Wall clock time and date at job start Tue Mar 31 2020 22:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47248 * 2 1 4 4 C 1.53005 * 109.46775 * 240.00430 * 2 1 3 5 5 N 1.46494 * 109.47385 * 59.99850 * 4 2 1 6 6 C 1.33939 * 124.20952 * 90.02493 * 5 4 2 7 7 O 1.21537 * 123.79687 * 0.02562 * 6 5 4 8 8 N 1.34817 * 112.39748 * 180.02562 * 6 5 4 9 9 C 1.46429 * 106.22443 * 359.97438 * 8 6 5 10 10 C 1.53056 * 111.39897 * 120.28528 * 9 8 6 11 11 C 1.54492 * 106.26552 * 122.21589 * 10 9 8 12 12 C 1.54962 * 104.22046 * 336.50783 * 11 10 9 13 13 C 1.53446 * 111.16565 * 240.11580 * 9 8 6 14 14 C 1.35050 * 124.21063 * 270.02473 * 5 4 2 15 15 O 1.21237 * 127.35297 * 0.02562 * 14 5 4 16 16 C 1.50698 * 109.47553 * 120.00514 * 2 1 3 17 17 O 1.21281 * 119.99994 * 94.98804 * 16 2 1 18 18 N 1.34781 * 119.99950 * 275.00324 * 16 2 1 19 19 C 1.46499 * 120.00024 * 180.02562 * 18 16 2 20 20 C 1.50698 * 109.46737 * 179.97438 * 19 18 16 21 21 H 1.07992 * 120.00724 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99553 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00187 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99923 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47196 * 60.00077 * 24 22 20 26 26 H 1.48501 * 109.47365 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47292 * 300.00292 * 24 22 20 28 28 H 1.08998 * 109.47639 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46890 * 299.99697 * 1 2 3 30 30 H 1.09001 * 109.47313 * 59.99618 * 1 2 3 31 31 H 0.96705 * 113.99781 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47196 * 299.99847 * 4 2 1 33 33 H 1.09001 * 109.47034 * 179.97438 * 4 2 1 34 34 H 0.96994 * 126.88427 * 180.02562 * 8 6 5 35 35 H 1.08998 * 110.09894 * 241.41709 * 10 9 8 36 36 H 1.09002 * 110.09685 * 3.01818 * 10 9 8 37 37 H 1.09002 * 110.48168 * 95.19173 * 11 10 9 38 38 H 1.09000 * 110.48342 * 217.82084 * 11 10 9 39 39 H 1.09003 * 110.73615 * 279.15137 * 12 11 10 40 40 H 1.09002 * 110.74069 * 155.83195 * 12 11 10 41 41 H 1.09000 * 110.52285 * 19.57664 * 13 9 8 42 42 H 1.08998 * 110.52753 * 142.32745 * 13 9 8 43 43 H 0.97002 * 119.99624 * 359.97438 * 18 16 2 44 44 H 1.09005 * 109.46448 * 299.99127 * 19 18 16 45 45 H 1.08998 * 109.47574 * 59.99021 * 19 18 16 46 46 H 0.97005 * 120.00223 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 1.5515 -0.0306 -2.4454 6 6 2.2051 0.9636 -3.0606 7 8 3.2775 1.3990 -2.6895 8 7 1.5396 1.4268 -4.1376 9 6 0.3098 0.6373 -4.2293 10 6 -0.9327 1.5264 -4.1382 11 6 -1.7399 1.2759 -5.4314 12 6 -0.6866 0.7586 -6.4434 13 6 0.2365 -0.1214 -5.5610 14 6 0.3863 -0.3171 -3.0651 15 8 -0.4254 -1.1612 -2.7515 16 6 2.0324 -0.7105 1.2303 17 8 2.3207 -1.8873 1.1758 18 7 2.1611 -0.0382 2.3914 19 6 2.6501 -0.7288 3.5874 20 6 2.7012 0.2397 4.7408 21 1 2.4000 1.2668 4.5975 22 6 3.1325 -0.1858 5.9794 23 7 3.4997 -1.4364 6.1540 24 14 3.1965 1.0147 7.4092 25 1 1.8357 1.5499 7.6675 26 1 3.6920 0.3148 8.6215 27 1 4.1134 2.1341 7.0750 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.9704 1.4235 -0.0004 32 1 1.6766 -1.7489 -1.2494 33 1 3.1299 -0.7208 -1.2496 34 1 1.8197 2.1396 -4.7328 35 1 -1.5269 1.2516 -3.2667 36 1 -0.6396 2.5745 -4.0768 37 1 -2.5081 0.5215 -5.2614 38 1 -2.1875 2.2038 -5.7875 39 1 -0.1287 1.5882 -6.8778 40 1 -1.1603 0.1609 -7.2222 41 1 1.2270 -0.2047 -6.0084 42 1 -0.2021 -1.1085 -5.4149 43 1 1.9307 0.9030 2.4349 44 1 1.9778 -1.5511 3.8324 45 1 3.6494 -1.1206 3.3977 46 1 3.8035 -1.7357 7.0253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357108204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:06 Heat of formation + Delta-G solvation = -136.232508 kcal Electronic energy + Delta-G solvation = -30913.670748 eV Core-core repulsion = 26610.853477 eV Total energy + Delta-G solvation = -4302.817270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.96234 -39.75592 -38.93424 -38.12202 -36.68714 -35.81136 -34.42347 -33.87006 -32.29143 -31.33618 -29.47072 -28.65336 -27.52577 -27.23486 -24.00870 -23.67777 -22.34655 -21.43457 -20.99851 -20.44576 -19.65376 -18.46830 -17.89790 -17.18706 -16.83422 -16.40752 -16.16682 -15.55079 -15.43087 -15.34363 -15.15231 -14.92070 -14.79318 -14.59177 -14.43045 -13.81625 -13.68166 -13.19247 -12.83185 -12.62336 -12.39944 -12.30428 -12.16701 -12.08806 -11.88640 -11.82844 -11.72172 -11.69663 -11.61249 -11.17524 -11.10904 -11.01068 -10.93864 -10.87509 -10.33700 -10.31500 -9.87965 -9.72558 -9.43591 -8.87888 -8.75463 -7.95869 -6.17607 -4.24725 1.37215 1.95423 2.80331 2.83707 3.11589 3.25959 3.30529 3.32207 3.56297 3.85606 3.90563 3.93753 4.19841 4.34926 4.52757 4.59017 4.67136 4.74053 4.79177 4.85946 5.04325 5.10882 5.18577 5.20653 5.25258 5.34763 5.38470 5.42790 5.51542 5.56494 5.58994 5.66965 5.72361 5.76878 5.82735 6.13196 6.51353 6.85249 7.14363 7.22333 7.32092 7.46585 7.52216 7.66856 7.93313 7.94274 8.54189 8.71621 8.98127 9.41563 10.92454 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026456 B = 0.002468 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.106539 B =11342.523864 C =11421.491680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.103 3.897 3 O -0.544 6.544 4 C 0.107 3.893 5 N -0.567 5.567 6 C 0.707 3.293 7 O -0.535 6.535 8 N -0.719 5.719 9 C 0.117 3.883 10 C -0.118 4.118 11 C -0.123 4.123 12 C -0.122 4.122 13 C -0.121 4.121 14 C 0.532 3.468 15 O -0.457 6.457 16 C 0.479 3.521 17 O -0.551 6.551 18 N -0.695 5.695 19 C 0.248 3.752 20 C -0.544 4.544 21 H 0.063 0.937 22 C 0.064 3.936 23 N -0.886 5.886 24 Si 0.905 3.095 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.386 0.614 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.438 0.562 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.397 0.603 44 H 0.029 0.971 45 H 0.029 0.971 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.284 6.940 -27.255 29.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.057 3.943 3 O -0.351 6.351 4 C -0.015 4.015 5 N -0.313 5.313 6 C 0.408 3.592 7 O -0.408 6.408 8 N -0.384 5.384 9 C 0.025 3.975 10 C -0.157 4.157 11 C -0.160 4.160 12 C -0.159 4.159 13 C -0.159 4.159 14 C 0.318 3.682 15 O -0.325 6.325 16 C 0.261 3.739 17 O -0.430 6.430 18 N -0.343 5.343 19 C 0.128 3.872 20 C -0.582 4.582 21 H 0.081 0.919 22 C -0.140 4.140 23 N -0.523 5.523 24 Si 0.732 3.268 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.236 0.764 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.283 0.717 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.231 0.769 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.454 5.794 -26.615 28.833 hybrid contribution 0.760 1.213 0.738 1.611 sum -8.694 7.008 -25.877 28.184 Atomic orbital electron populations 1.21710 0.90386 1.03611 1.03083 1.21794 0.97035 0.83229 0.92205 1.86516 1.27951 1.23852 1.96768 1.22200 1.01555 0.97001 0.80779 1.46360 1.21853 1.34839 1.28219 1.15920 0.83606 0.79439 0.80250 1.90999 1.20011 1.61476 1.68265 1.45522 1.21651 1.40238 1.30992 1.21508 0.87861 0.91933 0.96175 1.22337 0.93560 0.99559 1.00246 1.22438 0.97883 1.01930 0.93787 1.22559 0.96633 0.99165 0.97559 1.22606 1.01874 0.99558 0.91902 1.20567 0.80706 0.83421 0.83457 1.90822 1.41829 1.32002 1.67865 1.20782 0.79824 0.87781 0.85481 1.90692 1.51152 1.15794 1.85412 1.46460 1.63408 1.14226 1.10210 1.19178 0.95114 0.93075 0.79869 1.21176 1.46295 0.96456 0.94321 0.91856 1.24948 0.94730 0.95449 0.98840 1.69962 1.42773 1.15295 1.24264 0.86457 0.78558 0.80712 0.81088 1.20041 1.21065 1.20020 0.89914 0.90775 0.92200 0.76446 0.86529 0.87759 0.71711 0.89881 0.89469 0.90608 0.90664 0.90962 0.90462 0.89740 0.89148 0.76872 0.95342 0.95342 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 7.85 37.16 0.29 -1.58 16 2 C 0.10 1.58 1.08 -91.77 -0.10 1.48 16 3 O -0.54 -7.99 11.47 -35.23 -0.40 -8.39 16 4 C 0.11 1.51 4.44 -4.04 -0.02 1.49 16 5 N -0.57 -6.93 2.30 -120.86 -0.28 -7.21 16 6 C 0.71 8.45 8.19 -87.63 -0.72 7.73 16 7 O -0.53 -7.99 17.16 5.33 0.09 -7.90 16 8 N -0.72 -5.65 5.79 -53.50 -0.31 -5.96 16 9 C 0.12 0.89 1.23 -132.73 -0.16 0.72 16 10 C -0.12 -0.74 6.30 -25.92 -0.16 -0.90 16 11 C -0.12 -0.54 6.85 -24.91 -0.17 -0.71 16 12 C -0.12 -0.47 6.92 -24.59 -0.17 -0.64 16 13 C -0.12 -0.69 6.13 -25.40 -0.16 -0.84 16 14 C 0.53 5.94 5.00 -10.84 -0.05 5.88 16 15 O -0.46 -6.02 16.88 5.59 0.09 -5.93 16 16 C 0.48 9.51 6.69 -10.98 -0.07 9.44 16 17 O -0.55 -12.79 16.10 5.56 0.09 -12.70 16 18 N -0.70 -14.81 5.46 -61.47 -0.34 -15.15 16 19 C 0.25 6.58 5.43 -5.20 -0.03 6.55 16 20 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 21 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 22 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 24 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.79 6.19 -51.93 -0.32 0.47 16 31 H 0.39 5.28 8.98 45.56 0.41 5.68 16 32 H 0.12 1.70 7.75 -51.93 -0.40 1.30 16 33 H 0.10 1.49 7.86 -51.93 -0.41 1.08 16 34 H 0.44 2.35 8.96 -40.82 -0.37 1.98 16 35 H 0.08 0.62 7.72 -51.93 -0.40 0.22 16 36 H 0.09 0.48 7.96 -51.93 -0.41 0.06 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.44 8.04 -51.93 -0.42 0.02 16 42 H 0.09 0.58 7.88 -51.93 -0.41 0.17 16 43 H 0.40 7.68 7.76 -40.82 -0.32 7.36 16 44 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -33.85 380.26 -7.51 -41.36 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.96 Total: 10.37 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -1.94 Total: 15.13 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.19 Total: -53.68 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.13 Total: -34.92 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.85 -7.51 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357108204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.874 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds