Wall clock time and date at job start Tue Mar 31 2020 22:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47469 * 2 1 4 4 C 1.53001 * 109.46936 * 239.99792 * 2 1 3 5 5 O 1.45198 * 109.46663 * 120.00019 * 2 1 3 6 6 C 1.34637 * 117.00161 * 59.99709 * 5 2 1 7 7 O 1.21509 * 120.00389 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00062 * 179.97438 * 6 5 2 9 9 C 1.47136 * 125.60845 * 0.03042 * 8 6 5 10 10 C 1.54584 * 107.32715 * 179.02519 * 9 8 6 11 11 C 1.53720 * 102.78273 * 339.09685 * 10 9 8 12 12 C 1.47700 * 125.60946 * 179.97438 * 8 6 5 13 13 N 1.45800 * 112.17608 * 272.70161 * 11 10 9 14 14 C 1.35026 * 105.92824 * 238.07881 * 13 11 10 15 15 O 1.21535 * 123.81691 * 179.97438 * 14 13 11 16 16 N 1.34029 * 112.36598 * 359.97438 * 14 13 11 17 17 C 1.46491 * 124.23035 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46957 * 90.02456 * 17 16 14 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 C 1.35259 * 111.54479 * 0.26288 * 16 14 13 27 27 O 1.21232 * 127.50255 * 179.74006 * 26 16 14 28 28 H 1.08999 * 109.47329 * 300.00359 * 1 2 3 29 29 H 1.09007 * 109.46815 * 60.00091 * 1 2 3 30 30 H 1.08993 * 109.47684 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47550 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47028 * 299.99779 * 3 2 1 33 33 H 1.08999 * 109.47139 * 59.99524 * 3 2 1 34 34 H 1.09005 * 109.46939 * 300.00242 * 4 2 1 35 35 H 1.08997 * 109.47221 * 60.00460 * 4 2 1 36 36 H 1.09004 * 109.47046 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.87156 * 59.59261 * 9 8 6 38 38 H 1.08996 * 109.99545 * 298.52547 * 9 8 6 39 39 H 1.08997 * 110.74656 * 220.77618 * 10 9 8 40 40 H 1.09001 * 110.90596 * 97.49255 * 10 9 8 41 41 H 1.09000 * 110.38425 * 83.85713 * 12 8 6 42 42 H 1.08996 * 110.39445 * 321.47297 * 12 8 6 43 43 H 0.96998 * 127.03387 * 58.07477 * 13 11 10 44 44 H 1.09004 * 109.47166 * 330.02722 * 17 16 14 45 45 H 1.08994 * 109.47507 * 210.02428 * 17 16 14 46 46 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6520 -1.9723 1.3384 7 8 0.9514 -2.5097 0.5036 8 7 2.0678 -2.6657 2.4168 9 6 2.9158 -2.1404 3.4983 10 6 3.1114 -3.2798 4.5246 11 6 1.9279 -4.2139 4.2254 12 6 1.7461 -4.0776 2.7078 13 7 0.7284 -3.8362 4.9633 14 6 0.3890 -4.9176 5.6973 15 8 -0.5722 -4.9563 6.4400 16 7 1.2319 -5.9434 5.5140 17 6 1.1078 -7.2413 6.1818 18 6 0.2580 -8.1593 5.3415 19 1 -0.1486 -7.8109 4.4035 20 6 0.0048 -9.4462 5.7671 21 7 -0.7323 -10.2491 5.0311 22 14 0.7085 -10.0490 7.3890 23 1 -0.2540 -9.7629 8.4831 24 1 0.9485 -11.5125 7.3110 25 1 1.9904 -9.3510 7.6623 26 6 2.2151 -5.6284 4.6402 27 8 3.1284 -6.3348 4.2707 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6765 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 2.4247 -1.2923 3.9754 38 1 3.8817 -1.8322 3.0983 39 1 3.0527 -2.8962 5.5432 40 1 4.0592 -3.7925 4.3606 41 1 2.4338 -4.7398 2.1820 42 1 0.7162 -4.2981 2.4273 43 1 0.2685 -2.9828 4.9331 44 1 0.6404 -7.1049 7.1571 45 1 2.0974 -7.6794 6.3113 46 1 -0.9108 -11.1542 5.3307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378196234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:16 Heat of formation + Delta-G solvation = -133.346655 kcal Electronic energy + Delta-G solvation = -30806.452137 eV Core-core repulsion = 26503.760007 eV Total energy + Delta-G solvation = -4302.692130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.74848 -41.83873 -39.94269 -39.41834 -37.79252 -36.96194 -35.97704 -34.99805 -34.38580 -31.90028 -30.54694 -30.17385 -28.34977 -28.25902 -26.32400 -25.07495 -24.33820 -22.80878 -22.21851 -21.56189 -20.51381 -19.35838 -19.25347 -18.99192 -17.78254 -17.66552 -17.40991 -17.25398 -16.88352 -16.75818 -16.15610 -15.89566 -15.61926 -15.35631 -15.26870 -15.04954 -14.72112 -14.64248 -14.55997 -14.16074 -13.96712 -13.48213 -13.32959 -13.15932 -13.10006 -13.06012 -12.86015 -12.84268 -12.61875 -12.58425 -12.40086 -12.29921 -12.28702 -11.91279 -11.80270 -11.39330 -11.32211 -11.14987 -10.88252 -10.79590 -10.51528 -9.90214 -8.39931 -6.49784 0.42305 0.86260 1.23362 1.35926 1.38216 1.47270 1.67168 1.97797 2.08255 2.28139 2.69066 2.82225 2.93812 3.15182 3.24387 3.75537 3.80684 3.81672 3.96714 4.07775 4.12116 4.28766 4.40581 4.49048 4.51413 4.63097 4.63362 4.69141 4.70442 4.79010 4.81682 4.84246 4.86849 4.91372 4.95028 5.01935 5.17823 5.26066 5.30233 5.35590 5.43619 5.74205 6.03433 6.13189 6.26571 6.35769 6.50486 7.05468 7.16337 7.16668 8.76874 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.002722 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.859984 B =10282.569145 C =10512.288560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.125 3.875 3 C -0.133 4.133 4 C -0.181 4.181 5 O -0.355 6.355 6 C 0.667 3.333 7 O -0.593 6.593 8 N -0.602 5.602 9 C 0.109 3.891 10 C -0.112 4.112 11 C 0.112 3.888 12 C 0.141 3.859 13 N -0.691 5.691 14 C 0.701 3.299 15 O -0.572 6.572 16 N -0.568 5.568 17 C 0.228 3.772 18 C -0.553 4.553 19 H 0.028 0.972 20 C 0.017 3.983 21 N -0.939 5.939 22 Si 0.949 3.051 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.237 1.237 26 C 0.538 3.462 27 O -0.481 6.481 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.451 0.549 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.725 27.184 -5.760 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.089 3.911 3 C -0.190 4.190 4 C -0.239 4.239 5 O -0.269 6.269 6 C 0.423 3.577 7 O -0.483 6.483 8 N -0.343 5.343 9 C -0.012 4.012 10 C -0.150 4.150 11 C 0.019 3.981 12 C 0.017 3.983 13 N -0.358 5.358 14 C 0.403 3.597 15 O -0.448 6.448 16 N -0.312 5.312 17 C 0.108 3.892 18 C -0.592 4.592 19 H 0.046 0.954 20 C -0.183 4.183 21 N -0.577 5.577 22 Si 0.770 3.230 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.160 1.160 26 C 0.325 3.675 27 O -0.352 6.352 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.299 0.701 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.395 26.482 -5.915 29.430 hybrid contribution -0.805 -0.909 0.123 1.220 sum 10.589 25.573 -5.792 28.278 Atomic orbital electron populations 1.22489 0.94263 1.03418 1.03722 1.22450 0.94397 0.92881 0.81373 1.21868 1.02592 0.90118 1.04409 1.22488 1.01819 1.02011 0.97545 1.86313 1.71281 1.22002 1.47326 1.17555 0.78356 0.80973 0.80865 1.90945 1.42419 1.71234 1.43729 1.47093 1.53581 1.11369 1.22297 1.22376 0.96253 0.96580 0.86030 1.22942 0.95483 0.94093 1.02501 1.21287 0.89892 0.93170 0.93741 1.21937 1.03182 0.82083 0.91052 1.45063 1.29666 1.15430 1.45608 1.16182 0.81729 0.80972 0.80859 1.90945 1.29140 1.82755 1.41948 1.46639 1.26615 1.15262 1.42655 1.19645 0.98472 0.77781 0.93335 1.21325 1.32898 0.98064 1.06869 0.95356 1.25864 0.94569 0.96136 1.01705 1.70034 1.39147 1.08107 1.40445 0.85699 0.80518 0.78395 0.78371 1.18648 1.19917 1.15988 1.20379 0.80971 0.88497 0.77666 1.90755 1.31287 1.57666 1.55478 0.91674 0.89160 0.92518 0.90868 0.88118 0.90929 0.92475 0.89138 0.91617 0.88240 0.87912 0.85438 0.86713 0.88639 0.90292 0.70134 0.92947 0.92111 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 8.37 71.98 0.60 -2.50 16 2 C 0.13 2.01 1.13 -10.80 -0.01 1.99 16 3 C -0.13 -1.18 8.85 71.98 0.64 -0.54 16 4 C -0.18 -3.05 8.37 71.98 0.60 -2.45 16 5 O -0.35 -6.93 9.49 -55.46 -0.53 -7.46 16 6 C 0.67 16.25 7.93 129.79 1.03 17.28 16 7 O -0.59 -18.42 12.16 19.81 0.24 -18.18 16 8 N -0.60 -12.40 3.34 -943.45 -3.15 -15.55 16 9 C 0.11 1.31 6.91 86.80 0.60 1.91 16 10 C -0.11 -1.55 6.17 31.38 0.19 -1.36 16 11 C 0.11 2.73 1.13 3.22 0.00 2.74 16 12 C 0.14 3.58 6.14 86.30 0.53 4.11 16 13 N -0.69 -17.89 6.05 -442.02 -2.67 -20.57 16 14 C 0.70 26.80 8.64 179.21 1.55 28.35 16 15 O -0.57 -26.33 17.49 -3.82 -0.07 -26.40 16 16 N -0.57 -23.51 2.61 -777.50 -2.03 -25.54 16 17 C 0.23 11.02 4.54 85.64 0.39 11.41 16 18 C -0.55 -32.77 9.94 25.60 0.25 -32.52 16 19 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 20 C 0.02 0.98 5.47 84.66 0.46 1.44 16 21 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 22 Si 0.95 43.14 27.47 68.60 1.88 45.03 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 26 C 0.54 19.01 7.03 87.42 0.61 19.63 16 27 O -0.48 -19.10 17.79 -2.88 -0.05 -19.15 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 1.36 5.88 -2.38 -0.01 1.34 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.51 8.05 -2.39 -0.02 1.49 16 41 H 0.10 2.53 8.06 -2.39 -0.02 2.51 16 42 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 43 H 0.45 8.96 8.96 -92.71 -0.83 8.13 16 44 H 0.05 2.49 7.30 -2.38 -0.02 2.47 16 45 H 0.06 2.81 7.07 -2.39 -0.02 2.79 16 46 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -81.83 378.79 1.51 -80.32 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.12 Total: 16.99 kcal Atomic # 6 Polarization: 42.03 SS G_CDS: 7.46 Total: 49.49 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -7.55 Total: -120.64 kcal Atomic # 8 Polarization: -70.78 SS G_CDS: -0.40 Total: -71.19 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.03 kcal Total: -81.83 1.51 -80.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378196234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.025 kcal (2) G-P(sol) polarization free energy of solvation -81.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds