Wall clock time and date at job start Tue Mar 31 2020 22:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47248 * 2 1 4 4 C 1.53005 * 109.46775 * 240.00430 * 2 1 3 5 5 N 1.46494 * 109.47385 * 59.99850 * 4 2 1 6 6 C 1.33939 * 124.20952 * 90.02493 * 5 4 2 7 7 O 1.21537 * 123.79687 * 0.02562 * 6 5 4 8 8 N 1.34817 * 112.39748 * 180.02562 * 6 5 4 9 9 C 1.46429 * 106.22443 * 359.97438 * 8 6 5 10 10 C 1.53056 * 111.39897 * 120.28528 * 9 8 6 11 11 C 1.54492 * 106.26552 * 122.21589 * 10 9 8 12 12 C 1.54962 * 104.22046 * 336.50783 * 11 10 9 13 13 C 1.53446 * 111.16565 * 240.11580 * 9 8 6 14 14 C 1.35050 * 124.21063 * 270.02473 * 5 4 2 15 15 O 1.21237 * 127.35297 * 0.02562 * 14 5 4 16 16 C 1.50698 * 109.47553 * 120.00514 * 2 1 3 17 17 O 1.21281 * 119.99994 * 94.98804 * 16 2 1 18 18 N 1.34781 * 119.99950 * 275.00324 * 16 2 1 19 19 C 1.46499 * 120.00024 * 180.02562 * 18 16 2 20 20 C 1.50698 * 109.46737 * 179.97438 * 19 18 16 21 21 H 1.07992 * 120.00724 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99553 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00187 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99923 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47196 * 60.00077 * 24 22 20 26 26 H 1.48501 * 109.47365 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47292 * 300.00292 * 24 22 20 28 28 H 1.08998 * 109.47639 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46890 * 299.99697 * 1 2 3 30 30 H 1.09001 * 109.47313 * 59.99618 * 1 2 3 31 31 H 0.96705 * 113.99781 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47196 * 299.99847 * 4 2 1 33 33 H 1.09001 * 109.47034 * 179.97438 * 4 2 1 34 34 H 0.96994 * 126.88427 * 180.02562 * 8 6 5 35 35 H 1.08998 * 110.09894 * 241.41709 * 10 9 8 36 36 H 1.09002 * 110.09685 * 3.01818 * 10 9 8 37 37 H 1.09002 * 110.48168 * 95.19173 * 11 10 9 38 38 H 1.09000 * 110.48342 * 217.82084 * 11 10 9 39 39 H 1.09003 * 110.73615 * 279.15137 * 12 11 10 40 40 H 1.09002 * 110.74069 * 155.83195 * 12 11 10 41 41 H 1.09000 * 110.52285 * 19.57664 * 13 9 8 42 42 H 1.08998 * 110.52753 * 142.32745 * 13 9 8 43 43 H 0.97002 * 119.99624 * 359.97438 * 18 16 2 44 44 H 1.09005 * 109.46448 * 299.99127 * 19 18 16 45 45 H 1.08998 * 109.47574 * 59.99021 * 19 18 16 46 46 H 0.97005 * 120.00223 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 1.5515 -0.0306 -2.4454 6 6 2.2051 0.9636 -3.0606 7 8 3.2775 1.3990 -2.6895 8 7 1.5396 1.4268 -4.1376 9 6 0.3098 0.6373 -4.2293 10 6 -0.9327 1.5264 -4.1382 11 6 -1.7399 1.2759 -5.4314 12 6 -0.6866 0.7586 -6.4434 13 6 0.2365 -0.1214 -5.5610 14 6 0.3863 -0.3171 -3.0651 15 8 -0.4254 -1.1612 -2.7515 16 6 2.0324 -0.7105 1.2303 17 8 2.3207 -1.8873 1.1758 18 7 2.1611 -0.0382 2.3914 19 6 2.6501 -0.7288 3.5874 20 6 2.7012 0.2397 4.7408 21 1 2.4000 1.2668 4.5975 22 6 3.1325 -0.1858 5.9794 23 7 3.4997 -1.4364 6.1540 24 14 3.1965 1.0147 7.4092 25 1 1.8357 1.5499 7.6675 26 1 3.6920 0.3148 8.6215 27 1 4.1134 2.1341 7.0750 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.9704 1.4235 -0.0004 32 1 1.6766 -1.7489 -1.2494 33 1 3.1299 -0.7208 -1.2496 34 1 1.8197 2.1396 -4.7328 35 1 -1.5269 1.2516 -3.2667 36 1 -0.6396 2.5745 -4.0768 37 1 -2.5081 0.5215 -5.2614 38 1 -2.1875 2.2038 -5.7875 39 1 -0.1287 1.5882 -6.8778 40 1 -1.1603 0.1609 -7.2222 41 1 1.2270 -0.2047 -6.0084 42 1 -0.2021 -1.1085 -5.4149 43 1 1.9307 0.9030 2.4349 44 1 1.9778 -1.5511 3.8324 45 1 3.6494 -1.1206 3.3977 46 1 3.8035 -1.7357 7.0253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357108204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:06 Heat of formation + Delta-G solvation = -164.234620 kcal Electronic energy + Delta-G solvation = -30914.885010 eV Core-core repulsion = 26610.853477 eV Total energy + Delta-G solvation = -4304.031533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.84004 -41.26924 -39.87010 -38.98178 -38.00222 -36.78380 -36.28065 -34.84029 -34.30375 -32.55118 -29.90616 -29.53517 -29.25338 -28.39147 -25.69063 -24.53743 -23.95626 -22.15494 -21.79540 -21.28024 -21.12225 -19.86356 -18.99602 -18.25771 -18.07752 -17.60069 -17.22067 -17.00908 -16.73245 -16.44615 -16.35947 -16.21219 -15.98454 -15.59363 -15.39867 -15.29165 -14.90266 -14.36595 -14.10129 -13.94236 -13.64857 -13.48869 -13.38892 -13.32350 -13.17428 -13.03598 -12.91420 -12.70736 -12.68637 -12.34497 -12.23431 -12.10729 -12.03216 -11.86290 -11.54968 -11.47452 -11.24290 -11.06974 -10.82457 -10.53743 -10.38131 -9.94176 -8.31412 -6.48114 0.48191 0.99640 1.41838 1.43884 1.46229 1.53895 1.84902 2.08668 2.24568 2.43336 2.82571 2.91802 3.03298 3.31181 3.36554 3.43993 3.55205 3.68307 4.03826 4.16514 4.21582 4.26560 4.37090 4.40466 4.42477 4.48432 4.57654 4.60383 4.70495 4.82025 4.92725 4.99838 5.03979 5.07527 5.18941 5.23711 5.23845 5.40172 5.45848 5.58294 5.80081 5.80339 5.96843 6.25266 6.31286 6.60436 6.75486 7.07028 7.16473 7.30913 8.80259 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026456 B = 0.002468 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.106539 B =11342.523864 C =11421.491680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.121 3.879 3 O -0.538 6.538 4 C 0.111 3.889 5 N -0.570 5.570 6 C 0.703 3.297 7 O -0.568 6.568 8 N -0.695 5.695 9 C 0.123 3.877 10 C -0.118 4.118 11 C -0.119 4.119 12 C -0.114 4.114 13 C -0.120 4.120 14 C 0.525 3.475 15 O -0.480 6.480 16 C 0.479 3.521 17 O -0.586 6.586 18 N -0.691 5.691 19 C 0.265 3.735 20 C -0.558 4.558 21 H 0.081 0.919 22 C 0.006 3.994 23 N -0.928 5.928 24 Si 0.984 3.016 25 H -0.263 1.263 26 H -0.284 1.284 27 H -0.263 1.263 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.392 0.608 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.453 0.547 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.410 0.590 44 H -0.008 1.008 45 H -0.007 1.007 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 9.654 -28.958 32.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.075 3.925 3 O -0.346 6.346 4 C -0.012 4.012 5 N -0.315 5.315 6 C 0.404 3.596 7 O -0.443 6.443 8 N -0.360 5.360 9 C 0.032 3.968 10 C -0.157 4.157 11 C -0.157 4.157 12 C -0.151 4.151 13 C -0.158 4.158 14 C 0.313 3.687 15 O -0.350 6.350 16 C 0.264 3.736 17 O -0.467 6.467 18 N -0.340 5.340 19 C 0.143 3.857 20 C -0.596 4.596 21 H 0.099 0.901 22 C -0.194 4.194 23 N -0.567 5.567 24 Si 0.806 3.194 25 H -0.187 1.187 26 H -0.209 1.209 27 H -0.187 1.187 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.242 0.758 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.301 0.699 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.246 0.754 44 H 0.010 0.990 45 H 0.011 0.989 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.605 8.561 -28.398 31.499 hybrid contribution 1.093 0.301 1.199 1.650 sum -9.512 8.862 -27.199 30.146 Atomic orbital electron populations 1.21690 0.89210 1.03518 1.03923 1.21561 0.97595 0.83151 0.90146 1.86513 1.28607 1.22909 1.96549 1.21951 1.01331 0.96661 0.81282 1.46369 1.22462 1.35036 1.27652 1.16050 0.83356 0.79275 0.80951 1.90979 1.21451 1.62521 1.69393 1.45424 1.21004 1.39952 1.29656 1.21652 0.88210 0.91478 0.95446 1.22391 0.92670 0.99731 1.00871 1.22447 0.97695 1.02697 0.92855 1.22572 0.96017 0.99337 0.97182 1.22652 1.02918 0.99324 0.90950 1.21227 0.79818 0.83541 0.84070 1.90809 1.42411 1.33139 1.68676 1.21614 0.78364 0.87418 0.86211 1.90670 1.52301 1.17699 1.86075 1.46192 1.63729 1.14654 1.09440 1.18635 0.92460 0.92608 0.82022 1.21545 1.46269 0.97179 0.94619 0.90129 1.26031 0.93910 0.97327 1.02100 1.70118 1.43689 1.17656 1.25203 0.85226 0.79203 0.78123 0.76800 1.18740 1.20904 1.18746 0.90537 0.90516 0.90688 0.75755 0.87337 0.88174 0.69929 0.91220 0.88174 0.91149 0.88942 0.89313 0.89382 0.88962 0.89985 0.75408 0.98996 0.98862 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 7.85 71.98 0.56 -3.00 16 2 C 0.12 3.74 1.08 -11.54 -0.01 3.73 16 3 O -0.54 -15.37 11.47 -148.98 -1.71 -17.08 16 4 C 0.11 3.19 4.44 86.38 0.38 3.58 16 5 N -0.57 -13.64 2.30 -773.31 -1.78 -15.42 16 6 C 0.70 16.00 8.19 179.30 1.47 17.47 16 7 O -0.57 -16.57 17.16 -3.83 -0.07 -16.64 16 8 N -0.69 -9.36 5.79 -441.44 -2.56 -11.92 16 9 C 0.12 1.62 1.23 3.05 0.00 1.63 16 10 C -0.12 -1.17 6.30 31.12 0.20 -0.98 16 11 C -0.12 -0.69 6.85 31.77 0.22 -0.48 16 12 C -0.11 -0.48 6.92 31.98 0.22 -0.26 16 13 C -0.12 -1.08 6.13 31.46 0.19 -0.89 16 14 C 0.53 11.31 5.00 87.63 0.44 11.74 16 15 O -0.48 -12.58 16.88 -2.90 -0.05 -12.63 16 16 C 0.48 19.62 6.69 87.66 0.59 20.20 16 17 O -0.59 -28.51 16.10 -3.03 -0.05 -28.56 16 18 N -0.69 -30.18 5.46 -466.78 -2.55 -32.72 16 19 C 0.27 14.68 5.43 85.63 0.46 15.14 16 20 C -0.56 -30.79 9.28 25.60 0.24 -30.55 16 21 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 22 C 0.01 0.35 5.46 84.66 0.46 0.81 16 23 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 24 Si 0.98 42.81 29.54 68.60 2.03 44.83 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.07 1.90 6.19 -2.39 -0.01 1.89 16 31 H 0.39 10.49 8.98 -74.05 -0.67 9.83 16 32 H 0.11 3.31 7.75 -2.39 -0.02 3.29 16 33 H 0.10 2.95 7.86 -2.39 -0.02 2.93 16 34 H 0.45 3.52 8.96 -92.71 -0.83 2.69 16 35 H 0.07 0.92 7.72 -2.39 -0.02 0.90 16 36 H 0.10 0.76 7.96 -2.39 -0.02 0.74 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.09 0.71 8.04 -2.39 -0.02 0.70 16 42 H 0.08 0.93 7.88 -2.39 -0.02 0.91 16 43 H 0.41 15.77 7.76 -92.71 -0.72 15.05 16 44 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 45 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 46 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -75.49 380.26 -2.19 -77.68 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -1.17 Total: 30.14 kcal Atomic # 6 Polarization: 32.72 SS G_CDS: 5.42 Total: 38.15 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -6.60 Total: -115.89 kcal Atomic # 8 Polarization: -73.04 SS G_CDS: -1.87 Total: -74.91 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -75.49 -2.19 -77.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357108204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.554 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds