Wall clock time and date at job start Tue Mar 31 2020 22:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47187 * 2 1 4 4 C 1.53002 * 109.46970 * 239.99897 * 2 1 3 5 5 O 1.45203 * 109.47042 * 120.00026 * 2 1 3 6 6 C 1.34638 * 116.99992 * 59.99471 * 5 2 1 7 7 O 1.21516 * 120.00287 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00238 * 179.97438 * 6 5 2 9 9 C 1.47140 * 125.60713 * 0.03522 * 8 6 5 10 10 C 1.54586 * 107.32430 * 180.91456 * 9 8 6 11 11 C 1.54006 * 102.81538 * 20.90017 * 10 9 8 12 12 C 1.47701 * 125.61307 * 180.02562 * 8 6 5 13 13 N 1.45800 * 112.20180 * 87.23584 * 11 10 9 14 14 C 1.35020 * 105.93297 * 122.11031 * 13 11 10 15 15 O 1.21538 * 123.82382 * 180.02562 * 14 13 11 16 16 N 1.34038 * 112.35727 * 359.97438 * 14 13 11 17 17 C 1.46503 * 124.22395 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.47020 * 89.97574 * 17 16 14 19 19 H 1.07997 * 119.99804 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00180 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99615 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99924 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47392 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46822 * 120.00201 * 22 20 18 25 25 H 1.48501 * 109.47194 * 240.00052 * 22 20 18 26 26 C 1.35252 * 111.54812 * 0.02562 * 16 14 13 27 27 O 1.21235 * 127.49743 * 180.02562 * 26 16 14 28 28 H 1.08998 * 109.47491 * 299.99827 * 1 2 3 29 29 H 1.08998 * 109.47478 * 59.99904 * 1 2 3 30 30 H 1.09005 * 109.47533 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46801 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47168 * 299.99874 * 3 2 1 33 33 H 1.08998 * 109.46764 * 59.99727 * 3 2 1 34 34 H 1.08995 * 109.47181 * 299.99854 * 4 2 1 35 35 H 1.08999 * 109.47194 * 60.00242 * 4 2 1 36 36 H 1.09003 * 109.46956 * 180.02562 * 4 2 1 37 37 H 1.08995 * 109.87385 * 300.35305 * 9 8 6 38 38 H 1.08996 * 109.87199 * 61.33882 * 9 8 6 39 39 H 1.08997 * 110.74504 * 139.22529 * 10 9 8 40 40 H 1.09000 * 110.74763 * 262.38536 * 10 9 8 41 41 H 1.09002 * 110.39179 * 276.20964 * 12 8 6 42 42 H 1.09000 * 110.38708 * 38.47928 * 12 8 6 43 43 H 0.97002 * 127.03433 * 302.12693 * 13 11 10 44 44 H 1.08994 * 109.47133 * 209.97568 * 17 16 14 45 45 H 1.09004 * 109.47428 * 329.97598 * 17 16 14 46 46 H 0.97001 * 119.99617 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9514 -2.5097 0.5037 8 7 2.0679 -2.6658 2.4167 9 6 2.9159 -2.1404 3.4983 10 6 3.1513 -3.2939 4.5002 11 6 2.8606 -4.5468 3.6531 12 6 1.7471 -4.0779 2.7072 13 7 4.0403 -5.0105 2.9326 14 6 4.2413 -6.2846 3.3317 15 8 5.1489 -6.9849 2.9280 16 7 3.3272 -6.6895 4.2245 17 6 3.2997 -8.0240 4.8283 18 6 4.1195 -8.0202 6.0928 19 1 4.6121 -7.1145 6.4143 20 6 4.2407 -9.1731 6.8393 21 7 3.6413 -10.2762 6.4475 22 14 5.2575 -9.1685 8.4063 23 1 5.8243 -7.8134 8.6247 24 1 4.3941 -9.5348 9.5577 25 1 6.3619 -10.1535 8.2827 26 6 2.4327 -5.7124 4.4975 27 8 1.4908 -5.7658 5.2589 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 3.8689 -1.8029 3.0912 38 1 2.4114 -1.3121 3.9956 39 1 4.1833 -3.2961 4.8509 40 1 2.4598 -3.2232 5.3398 41 1 0.7762 -4.1539 3.1968 42 1 1.7557 -4.6659 1.7894 43 1 4.5721 -4.5067 2.2967 44 1 2.2706 -8.2953 5.0633 45 1 3.7155 -8.7484 4.1279 46 1 3.7263 -11.0871 6.9729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378196233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:12 Heat of formation + Delta-G solvation = -136.569866 kcal Electronic energy + Delta-G solvation = -30704.792025 eV Core-core repulsion = 26401.960126 eV Total energy + Delta-G solvation = -4302.831899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.70396 -41.81950 -39.90966 -39.38329 -37.76562 -36.92677 -35.96361 -34.99508 -34.31671 -31.86989 -30.26589 -29.82564 -28.33144 -28.25048 -26.36126 -25.30409 -24.30831 -22.82182 -22.24871 -21.58119 -20.49748 -19.24658 -19.05897 -18.83454 -17.76351 -17.62119 -17.28914 -17.25061 -16.85856 -16.80168 -16.13815 -15.93567 -15.60503 -15.30103 -15.19724 -15.03900 -14.72391 -14.63107 -14.39330 -14.14039 -13.70141 -13.33256 -13.29796 -13.12090 -13.06696 -13.01714 -12.84685 -12.83163 -12.71104 -12.62745 -12.42638 -12.34908 -12.27485 -11.95580 -11.80788 -11.37685 -11.28533 -11.12893 -10.77349 -10.70375 -10.48842 -9.88772 -8.31993 -6.46616 0.46301 0.87929 1.30324 1.39710 1.40395 1.53384 1.68660 1.99594 2.11567 2.36960 2.71544 2.83014 3.01329 3.17304 3.26860 3.75894 3.80364 3.83142 3.98053 4.10331 4.13607 4.31584 4.43911 4.51718 4.62200 4.65016 4.65152 4.70513 4.80603 4.82062 4.88366 4.89657 4.92243 4.97344 5.00768 5.06661 5.18612 5.31745 5.36685 5.44723 5.57976 5.76545 5.84198 6.21205 6.27670 6.37365 6.59190 7.09897 7.17812 7.25315 8.78127 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027886 B = 0.002535 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.834215 B =11043.783206 C =11140.057349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.134 4.134 4 C -0.181 4.181 5 O -0.357 6.357 6 C 0.668 3.332 7 O -0.590 6.590 8 N -0.602 5.602 9 C 0.112 3.888 10 C -0.116 4.116 11 C 0.112 3.888 12 C 0.144 3.856 13 N -0.691 5.691 14 C 0.700 3.300 15 O -0.575 6.575 16 N -0.571 5.571 17 C 0.262 3.738 18 C -0.553 4.553 19 H 0.059 0.941 20 C 0.013 3.987 21 N -0.923 5.923 22 Si 0.975 3.025 23 H -0.264 1.264 24 H -0.272 1.272 25 H -0.275 1.275 26 C 0.537 3.463 27 O -0.485 6.485 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.451 0.549 44 H 0.033 0.967 45 H 0.027 0.973 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 27.049 -10.859 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.272 6.272 6 C 0.424 3.576 7 O -0.480 6.480 8 N -0.344 5.344 9 C -0.009 4.009 10 C -0.155 4.155 11 C 0.019 3.981 12 C 0.021 3.979 13 N -0.358 5.358 14 C 0.402 3.598 15 O -0.451 6.451 16 N -0.315 5.315 17 C 0.143 3.857 18 C -0.591 4.591 19 H 0.077 0.923 20 C -0.188 4.188 21 N -0.561 5.561 22 Si 0.798 3.202 23 H -0.188 1.188 24 H -0.197 1.197 25 H -0.201 1.201 26 C 0.324 3.676 27 O -0.356 6.356 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.298 0.702 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.235 26.329 -10.958 28.701 hybrid contribution 0.480 -0.826 0.365 1.023 sum -2.754 25.502 -10.593 27.752 Atomic orbital electron populations 1.22481 0.94059 1.03567 1.03682 1.22449 0.94547 0.92766 0.81357 1.21874 1.02516 0.90352 1.04373 1.22482 1.01735 1.02102 0.97478 1.86323 1.71313 1.22189 1.47354 1.17512 0.78462 0.80968 0.80631 1.90932 1.42319 1.71098 1.43699 1.47095 1.53830 1.11508 1.21938 1.22316 0.95934 0.96347 0.86332 1.22946 1.06403 0.88385 0.97752 1.21325 0.88058 0.95071 0.93653 1.21965 0.96519 0.80613 0.98817 1.45057 1.31049 1.11784 1.47877 1.16205 0.81472 0.83154 0.78985 1.90940 1.34042 1.58746 1.61353 1.46922 1.27616 1.16988 1.39936 1.19086 0.97784 0.75851 0.92964 1.21527 1.32244 0.97284 1.08050 0.92293 1.25868 0.96669 0.94510 1.01726 1.70040 1.43915 1.01531 1.40637 0.85257 0.78214 0.78622 0.78090 1.18800 1.19686 1.20050 1.20384 0.81345 0.84331 0.81565 1.90749 1.27765 1.81570 1.35534 0.91770 0.89145 0.92210 0.91056 0.88090 0.91012 0.92225 0.89168 0.91810 0.88423 0.88025 0.86496 0.87138 0.88245 0.89179 0.70181 0.94850 0.95519 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.37 71.98 0.60 -2.19 16 2 C 0.12 1.88 1.13 -10.79 -0.01 1.87 16 3 C -0.13 -1.15 8.85 71.98 0.64 -0.51 16 4 C -0.18 -2.83 8.37 71.98 0.60 -2.22 16 5 O -0.36 -6.72 9.49 -55.48 -0.53 -7.24 16 6 C 0.67 15.23 7.93 129.79 1.03 16.25 16 7 O -0.59 -16.70 12.16 19.79 0.24 -16.46 16 8 N -0.60 -11.78 3.34 -943.46 -3.15 -14.94 16 9 C 0.11 1.48 6.91 86.80 0.60 2.08 16 10 C -0.12 -1.97 6.19 31.47 0.19 -1.78 16 11 C 0.11 2.79 1.14 3.31 0.00 2.80 16 12 C 0.14 3.30 6.12 86.30 0.53 3.83 16 13 N -0.69 -18.36 6.05 -441.60 -2.67 -21.03 16 14 C 0.70 27.80 8.64 179.21 1.55 29.35 16 15 O -0.58 -27.54 17.50 -3.83 -0.07 -27.61 16 16 N -0.57 -24.90 2.61 -777.48 -2.03 -26.93 16 17 C 0.26 14.17 5.47 85.63 0.47 14.64 16 18 C -0.55 -31.50 9.39 25.60 0.24 -31.26 16 19 H 0.06 3.30 7.81 -2.91 -0.02 3.27 16 20 C 0.01 0.71 5.46 84.65 0.46 1.17 16 21 N -0.92 -54.72 13.29 21.45 0.28 -54.44 16 22 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 26 C 0.54 19.73 7.04 87.41 0.62 20.34 16 27 O -0.49 -20.10 17.80 -2.89 -0.05 -20.16 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.30 5.88 -2.38 -0.01 1.29 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 1.31 5.88 -2.39 -0.01 1.30 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.11 1.87 8.06 -2.39 -0.02 1.85 16 41 H 0.10 2.31 8.05 -2.39 -0.02 2.29 16 42 H 0.09 2.24 8.07 -2.39 -0.02 2.22 16 43 H 0.45 9.16 8.96 -92.71 -0.83 8.33 16 44 H 0.03 1.90 8.03 -2.39 -0.02 1.89 16 45 H 0.03 1.57 7.87 -2.38 -0.02 1.55 16 46 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -76.13 382.45 1.76 -74.37 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.18 Total: 14.06 kcal Atomic # 6 Polarization: 46.86 SS G_CDS: 7.52 Total: 54.38 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -7.56 Total: -117.33 kcal Atomic # 8 Polarization: -71.06 SS G_CDS: -0.40 Total: -71.46 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -76.13 1.76 -74.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378196233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.201 kcal (2) G-P(sol) polarization free energy of solvation -76.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds