Wall clock time and date at job start Tue Mar 31 2020 22:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47187 * 2 1 4 4 C 1.53002 * 109.46970 * 239.99897 * 2 1 3 5 5 O 1.45203 * 109.47042 * 120.00026 * 2 1 3 6 6 C 1.34638 * 116.99992 * 59.99471 * 5 2 1 7 7 O 1.21516 * 120.00287 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00238 * 179.97438 * 6 5 2 9 9 C 1.47140 * 125.60713 * 0.03522 * 8 6 5 10 10 C 1.54586 * 107.32430 * 180.91456 * 9 8 6 11 11 C 1.54006 * 102.81538 * 20.90017 * 10 9 8 12 12 C 1.47701 * 125.61307 * 180.02562 * 8 6 5 13 13 N 1.45800 * 112.20180 * 87.23584 * 11 10 9 14 14 C 1.35020 * 105.93297 * 122.11031 * 13 11 10 15 15 O 1.21538 * 123.82382 * 180.02562 * 14 13 11 16 16 N 1.34038 * 112.35727 * 359.97438 * 14 13 11 17 17 C 1.46503 * 124.22395 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.47020 * 89.97574 * 17 16 14 19 19 H 1.07997 * 119.99804 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00180 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99615 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99924 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47392 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46822 * 120.00201 * 22 20 18 25 25 H 1.48501 * 109.47194 * 240.00052 * 22 20 18 26 26 C 1.35252 * 111.54812 * 0.02562 * 16 14 13 27 27 O 1.21235 * 127.49743 * 180.02562 * 26 16 14 28 28 H 1.08998 * 109.47491 * 299.99827 * 1 2 3 29 29 H 1.08998 * 109.47478 * 59.99904 * 1 2 3 30 30 H 1.09005 * 109.47533 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46801 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47168 * 299.99874 * 3 2 1 33 33 H 1.08998 * 109.46764 * 59.99727 * 3 2 1 34 34 H 1.08995 * 109.47181 * 299.99854 * 4 2 1 35 35 H 1.08999 * 109.47194 * 60.00242 * 4 2 1 36 36 H 1.09003 * 109.46956 * 180.02562 * 4 2 1 37 37 H 1.08995 * 109.87385 * 300.35305 * 9 8 6 38 38 H 1.08996 * 109.87199 * 61.33882 * 9 8 6 39 39 H 1.08997 * 110.74504 * 139.22529 * 10 9 8 40 40 H 1.09000 * 110.74763 * 262.38536 * 10 9 8 41 41 H 1.09002 * 110.39179 * 276.20964 * 12 8 6 42 42 H 1.09000 * 110.38708 * 38.47928 * 12 8 6 43 43 H 0.97002 * 127.03433 * 302.12693 * 13 11 10 44 44 H 1.08994 * 109.47133 * 209.97568 * 17 16 14 45 45 H 1.09004 * 109.47428 * 329.97598 * 17 16 14 46 46 H 0.97001 * 119.99617 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9514 -2.5097 0.5037 8 7 2.0679 -2.6658 2.4167 9 6 2.9159 -2.1404 3.4983 10 6 3.1513 -3.2939 4.5002 11 6 2.8606 -4.5468 3.6531 12 6 1.7471 -4.0779 2.7072 13 7 4.0403 -5.0105 2.9326 14 6 4.2413 -6.2846 3.3317 15 8 5.1489 -6.9849 2.9280 16 7 3.3272 -6.6895 4.2245 17 6 3.2997 -8.0240 4.8283 18 6 4.1195 -8.0202 6.0928 19 1 4.6121 -7.1145 6.4143 20 6 4.2407 -9.1731 6.8393 21 7 3.6413 -10.2762 6.4475 22 14 5.2575 -9.1685 8.4063 23 1 5.8243 -7.8134 8.6247 24 1 4.3941 -9.5348 9.5577 25 1 6.3619 -10.1535 8.2827 26 6 2.4327 -5.7124 4.4975 27 8 1.4908 -5.7658 5.2589 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 3.8689 -1.8029 3.0912 38 1 2.4114 -1.3121 3.9956 39 1 4.1833 -3.2961 4.8509 40 1 2.4598 -3.2232 5.3398 41 1 0.7762 -4.1539 3.1968 42 1 1.7557 -4.6659 1.7894 43 1 4.5721 -4.5067 2.2967 44 1 2.2706 -8.2953 5.0633 45 1 3.7155 -8.7484 4.1279 46 1 3.7263 -11.0871 6.9729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378196233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:13 Heat of formation + Delta-G solvation = -112.383242 kcal Electronic energy + Delta-G solvation = -30703.743214 eV Core-core repulsion = 26401.960126 eV Total energy + Delta-G solvation = -4301.783089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.28440 -40.92950 -38.71233 -37.96376 -36.78440 -35.36201 -34.54061 -34.00855 -32.47166 -30.87794 -29.21360 -27.90198 -27.73297 -27.67535 -25.04024 -23.56944 -23.00796 -21.98811 -20.95840 -20.10516 -19.67879 -18.29861 -17.58744 -16.89355 -16.83548 -16.74495 -15.79557 -15.73161 -15.60220 -15.30389 -15.05927 -14.74066 -14.36325 -14.25019 -14.00478 -13.76390 -13.61414 -13.45001 -13.33497 -12.82340 -12.55897 -12.45178 -12.26203 -12.21570 -12.12736 -12.01994 -11.81129 -11.63867 -11.59053 -11.56524 -11.17210 -10.81955 -10.65578 -10.52871 -10.29129 -10.10524 -9.97392 -9.70709 -9.43317 -8.96385 -8.66559 -8.56159 -6.18487 -4.24076 1.69799 2.00789 2.58789 2.80723 3.25827 3.32286 3.35374 3.40084 3.56634 3.62805 3.97197 4.25462 4.33275 4.38914 4.39350 4.44008 4.57933 4.70467 4.84069 5.13721 5.14064 5.17914 5.21803 5.24976 5.36496 5.38768 5.41413 5.45206 5.54503 5.58307 5.62157 5.65960 5.77033 5.84283 5.99062 6.03591 6.18285 6.46973 6.95254 7.04423 7.15136 7.15728 7.73571 7.82604 7.91410 7.97202 8.06705 8.62057 8.79098 9.41106 10.90942 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027886 B = 0.002535 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.834215 B =11043.783206 C =11140.057349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.671 3.329 7 O -0.563 6.563 8 N -0.604 5.604 9 C 0.108 3.892 10 C -0.124 4.124 11 C 0.099 3.901 12 C 0.137 3.863 13 N -0.724 5.724 14 C 0.701 3.299 15 O -0.531 6.531 16 N -0.555 5.555 17 C 0.248 3.752 18 C -0.535 4.535 19 H 0.061 0.939 20 C 0.065 3.935 21 N -0.890 5.890 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.541 3.459 27 O -0.460 6.460 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.433 0.567 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.743 23.631 -11.215 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.426 3.574 7 O -0.452 6.452 8 N -0.346 5.346 9 C -0.015 4.015 10 C -0.163 4.163 11 C 0.006 3.994 12 C 0.014 3.986 13 N -0.389 5.389 14 C 0.403 3.597 15 O -0.404 6.404 16 N -0.299 5.299 17 C 0.131 3.869 18 C -0.574 4.574 19 H 0.079 0.921 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.733 3.267 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.207 1.207 26 C 0.325 3.675 27 O -0.330 6.330 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.277 0.723 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.053 22.813 -11.290 25.775 hybrid contribution 0.826 0.210 0.545 1.011 sum -3.227 23.023 -10.745 25.611 Atomic orbital electron populations 1.22521 0.93924 1.05163 1.02498 1.22098 0.94440 0.91500 0.82075 1.21856 1.02276 0.92453 1.03130 1.22523 1.01609 1.03564 0.96419 1.86310 1.71462 1.23275 1.46437 1.17393 0.78709 0.80470 0.80821 1.90929 1.41169 1.70429 1.42674 1.47144 1.53629 1.12232 1.21562 1.22151 0.95091 0.96821 0.87430 1.22855 1.05320 0.90380 0.97746 1.21399 0.88261 0.96090 0.93688 1.22157 0.97177 0.79629 0.99600 1.45312 1.31157 1.14019 1.48430 1.16152 0.82312 0.81891 0.79393 1.90974 1.32346 1.57170 1.59880 1.47026 1.26043 1.17614 1.39187 1.19666 0.99615 0.73791 0.93844 1.21264 1.31812 0.97083 1.07195 0.92090 1.24906 0.95626 0.95008 0.98247 1.69931 1.42817 1.00843 1.39157 0.86324 0.79804 0.78233 0.82388 1.19692 1.20700 1.20692 1.19707 0.82444 0.83735 0.81636 1.90770 1.27006 1.80947 1.34276 0.92137 0.91117 0.89326 0.91443 0.90116 0.91454 0.89330 0.91113 0.92123 0.90540 0.90136 0.87901 0.87674 0.88420 0.88412 0.72282 0.92795 0.92651 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.37 37.16 0.31 -1.25 16 2 C 0.14 1.17 1.13 -90.62 -0.10 1.07 16 3 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 4 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 5 O -0.36 -3.80 9.49 -40.32 -0.38 -4.18 16 6 C 0.67 8.15 7.93 54.05 0.43 8.58 16 7 O -0.56 -8.04 12.16 -19.28 -0.23 -8.28 16 8 N -0.60 -6.57 3.34 -176.73 -0.59 -7.16 16 9 C 0.11 0.91 6.91 -2.86 -0.02 0.89 16 10 C -0.12 -1.23 6.19 -25.37 -0.16 -1.39 16 11 C 0.10 1.31 1.14 -132.85 -0.15 1.15 16 12 C 0.14 1.65 6.12 -3.15 -0.02 1.63 16 13 N -0.72 -10.03 6.05 -53.59 -0.32 -10.35 16 14 C 0.70 13.72 8.64 -87.36 -0.75 12.96 16 15 O -0.53 -12.38 17.50 5.33 0.09 -12.29 16 16 N -0.55 -11.74 2.61 -122.24 -0.32 -12.06 16 17 C 0.25 6.37 5.47 -5.19 -0.03 6.34 16 18 C -0.54 -14.87 9.39 -34.44 -0.32 -15.19 16 19 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 21 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 22 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.54 9.86 7.04 -11.03 -0.08 9.78 16 27 O -0.46 -9.40 17.80 5.60 0.10 -9.30 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.10 1.04 8.06 -51.93 -0.42 0.62 16 41 H 0.10 1.17 8.05 -51.93 -0.42 0.76 16 42 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 43 H 0.43 4.86 8.96 -40.82 -0.37 4.50 16 44 H 0.05 1.44 8.03 -51.93 -0.42 1.03 16 45 H 0.06 1.52 7.87 -51.93 -0.41 1.11 16 46 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -33.56 382.45 -7.36 -40.92 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.83 Total: 1.03 kcal Atomic # 6 Polarization: 24.87 SS G_CDS: -0.35 Total: 24.52 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.50 Total: -54.59 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.42 Total: -34.04 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.56 -7.36 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378196233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.462 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds