Wall clock time and date at job start Tue Mar 31 2020 22:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 C 1.52997 * 109.47122 * 120.00204 * 2 1 3 5 5 O 1.45199 * 109.46944 * 240.00240 * 2 1 3 6 6 C 1.34635 * 117.00007 * 59.99926 * 5 2 1 7 7 O 1.21512 * 120.00221 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00018 * 179.97438 * 6 5 2 9 9 C 1.46925 * 120.57634 * 359.72391 * 8 6 5 10 10 C 1.52804 * 108.98134 * 234.02211 * 9 8 6 11 11 C 1.52510 * 109.45442 * 306.41899 * 10 9 8 12 12 C 1.52509 * 110.80309 * 59.98114 * 11 10 9 13 13 C 1.46920 * 120.57679 * 180.02562 * 8 6 5 14 14 N 1.46856 * 110.47084 * 297.20959 * 11 10 9 15 15 C 1.34678 * 106.41624 * 241.47787 * 14 11 10 16 16 O 1.21526 * 123.78904 * 180.02562 * 15 14 11 17 17 N 1.33872 * 112.42284 * 0.02562 * 15 14 11 18 18 C 1.37511 * 124.19480 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99924 * 32.77375 * 18 17 15 20 20 C 1.38892 * 120.00221 * 212.77113 * 18 17 15 21 21 N 1.31385 * 119.99497 * 19.93603 * 20 18 17 22 22 Si 1.86793 * 120.00139 * 199.93203 * 20 18 17 23 23 H 1.48504 * 109.47256 * 90.00344 * 22 20 18 24 24 H 1.48508 * 109.47325 * 210.00092 * 22 20 18 25 25 H 1.48502 * 109.47169 * 329.99921 * 22 20 18 26 26 C 1.34907 * 111.60826 * 359.97438 * 17 15 14 27 27 O 1.21241 * 127.25398 * 180.02562 * 26 17 15 28 28 H 1.09000 * 109.47409 * 59.99572 * 1 2 3 29 29 H 1.09002 * 109.47267 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47288 * 299.99909 * 1 2 3 31 31 H 1.09003 * 109.47216 * 60.00354 * 3 2 1 32 32 H 1.08994 * 109.47308 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47344 * 300.00468 * 3 2 1 34 34 H 1.09002 * 109.46974 * 59.99913 * 4 2 1 35 35 H 1.08994 * 109.47012 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.47417 * 299.99981 * 4 2 1 37 37 H 1.09004 * 109.59370 * 353.84650 * 9 8 6 38 38 H 1.08997 * 109.59396 * 114.29628 * 9 8 6 39 39 H 1.09003 * 109.56058 * 186.35850 * 10 9 8 40 40 H 1.09002 * 109.34415 * 66.34761 * 10 9 8 41 41 H 1.09001 * 109.48781 * 179.91659 * 12 11 10 42 42 H 1.09001 * 109.50201 * 59.86322 * 12 11 10 43 43 H 1.09000 * 109.59832 * 245.70116 * 13 8 6 44 44 H 1.09001 * 109.59547 * 6.15823 * 13 8 6 45 45 H 0.96995 * 126.79154 * 61.52485 * 14 11 10 46 46 H 0.97006 * 119.99731 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1856 6 6 1.6522 -0.1728 -2.3772 7 8 0.9516 0.8189 -2.4252 8 7 2.0679 -0.7599 -3.5169 9 6 2.9213 -1.9552 -3.4737 10 6 4.1745 -1.7016 -4.3104 11 6 3.7685 -1.2528 -5.7103 12 6 2.9484 0.0316 -5.6507 13 6 1.6812 -0.2119 -4.8241 14 7 3.0139 -2.3130 -6.3909 15 6 3.7295 -2.6497 -7.4810 16 8 3.3893 -3.5041 -8.2754 17 7 4.8577 -1.9375 -7.5913 18 6 5.7675 -2.0839 -8.6119 19 1 5.4299 -2.3547 -9.6015 20 6 7.1205 -1.8837 -8.3703 21 7 7.5844 -1.9439 -7.1426 22 14 8.2804 -1.5290 -9.7909 23 1 8.3572 -0.0626 -10.0129 24 1 9.6324 -2.0522 -9.4686 25 1 7.7740 -2.1900 -11.0204 26 6 4.9913 -1.0582 -6.5768 27 8 5.9007 -0.2765 -6.3981 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 -1.7489 1.2491 35 1 3.1299 -0.7217 1.2489 36 1 1.6767 -0.2075 2.1392 37 1 3.2077 -2.1627 -2.4427 38 1 2.3782 -2.8070 -3.8831 39 1 4.7598 -2.6187 -4.3781 40 1 4.7725 -0.9223 -3.8379 41 1 2.6714 0.3334 -6.6608 42 1 3.5400 0.8199 -5.1850 43 1 1.0379 -0.9228 -5.3427 44 1 1.1503 0.7295 -4.6832 45 1 2.1673 -2.6948 -6.1111 46 1 8.5295 -1.8044 -6.9739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364680117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:19 Heat of formation + Delta-G solvation = -134.678136 kcal Electronic energy + Delta-G solvation = -31541.270098 eV Core-core repulsion = 27238.520230 eV Total energy + Delta-G solvation = -4302.749868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.33136 -41.83384 -39.60212 -38.96064 -37.73492 -36.46228 -35.89773 -34.90775 -33.62323 -32.39729 -32.00106 -28.30171 -28.23901 -28.10315 -26.68407 -24.79148 -24.13304 -22.99532 -22.28839 -21.35446 -20.26325 -19.31101 -19.05308 -18.09905 -17.71038 -17.52703 -17.25965 -17.01746 -16.44768 -16.23457 -16.06937 -15.70024 -15.62939 -15.48525 -15.05032 -14.95665 -14.68739 -14.57680 -14.34240 -13.68434 -13.65173 -13.54356 -13.22345 -13.04003 -12.98501 -12.88504 -12.85092 -12.80670 -12.46218 -12.44152 -12.32908 -12.20746 -12.16401 -12.12335 -11.59541 -11.33356 -11.31106 -11.03025 -10.68070 -10.37170 -10.01182 -9.79568 -8.51055 -6.33581 1.08956 1.11152 1.37594 1.42694 1.52389 1.75481 1.86523 2.31594 2.45589 2.68328 2.80927 3.10350 3.34069 3.53849 3.62980 3.80930 3.86100 3.88215 4.00637 4.05243 4.17476 4.37117 4.48121 4.56004 4.65374 4.67348 4.70034 4.72568 4.80940 4.82699 4.87696 4.92619 4.93698 4.97863 5.04910 5.16674 5.32446 5.34061 5.34590 5.43094 5.50639 5.88343 6.02271 6.27563 6.31995 6.70237 7.16286 7.20753 7.27028 7.82823 8.59024 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022484 B = 0.003031 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.047079 B = 9234.981874 C = 9699.727551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.124 3.876 3 C -0.181 4.181 4 C -0.136 4.136 5 O -0.365 6.365 6 C 0.653 3.347 7 O -0.588 6.588 8 N -0.593 5.593 9 C 0.126 3.874 10 C -0.117 4.117 11 C 0.137 3.863 12 C -0.118 4.118 13 C 0.139 3.861 14 N -0.705 5.705 15 C 0.674 3.326 16 O -0.604 6.604 17 N -0.430 5.430 18 C -0.385 4.385 19 H 0.091 0.909 20 C 0.015 3.985 21 N -0.858 5.858 22 Si 0.995 3.005 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.258 1.258 26 C 0.490 3.510 27 O -0.497 6.497 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.441 0.559 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.641 3.398 17.356 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.088 3.912 3 C -0.238 4.238 4 C -0.193 4.193 5 O -0.280 6.280 6 C 0.408 3.592 7 O -0.479 6.479 8 N -0.334 5.334 9 C 0.004 3.996 10 C -0.156 4.156 11 C 0.046 3.954 12 C -0.157 4.157 13 C 0.018 3.982 14 N -0.371 5.371 15 C 0.377 3.623 16 O -0.484 6.484 17 N -0.162 5.162 18 C -0.511 4.511 19 H 0.109 0.891 20 C -0.194 4.194 21 N -0.490 5.490 22 Si 0.817 3.183 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.182 1.182 26 C 0.278 3.722 27 O -0.369 6.369 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.124 0.876 45 H 0.288 0.712 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.300 3.688 17.183 21.452 hybrid contribution 0.668 -0.067 -0.794 1.040 sum -11.632 3.622 16.389 20.421 Atomic orbital electron populations 1.22453 0.93649 1.03012 1.04322 1.22411 0.94786 0.92419 0.81604 1.22478 1.01421 0.95569 1.04316 1.21880 1.02288 1.01315 0.93826 1.86309 1.71446 1.56496 1.13734 1.18056 0.78590 0.80952 0.81557 1.90877 1.42587 1.27439 1.87044 1.47059 1.52425 1.30306 1.03578 1.21648 0.89168 0.86585 1.02231 1.21826 0.99081 1.03075 0.91625 1.20903 0.90287 0.90312 0.93910 1.21970 0.96961 0.94374 1.02430 1.21619 0.94998 1.01795 0.79789 1.45276 1.25511 1.41376 1.24949 1.16552 0.82027 0.80990 0.82695 1.90786 1.74354 1.36089 1.47219 1.42168 1.18988 1.30749 1.24345 1.19516 0.87010 1.55004 0.89537 0.89118 1.26249 0.98667 0.94342 1.00100 1.69981 1.15741 1.41237 1.22082 0.84929 0.76825 0.78723 0.77820 1.19787 1.19648 1.18221 1.20812 0.87488 0.80726 0.83169 1.90566 1.36020 1.37070 1.73263 0.91811 0.91820 0.89220 0.89099 0.92456 0.91886 0.91025 0.91558 0.88024 0.87038 0.88818 0.90424 0.90251 0.89150 0.89974 0.88485 0.87595 0.71219 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 8.37 71.98 0.60 -2.31 16 2 C 0.12 2.17 1.13 -10.80 -0.01 2.16 16 3 C -0.18 -3.29 8.37 71.98 0.60 -2.69 16 4 C -0.14 -1.59 8.85 71.98 0.64 -0.96 16 5 O -0.37 -8.05 8.52 -55.45 -0.47 -8.52 16 6 C 0.65 16.20 7.73 129.79 1.00 17.20 16 7 O -0.59 -16.67 11.29 19.80 0.22 -16.44 16 8 N -0.59 -13.27 2.97 -949.92 -2.82 -16.09 16 9 C 0.13 2.61 6.22 86.23 0.54 3.15 16 10 C -0.12 -3.36 5.13 30.37 0.16 -3.21 16 11 C 0.14 4.60 0.83 2.60 0.00 4.60 16 12 C -0.12 -3.22 5.15 30.51 0.16 -3.07 16 13 C 0.14 2.97 6.23 86.38 0.54 3.51 16 14 N -0.70 -23.12 5.19 -442.59 -2.30 -25.42 16 15 C 0.67 31.43 8.58 179.37 1.54 32.97 16 16 O -0.60 -31.85 17.63 -3.80 -0.07 -31.92 16 17 N -0.43 -22.51 2.70 -598.70 -1.62 -24.13 16 18 C -0.38 -22.05 9.47 83.96 0.79 -21.26 16 19 H 0.09 5.24 7.91 -2.91 -0.02 5.22 16 20 C 0.01 0.81 4.82 84.92 0.41 1.22 16 21 N -0.86 -49.28 11.19 21.65 0.24 -49.03 16 22 Si 1.00 43.64 29.60 68.60 2.03 45.67 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 C 0.49 23.47 6.20 87.77 0.54 24.02 16 27 O -0.50 -27.11 15.42 -2.91 -0.04 -27.15 16 28 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.50 5.88 -2.39 -0.01 1.48 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 2.09 6.92 -2.39 -0.02 2.07 16 38 H 0.09 1.61 7.51 -2.39 -0.02 1.59 16 39 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.10 1.68 7.50 -2.39 -0.02 1.66 16 44 H 0.11 2.29 7.00 -2.39 -0.02 2.27 16 45 H 0.44 10.91 7.90 -92.71 -0.73 10.17 16 46 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -76.31 367.28 2.97 -73.34 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.28 Total: 24.35 kcal Atomic # 6 Polarization: 47.82 SS G_CDS: 7.51 Total: 55.34 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -6.50 Total: -114.67 kcal Atomic # 8 Polarization: -83.67 SS G_CDS: -0.36 Total: -84.03 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -76.31 2.97 -73.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364680117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.335 kcal (2) G-P(sol) polarization free energy of solvation -76.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds