Wall clock time and date at job start Tue Mar 31 2020 22:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47469 * 2 1 4 4 C 1.53001 * 109.46936 * 239.99792 * 2 1 3 5 5 O 1.45198 * 109.46663 * 120.00019 * 2 1 3 6 6 C 1.34637 * 117.00161 * 59.99709 * 5 2 1 7 7 O 1.21509 * 120.00389 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00062 * 179.97438 * 6 5 2 9 9 C 1.47136 * 125.60845 * 0.03042 * 8 6 5 10 10 C 1.54584 * 107.32715 * 179.02519 * 9 8 6 11 11 C 1.53720 * 102.78273 * 339.09685 * 10 9 8 12 12 C 1.47700 * 125.60946 * 179.97438 * 8 6 5 13 13 N 1.45800 * 112.17608 * 272.70161 * 11 10 9 14 14 C 1.35026 * 105.92824 * 238.07881 * 13 11 10 15 15 O 1.21535 * 123.81691 * 179.97438 * 14 13 11 16 16 N 1.34029 * 112.36598 * 359.97438 * 14 13 11 17 17 C 1.46491 * 124.23035 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46957 * 90.02456 * 17 16 14 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 C 1.35259 * 111.54479 * 0.26288 * 16 14 13 27 27 O 1.21232 * 127.50255 * 179.74006 * 26 16 14 28 28 H 1.08999 * 109.47329 * 300.00359 * 1 2 3 29 29 H 1.09007 * 109.46815 * 60.00091 * 1 2 3 30 30 H 1.08993 * 109.47684 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47550 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47028 * 299.99779 * 3 2 1 33 33 H 1.08999 * 109.47139 * 59.99524 * 3 2 1 34 34 H 1.09005 * 109.46939 * 300.00242 * 4 2 1 35 35 H 1.08997 * 109.47221 * 60.00460 * 4 2 1 36 36 H 1.09004 * 109.47046 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.87156 * 59.59261 * 9 8 6 38 38 H 1.08996 * 109.99545 * 298.52547 * 9 8 6 39 39 H 1.08997 * 110.74656 * 220.77618 * 10 9 8 40 40 H 1.09001 * 110.90596 * 97.49255 * 10 9 8 41 41 H 1.09000 * 110.38425 * 83.85713 * 12 8 6 42 42 H 1.08996 * 110.39445 * 321.47297 * 12 8 6 43 43 H 0.96998 * 127.03387 * 58.07477 * 13 11 10 44 44 H 1.09004 * 109.47166 * 330.02722 * 17 16 14 45 45 H 1.08994 * 109.47507 * 210.02428 * 17 16 14 46 46 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6520 -1.9723 1.3384 7 8 0.9514 -2.5097 0.5036 8 7 2.0678 -2.6657 2.4168 9 6 2.9158 -2.1404 3.4983 10 6 3.1114 -3.2798 4.5246 11 6 1.9279 -4.2139 4.2254 12 6 1.7461 -4.0776 2.7078 13 7 0.7284 -3.8362 4.9633 14 6 0.3890 -4.9176 5.6973 15 8 -0.5722 -4.9563 6.4400 16 7 1.2319 -5.9434 5.5140 17 6 1.1078 -7.2413 6.1818 18 6 0.2580 -8.1593 5.3415 19 1 -0.1486 -7.8109 4.4035 20 6 0.0048 -9.4462 5.7671 21 7 -0.7323 -10.2491 5.0311 22 14 0.7085 -10.0490 7.3890 23 1 -0.2540 -9.7629 8.4831 24 1 0.9485 -11.5125 7.3110 25 1 1.9904 -9.3510 7.6623 26 6 2.2151 -5.6284 4.6402 27 8 3.1284 -6.3348 4.2707 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6765 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 2.4247 -1.2923 3.9754 38 1 3.8817 -1.8322 3.0983 39 1 3.0527 -2.8962 5.5432 40 1 4.0592 -3.7925 4.3606 41 1 2.4338 -4.7398 2.1820 42 1 0.7162 -4.2981 2.4273 43 1 0.2685 -2.9828 4.9331 44 1 0.6404 -7.1049 7.1571 45 1 2.0974 -7.6794 6.3113 46 1 -0.9108 -11.1542 5.3307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378196234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:16 Heat of formation + Delta-G solvation = -106.651941 kcal Electronic energy + Delta-G solvation = -30805.294567 eV Core-core repulsion = 26503.760007 eV Total energy + Delta-G solvation = -4301.534561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.37449 -40.91550 -38.75478 -38.04868 -36.78592 -35.43776 -34.58121 -34.02434 -32.44521 -30.94047 -29.22477 -28.56200 -27.71248 -27.64378 -25.07097 -23.40818 -23.01749 -21.97854 -20.95396 -20.07950 -19.66911 -18.29517 -17.65553 -17.23507 -16.82651 -16.73602 -15.95556 -15.79816 -15.67163 -15.29153 -15.09810 -14.74151 -14.34174 -14.22516 -14.01642 -13.80698 -13.75073 -13.46598 -13.33861 -12.80647 -12.54407 -12.47894 -12.27908 -12.19688 -12.17132 -12.08167 -12.04629 -11.83113 -11.64239 -11.55399 -11.36200 -10.72656 -10.62958 -10.50385 -10.30067 -10.25549 -9.81932 -9.69042 -9.48439 -8.96615 -8.76734 -8.68831 -6.18401 -4.20871 1.68599 1.95470 2.60880 2.70345 3.24053 3.29005 3.30674 3.33607 3.51865 3.58501 3.90899 4.21594 4.28905 4.30697 4.41680 4.46133 4.60409 4.66000 4.79346 5.12084 5.14750 5.16306 5.24187 5.25161 5.36407 5.39068 5.41839 5.46803 5.54007 5.57540 5.58331 5.66649 5.71016 5.80914 6.02704 6.07167 6.20741 6.25989 6.59169 6.64736 6.98129 7.16854 7.37360 7.63947 7.78962 8.09717 8.29073 8.57843 8.81199 9.37351 10.94381 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.002722 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.859984 B =10282.569145 C =10512.288560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.361 6.361 6 C 0.670 3.330 7 O -0.560 6.560 8 N -0.604 5.604 9 C 0.108 3.892 10 C -0.125 4.125 11 C 0.100 3.900 12 C 0.137 3.863 13 N -0.721 5.721 14 C 0.703 3.297 15 O -0.530 6.530 16 N -0.551 5.551 17 C 0.220 3.780 18 C -0.541 4.541 19 H 0.078 0.922 20 C 0.079 3.921 21 N -0.888 5.888 22 Si 0.875 3.125 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.263 1.263 26 C 0.542 3.458 27 O -0.458 6.458 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.435 0.565 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.431 24.228 -6.880 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.276 6.276 6 C 0.425 3.575 7 O -0.448 6.448 8 N -0.346 5.346 9 C -0.015 4.015 10 C -0.164 4.164 11 C 0.007 3.993 12 C 0.014 3.986 13 N -0.387 5.387 14 C 0.404 3.596 15 O -0.402 6.402 16 N -0.295 5.295 17 C 0.102 3.898 18 C -0.579 4.579 19 H 0.096 0.904 20 C -0.125 4.125 21 N -0.525 5.525 22 Si 0.701 3.299 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.188 1.188 26 C 0.327 3.673 27 O -0.327 6.327 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.279 0.721 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.058 23.427 -7.004 26.076 hybrid contribution -0.049 -0.026 0.648 0.651 sum 9.010 23.401 -6.356 25.869 Atomic orbital electron populations 1.22526 0.93880 1.05242 1.02511 1.22096 0.94466 0.91462 0.82078 1.21852 1.02215 0.92472 1.03131 1.22526 1.01558 1.03636 0.96425 1.86298 1.71507 1.23284 1.46470 1.17394 0.78659 0.80410 0.80999 1.90945 1.40995 1.70439 1.42445 1.47134 1.53437 1.12292 1.21786 1.22116 0.95449 0.96620 0.87273 1.22827 0.97656 0.95199 1.00686 1.21339 0.88588 0.95421 0.93967 1.22168 1.04434 0.80584 0.91381 1.45282 1.29706 1.16303 1.47413 1.16085 0.82461 0.80277 0.80729 1.90979 1.27518 1.81918 1.39828 1.46648 1.25271 1.15818 1.41777 1.19987 0.99184 0.76812 0.93863 1.21109 1.32175 0.96676 1.07906 0.90408 1.24786 0.94392 0.96139 0.97181 1.69874 1.37356 1.07416 1.37887 0.86863 0.80174 0.78703 0.84128 1.19624 1.20630 1.18789 1.19722 0.82051 0.86784 0.78771 1.90776 1.30483 1.56392 1.55070 0.92132 0.91102 0.89276 0.91478 0.90114 0.91475 0.89279 0.91102 0.92148 0.90542 0.90137 0.88006 0.87677 0.88279 0.88107 0.72105 0.93348 0.93089 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 2 C 0.14 1.21 1.13 -90.62 -0.10 1.11 16 3 C -0.14 -0.85 8.85 37.15 0.33 -0.52 16 4 C -0.18 -1.65 8.37 37.16 0.31 -1.34 16 5 O -0.36 -3.87 9.49 -40.32 -0.38 -4.26 16 6 C 0.67 8.44 7.93 54.06 0.43 8.86 16 7 O -0.56 -8.46 12.16 -19.28 -0.23 -8.70 16 8 N -0.60 -6.72 3.34 -176.73 -0.59 -7.31 16 9 C 0.11 0.86 6.91 -2.86 -0.02 0.84 16 10 C -0.12 -1.09 6.17 -25.52 -0.16 -1.25 16 11 C 0.10 1.29 1.13 -132.99 -0.15 1.14 16 12 C 0.14 1.75 6.14 -3.15 -0.02 1.73 16 13 N -0.72 -9.75 6.05 -53.72 -0.32 -10.08 16 14 C 0.70 13.41 8.64 -87.36 -0.75 12.65 16 15 O -0.53 -12.03 17.49 5.34 0.09 -11.93 16 16 N -0.55 -11.31 2.61 -122.24 -0.32 -11.63 16 17 C 0.22 5.28 4.54 -5.20 -0.02 5.26 16 18 C -0.54 -15.39 9.94 -34.44 -0.34 -15.73 16 19 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 20 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 21 N -0.89 -27.05 13.96 55.43 0.77 -26.28 16 22 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 26 C 0.54 9.64 7.03 -11.02 -0.08 9.56 16 27 O -0.46 -9.09 17.79 5.60 0.10 -8.99 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.05 5.88 -51.93 -0.31 0.75 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 41 H 0.10 1.29 8.06 -51.93 -0.42 0.87 16 42 H 0.10 1.45 8.07 -51.93 -0.42 1.03 16 43 H 0.43 4.74 8.96 -40.82 -0.37 4.38 16 44 H 0.05 1.16 7.30 -51.93 -0.38 0.78 16 45 H 0.05 1.20 7.07 -51.93 -0.37 0.83 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -35.01 378.79 -7.01 -42.01 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.80 Total: 2.06 kcal Atomic # 6 Polarization: 23.50 SS G_CDS: -0.37 Total: 23.14 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.46 Total: -55.30 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.42 Total: -33.88 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.01 -7.01 -42.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378196234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.637 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds