 2 1 6 6 C 1.34009 * 124.22468 * 89.97296 * 5 4 2 7 7 O 1.21541 * 123.81416 * 0.02562 * 6 5 4 8 8 N 1.34980 * 112.36947 * 179.97438 * 6 5 4 9 9 C 1.45939 * 105.99523 * 0.02562 * 8 6 5 10 10 C 1.53571 * 112.01135 * 238.41429 * 9 8 6 11 11 C 1.54499 * 104.08611 * 275.02034 * 10 9 8 12 12 C 1.53977 * 106.66178 * 337.67240 * 11 10 9 13 13 C 1.53571 * 112.01079 * 121.58181 * 9 8 6 14 14 C 1.35208 * 124.22026 * 269.95733 * 5 4 2 15 15 O 1.21235 * 127.46858 * 0.03162 * 14 5 4 16 16 C 1.50702 * 109.47063 * 239.99663 * 2 1 3 17 17 O 1.21277 * 120.00092 * 265.00016 * 16 2 1 18 18 N 1.34779 * 119.99566 * 84.99893 * 16 2 1 19 19 C 1.46505 * 119.99703 * 179.97438 * 18 16 2 20 20 C 1.50698 * 109.46962 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00259 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99887 * 180.02562 * 20 19 18 23 23 N 1.31512 * 119.99877 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47068 * 89.99966 * 24 22 20 26 26 H 1.48501 * 109.47216 * 209.99805 * 24 22 20 27 27 H 1.48500 * 109.47624 * 330.00204 * 24 22 20 28 28 H 1.08995 * 109.47628 * 300.00315 * 1 2 3 29 29 H 1.09009 * 109.46851 * 60.00173 * 1 2 3 30 30 H 1.08997 * 109.47400 * 179.97438 * 1 2 3 31 31 H 0.96700 * 114.00078 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46886 * 184.99643 * 4 2 1 33 33 H 1.09000 * 109.46943 * 65.00312 * 4 2 1 34 34 H 0.97002 * 127.00288 * 180.02562 * 8 6 5 35 35 H 1.08999 * 110.50635 * 156.36822 * 10 9 8 36 36 H 1.08999 * 110.50963 * 33.67130 * 10 9 8 37 37 H 1.08999 * 110.02012 * 218.37913 * 11 10 9 38 38 H 1.08993 * 110.02517 * 96.97182 * 11 10 9 39 39 H 1.08997 * 110.01708 * 119.30557 * 12 11 10 40 40 H 1.09001 * 110.01783 * 240.70100 * 12 11 10 41 41 H 1.09000 * 110.51149 * 326.32653 * 13 9 8 42 42 H 1.09003 * 110.50881 * 203.63378 * 13 9 8 43 43 H 0.97002 * 120.00156 * 0.02562 * 18 16 2 44 44 H 1.09005 * 109.46579 * 300.00355 * 19 18 16 45 45 H 1.09000 * 109.46842 * 60.00052 * 19 18 16 46 46 H 0.97003 * 120.00203 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4558 -0.1037 2.4424 6 6 0.2993 -0.4873 3.0002 7 8 -0.3901 -1.3926 2.5732 8 7 -0.0130 0.2448 4.0904 9 6 1.0694 1.2106 4.2497 10 6 1.7580 1.0831 5.6165 11 6 0.8825 1.9378 6.5598 12 6 0.1212 2.9379 5.6703 13 6 0.5585 2.6585 4.2151 14 6 2.0165 0.9243 3.1184 15 8 3.0574 1.4924 2.8663 16 6 2.0324 -0.7105 -1.2304 17 8 2.3208 -1.8872 -1.1759 18 7 2.1610 -0.0381 -2.3914 19 6 2.6499 -0.7287 -3.5875 20 6 2.7010 0.2398 -4.7410 21 1 2.3999 1.2669 -4.5974 22 6 3.1322 -0.1856 -5.9796 23 7 3.4993 -1.4363 -6.1542 24 14 3.1949 1.0146 -7.4096 25 1 4.5265 1.6710 -7.4469 26 1 2.9684 0.2819 -8.6812 27 1 2.1397 2.0453 -7.2375 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 2.9703 1.4236 -0.0004 32 1 3.1263 -0.6443 1.2952 33 1 1.7516 -1.7715 1.2056 34 1 -0.7971 0.1485 4.6533 35 1 2.7719 1.4808 5.5718 36 1 1.7687 0.0433 5.9432 37 1 1.5123 2.4742 7.2695 38 1 0.1770 1.3010 7.0934 39 1 -0.9532 2.7856 5.7728 40 1 0.3821 3.9589 5.9490 41 1 -0.2905 2.7478 3.5373 42 1 1.3575 3.3384 3.9193 43 1 1.9306 0.9031 -2.4349 44 1 3.6492 -1.1204 -3.3978 45 1 1.9777 -1.5510 -3.8325 46 1 3.8023 -1.7357 -7.0257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357108201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:02 Heat of formation + Delta-G solvation = -165.085018 kcal Electronic energy + Delta-G solvation = -30905.886512 eV Core-core repulsion = 26601.818103 eV Total energy + Delta-G solvation = -4304.068409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.83750 -41.27549 -39.85100 -39.03262 -38.02798 -36.75667 -36.27967 -34.81805 -34.30231 -32.45457 -29.89153 -29.62230 -29.34999 -28.43265 -25.68951 -24.66801 -23.85380 -22.11821 -21.54318 -21.42457 -21.14294 -19.82531 -19.02912 -18.27908 -18.07769 -17.54021 -17.14566 -17.01751 -16.81582 -16.44780 -16.31014 -16.24860 -16.02751 -15.56879 -15.30353 -15.26482 -14.94874 -14.55306 -14.10417 -13.94383 -13.61350 -13.58828 -13.41463 -13.31203 -13.03670 -12.91224 -12.86029 -12.73559 -12.66642 -12.34315 -12.22717 -12.18230 -12.12177 -11.93642 -11.52219 -11.30625 -11.22093 -11.07283 -10.83185 -10.51972 -10.38765 -9.93753 -8.31325 -6.47885 0.50837 1.00031 1.42152 1.43640 1.45677 1.55631 1.80844 2.09459 2.25216 2.43733 2.85441 2.91795 3.03593 3.33726 3.39811 3.43600 3.56763 3.69240 4.01216 4.14190 4.22187 4.29681 4.40722 4.44021 4.47128 4.50494 4.54226 4.65276 4.68070 4.80801 4.95811 5.02535 5.04654 5.04701 5.19312 5.25551 5.28831 5.40778 5.46580 5.58893 5.78466 5.80590 5.95679 6.29979 6.32050 6.61057 6.76338 7.04422 7.17092 7.31575 8.80614 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.002526 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.917317 B =11081.346750 C =11524.487794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.123 3.877 3 O -0.539 6.539 4 C 0.110 3.890 5 N -0.572 5.572 6 C 0.697 3.303 7 O -0.568 6.568 8 N -0.689 5.689 9 C 0.116 3.884 10 C -0.116 4.116 11 C -0.117 4.117 12 C -0.118 4.118 13 C -0.115 4.115 14 C 0.534 3.466 15 O -0.478 6.478 16 C 0.479 3.521 17 O -0.586 6.586 18 N -0.691 5.691 19 C 0.265 3.735 20 C -0.557 4.557 21 H 0.081 0.919 22 C 0.006 3.994 23 N -0.929 5.929 24 Si 0.984 3.016 25 H -0.270 1.270 26 H -0.283 1.283 27 H -0.258 1.258 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.393 0.607 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.453 0.547 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.410 0.590 44 H -0.006 1.006 45 H -0.009 1.009 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 11.828 28.993 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 O -0.346 6.346 4 C -0.013 4.013 5 N -0.317 5.317 6 C 0.398 3.602 7 O -0.444 6.444 8 N -0.355 5.355 9 C 0.025 3.975 10 C -0.154 4.154 11 C -0.155 4.155 12 C -0.155 4.155 13 C -0.154 4.154 14 C 0.323 3.677 15 O -0.347 6.347 16 C 0.264 3.736 17 O -0.467 6.467 18 N -0.340 5.340 19 C 0.142 3.858 20 C -0.595 4.595 21 H 0.099 0.901 22 C -0.194 4.194 23 N -0.567 5.567 24 Si 0.807 3.193 25 H -0.195 1.195 26 H -0.209 1.209 27 H -0.181 1.181 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.244 0.756 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.300 0.700 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.246 0.754 44 H 0.012 0.988 45 H 0.009 0.991 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.597 10.821 28.455 31.377 hybrid contribution 0.549 -0.088 -1.154 1.281 sum -7.048 10.732 27.301 30.169 Atomic orbital electron populations 1.21646 0.89356 1.03325 1.03678 1.21530 0.97545 0.83042 0.90183 1.86530 1.28637 1.22906 1.96574 1.21961 0.99457 0.98541 0.81306 1.46434 1.22980 1.34494 1.27818 1.16161 0.80642 0.82089 0.81276 1.91031 1.54030 1.32175 1.67119 1.45176 1.26109 1.34928 1.29267 1.21521 0.86862 0.93336 0.95802 1.22538 1.00189 1.02709 0.90008 1.22214 0.98560 0.97233 0.97456 1.22221 1.01133 1.00668 0.91515 1.22510 1.02181 0.90426 1.00243 1.20932 0.85668 0.77801 0.83328 1.90771 1.22299 1.51441 1.70230 1.21605 0.78348 0.87416 0.86246 1.90674 1.52242 1.17734 1.86072 1.46186 1.63760 1.14653 1.09400 1.18641 0.92474 0.92600 0.82059 1.21574 1.46120 0.97172 0.94594 0.90080 1.26033 0.93948 0.97310 1.02117 1.70125 1.43787 1.17640 1.25160 0.85171 0.79138 0.78130 0.76886 1.19480 1.20852 1.18140 0.90708 0.90741 0.90930 0.75642 0.87529 0.87774 0.69956 0.89303 0.89658 0.89782 0.89908 0.89992 0.89868 0.89994 0.89473 0.75369 0.98764 0.99131 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 7.60 71.98 0.55 -3.06 16 2 C 0.12 3.76 1.09 -11.54 -0.01 3.75 16 3 O -0.54 -14.58 11.96 -148.98 -1.78 -16.36 16 4 C 0.11 3.16 4.58 86.38 0.40 3.55 16 5 N -0.57 -13.60 2.24 -773.39 -1.74 -15.34 16 6 C 0.70 16.03 6.93 179.23 1.24 17.27 16 7 O -0.57 -17.13 16.30 -3.85 -0.06 -17.19 16 8 N -0.69 -9.38 6.03 -441.71 -2.66 -12.05 16 9 C 0.12 1.52 1.04 3.22 0.00 1.53 16 10 C -0.12 -1.03 6.02 31.30 0.19 -0.84 16 11 C -0.12 -0.48 6.82 31.43 0.21 -0.27 16 12 C -0.12 -0.54 6.82 31.43 0.21 -0.33 16 13 C -0.11 -1.15 6.03 31.30 0.19 -0.96 16 14 C 0.53 11.25 6.73 87.46 0.59 11.83 16 15 O -0.48 -12.00 17.79 -2.89 -0.05 -12.05 16 16 C 0.48 19.56 6.69 87.66 0.59 20.14 16 17 O -0.59 -28.64 15.99 -3.02 -0.05 -28.68 16 18 N -0.69 -29.94 5.46 -466.77 -2.55 -32.48 16 19 C 0.26 14.60 5.43 85.63 0.46 15.06 16 20 C -0.56 -30.56 9.28 25.60 0.24 -30.32 16 21 H 0.08 4.08 7.60 -2.91 -0.02 4.05 16 22 C 0.01 0.32 5.46 84.66 0.46 0.79 16 23 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 24 Si 0.98 42.67 29.54 68.60 2.03 44.70 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 27 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 28 H 0.07 1.99 6.26 -2.39 -0.01 1.98 16 29 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.07 2.35 7.85 -2.39 -0.02 2.33 16 31 H 0.39 9.34 9.04 -74.06 -0.67 8.67 16 32 H 0.11 2.90 8.02 -2.39 -0.02 2.88 16 33 H 0.10 3.35 7.41 -2.39 -0.02 3.33 16 34 H 0.45 3.68 8.96 -92.71 -0.83 2.85 16 35 H 0.09 0.91 8.07 -2.39 -0.02 0.89 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.24 8.14 -2.39 -0.02 0.23 16 38 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 1.03 8.07 -2.39 -0.02 1.01 16 43 H 0.41 15.58 7.76 -92.71 -0.72 14.86 16 44 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 45 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 46 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -75.60 381.06 -2.43 -78.03 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -1.18 Total: 29.03 kcal Atomic # 6 Polarization: 32.82 SS G_CDS: 5.32 Total: 38.14 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -6.66 Total: -115.62 kcal Atomic # 8 Polarization: -72.34 SS G_CDS: -1.94 Total: -74.28 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -75.60 -2.43 -78.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357108201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.051 kcal (2) G-P(sol) polarization free energy of solvation -75.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds