Wall clock time and date at job start Wed Apr 1 2020 00:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47171 * 2 1 4 4 O 1.21317 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.46636 * 120.00224 * 179.97438 * 3 2 1 6 6 C 1.40107 * 120.19274 * 359.97438 * 5 3 2 7 7 C 1.37544 * 119.90429 * 180.02562 * 6 5 3 8 8 C 1.38948 * 120.31179 * 0.02562 * 7 6 5 9 9 F 1.35102 * 119.80099 * 179.97438 * 8 7 6 10 10 C 1.38361 * 120.39672 * 359.73992 * 8 7 6 11 11 C 1.38545 * 120.08645 * 0.51336 * 10 8 7 12 12 O 1.35607 * 120.15273 * 179.76997 * 11 10 8 13 13 C 1.42900 * 117.00028 * 359.71780 * 12 11 10 14 14 C 1.53002 * 109.46918 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.46823 * 55.00822 * 14 13 12 16 16 O 1.42899 * 109.47103 * 295.00344 * 14 13 12 17 17 C 1.53000 * 109.46726 * 175.00484 * 14 13 12 18 18 N 1.46904 * 109.46815 * 180.45976 * 17 14 13 19 19 C 1.46899 * 110.99898 * 199.84806 * 18 17 14 20 20 C 1.46907 * 110.99778 * 75.89878 * 18 17 14 21 21 C 1.50705 * 109.46801 * 190.00021 * 20 18 17 22 22 H 1.08000 * 120.00039 * 359.97438 * 21 20 18 23 23 C 1.37881 * 119.99700 * 179.97438 * 21 20 18 24 24 N 1.31512 * 120.00014 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99637 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46948 * 60.00476 * 25 23 21 27 27 H 1.48500 * 109.46796 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47264 * 299.99924 * 25 23 21 29 29 H 1.08997 * 109.47449 * 300.00397 * 1 2 3 30 30 H 1.09002 * 109.47400 * 60.00279 * 1 2 3 31 31 H 1.08998 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47035 * 239.99458 * 2 1 3 33 33 H 1.09004 * 109.46722 * 120.00032 * 2 1 3 34 34 H 1.07997 * 120.04535 * 0.04210 * 6 5 3 35 35 H 1.07999 * 119.84631 * 180.02562 * 7 6 5 36 36 H 1.08002 * 119.95701 * 180.26182 * 10 8 7 37 37 H 1.09001 * 109.46831 * 60.00595 * 13 12 11 38 38 H 1.08996 * 109.47545 * 300.00425 * 13 12 11 39 39 H 0.96698 * 114.00245 * 299.99745 * 16 14 13 40 40 H 1.09000 * 109.47349 * 300.45489 * 17 14 13 41 41 H 1.09001 * 109.47706 * 60.46216 * 17 14 13 42 42 H 1.08999 * 109.47104 * 64.82506 * 19 18 17 43 43 H 1.09004 * 109.47084 * 184.82138 * 19 18 17 44 44 H 1.09003 * 109.47573 * 304.82062 * 19 18 17 45 45 H 1.09002 * 109.46729 * 309.99402 * 20 18 17 46 46 H 1.08997 * 109.47420 * 69.99907 * 20 18 17 47 47 H 0.96996 * 119.99686 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2439 2.3429 -0.0005 5 6 3.4740 1.6887 0.0006 6 6 4.3880 0.6269 0.0017 7 6 5.7390 0.8851 0.0027 8 6 6.2027 2.1949 0.0033 9 9 7.5319 2.4367 0.0048 10 6 5.3113 3.2531 -0.0027 11 6 3.9470 3.0120 0.0015 12 8 3.0721 4.0481 0.0004 13 6 3.6264 5.3652 0.0011 14 6 2.4947 6.3948 0.0003 15 1 1.8287 6.2032 0.8416 16 8 1.7602 6.2943 -1.2213 17 6 3.0844 7.8009 0.1266 18 7 1.9972 8.7888 0.1369 19 6 2.4967 10.1251 -0.2135 20 6 1.3143 8.8064 1.4375 21 6 0.0639 9.6416 1.3370 22 1 -0.1972 10.1125 0.4008 23 6 -0.7469 9.8045 2.4403 24 7 -0.4292 9.2307 3.5802 25 14 -2.2964 10.8402 2.3159 26 1 -3.1992 10.2590 1.2900 27 1 -2.9874 10.8570 3.6302 28 1 -1.9348 12.2274 1.9284 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 4.0323 -0.3928 0.0014 35 1 6.4428 0.0659 0.0031 36 1 5.6795 4.2684 -0.0065 37 1 4.2420 5.5008 -0.8882 38 1 4.2399 5.5009 0.8917 39 1 2.2911 6.4534 -2.0137 40 1 3.6515 7.8751 1.0545 41 1 3.7442 7.9957 -0.7189 42 1 2.8576 10.1198 -1.2420 43 1 1.6901 10.8517 -0.1153 44 1 3.3128 10.3953 0.4566 45 1 1.0493 7.7883 1.7225 46 1 1.9770 9.2336 2.1901 47 1 -0.9998 9.3450 4.3562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414121460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:49 Heat of formation + Delta-G solvation = -139.952392 kcal Electronic energy + Delta-G solvation = -29392.729546 eV Core-core repulsion = 25069.831007 eV Total energy + Delta-G solvation = -4322.898538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.37104 -40.79035 -39.06225 -37.99278 -37.09790 -35.36410 -33.08425 -32.47696 -31.36314 -30.97127 -29.91043 -27.36767 -26.58914 -25.41256 -24.06419 -23.30119 -22.45278 -21.70584 -20.18515 -19.82242 -18.76371 -17.39929 -16.95109 -16.68562 -16.38508 -16.18848 -15.98998 -15.78395 -15.50305 -15.13125 -14.84081 -14.76457 -14.60973 -14.36707 -13.97932 -13.59225 -13.42784 -13.31047 -13.13804 -12.67466 -12.50232 -12.29510 -12.19875 -12.01823 -11.94434 -11.68368 -11.51008 -11.31733 -11.19344 -11.12523 -10.88387 -10.72018 -10.64077 -10.35270 -9.77892 -9.70757 -9.65288 -9.36163 -9.15959 -8.61875 -8.39406 -7.24931 -5.98973 -3.99635 0.26389 0.90134 2.20425 2.81533 3.30374 3.37346 3.41176 3.44917 3.68973 3.84927 4.22223 4.43724 4.51150 4.59927 4.63915 4.69357 4.78359 4.87801 4.92560 4.99208 5.02773 5.16021 5.34073 5.36574 5.39097 5.44949 5.51361 5.58339 5.60495 5.62711 5.71617 5.78228 5.86684 5.91877 6.09072 6.10141 6.23976 6.27695 6.37968 6.70775 7.07510 7.26940 7.30043 7.59449 7.80880 8.06639 8.10393 8.20152 8.55102 9.06773 9.64047 11.12219 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.002703 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.510521 B =10355.093501 C =12006.348219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.383 3.617 4 O -0.416 6.416 5 C -0.218 4.218 6 C -0.008 4.008 7 C -0.211 4.211 8 C 0.171 3.829 9 F -0.132 7.132 10 C -0.266 4.266 11 C 0.218 3.782 12 O -0.260 6.260 13 C 0.018 3.982 14 C 0.121 3.879 15 H 0.115 0.885 16 O -0.527 6.527 17 C 0.029 3.971 18 N -0.529 5.529 19 C 0.038 3.962 20 C 0.191 3.809 21 C -0.506 4.506 22 H 0.063 0.937 23 C 0.055 3.945 24 N -0.900 5.900 25 Si 0.899 3.101 26 H -0.275 1.275 27 H -0.288 1.288 28 H -0.278 1.278 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.361 0.639 40 H 0.036 0.964 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.008 0.992 45 H 0.032 0.968 46 H -0.010 1.010 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.509 -20.271 -8.451 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.204 4.204 3 C 0.258 3.742 4 O -0.288 6.288 5 C -0.220 4.220 6 C -0.026 4.026 7 C -0.230 4.230 8 C 0.151 3.849 9 F -0.110 7.110 10 C -0.286 4.286 11 C 0.169 3.831 12 O -0.169 6.169 13 C -0.058 4.058 14 C 0.060 3.940 15 H 0.133 0.867 16 O -0.330 6.330 17 C -0.100 4.100 18 N -0.254 5.254 19 C -0.110 4.110 20 C 0.066 3.934 21 C -0.544 4.544 22 H 0.081 0.919 23 C -0.146 4.146 24 N -0.539 5.539 25 Si 0.727 3.273 26 H -0.201 1.201 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.206 0.794 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.027 0.973 45 H 0.050 0.950 46 H 0.007 0.993 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.985 -20.007 -8.195 25.220 hybrid contribution 1.103 1.007 0.435 1.556 sum 14.087 -19.000 -7.760 24.893 Atomic orbital electron populations 1.21596 0.93486 1.01610 1.03567 1.21959 0.98588 0.95711 1.04105 1.22109 0.87119 0.91451 0.73483 1.90706 1.57508 1.47113 1.33515 1.20101 0.96560 0.90527 1.14819 1.21104 0.91297 0.98599 0.91587 1.20948 0.96819 0.95119 1.10146 1.17663 0.77087 0.93590 0.96564 1.91534 1.31111 1.95305 1.93100 1.21211 0.92292 1.00455 1.14600 1.19070 0.87665 0.88270 0.88116 1.86455 1.32263 1.13210 1.84983 1.23953 0.98733 0.81111 1.01966 1.21913 0.91988 0.90126 0.89954 0.86726 1.86786 1.38594 1.93339 1.14232 1.22563 0.94097 0.93218 1.00130 1.61984 1.23708 1.04388 1.35290 1.22234 0.99023 0.92033 0.97755 1.19801 0.93209 0.97678 0.82670 1.21096 1.06761 1.30116 0.96461 0.91862 1.24985 0.98175 0.96187 0.95279 1.69943 1.38603 1.44274 1.01107 0.86545 0.83144 0.80521 0.77121 1.20064 1.21380 1.20339 0.91866 0.91933 0.92211 0.88706 0.88670 0.83449 0.84046 0.83567 0.91486 0.90828 0.79442 0.94581 0.91840 0.93667 0.90259 0.97303 0.95025 0.99274 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.20 37.16 0.34 -0.97 16 2 C -0.17 -1.28 5.02 -27.89 -0.14 -1.42 16 3 C 0.38 4.66 7.10 -30.92 -0.22 4.44 16 4 O -0.42 -7.13 14.79 -16.41 -0.24 -7.37 16 5 C -0.22 -2.41 5.88 -104.95 -0.62 -3.03 16 6 C -0.01 -0.06 9.46 -39.13 -0.37 -0.43 16 7 C -0.21 -1.60 10.00 -39.57 -0.40 -1.99 16 8 C 0.17 1.64 7.30 -39.27 -0.29 1.35 16 9 F -0.13 -1.31 17.26 2.25 0.04 -1.27 16 10 C -0.27 -2.83 9.00 -39.42 -0.35 -3.19 16 11 C 0.22 2.77 6.70 -38.61 -0.26 2.52 16 12 O -0.26 -4.00 8.17 -44.39 -0.36 -4.36 16 13 C 0.02 0.24 4.37 37.16 0.16 0.40 16 14 C 0.12 2.05 3.31 -26.73 -0.09 1.97 16 15 H 0.12 2.39 6.78 -51.93 -0.35 2.03 16 16 O -0.53 -9.57 13.18 -40.09 -0.53 -10.10 16 17 C 0.03 0.50 4.66 -3.82 -0.02 0.48 16 18 N -0.53 -11.48 4.56 -244.36 -1.11 -12.60 16 19 C 0.04 0.73 9.37 60.06 0.56 1.30 16 20 C 0.19 5.07 4.55 -4.97 -0.02 5.05 16 21 C -0.51 -14.58 8.39 -34.44 -0.29 -14.87 16 22 H 0.06 1.81 7.16 -52.49 -0.38 1.43 16 23 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 24 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 25 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 29 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.15 0.55 7.04 -52.49 -0.37 0.18 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.15 1.38 6.29 -52.49 -0.33 1.05 16 37 H 0.07 0.70 7.65 -51.93 -0.40 0.30 16 38 H 0.07 0.86 7.67 -51.93 -0.40 0.46 16 39 H 0.36 4.84 9.05 45.56 0.41 5.25 16 40 H 0.04 0.61 8.00 -51.93 -0.42 0.19 16 41 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.67 6.66 -51.93 -0.35 1.32 16 44 H 0.01 0.16 8.13 -51.93 -0.42 -0.26 16 45 H 0.03 0.90 6.63 -51.93 -0.34 0.56 16 46 H -0.01 -0.29 8.12 -51.93 -0.42 -0.72 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -35.71 394.02 -8.90 -44.61 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.26 Total: 1.41 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.09 Total: -6.90 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -0.38 Total: -39.17 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -1.13 Total: -21.83 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.71 -8.90 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414121460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.341 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds