Wall clock time and date at job start Wed Apr 1 2020 00:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47171 * 2 1 4 4 O 1.21317 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.46636 * 120.00224 * 179.97438 * 3 2 1 6 6 C 1.40107 * 120.19274 * 359.97438 * 5 3 2 7 7 C 1.37544 * 119.90429 * 180.02562 * 6 5 3 8 8 C 1.38948 * 120.31179 * 0.02562 * 7 6 5 9 9 F 1.35102 * 119.80099 * 179.97438 * 8 7 6 10 10 C 1.38361 * 120.39672 * 359.73992 * 8 7 6 11 11 C 1.38545 * 120.08645 * 0.51336 * 10 8 7 12 12 O 1.35607 * 120.15273 * 179.76997 * 11 10 8 13 13 C 1.42900 * 117.00028 * 359.71780 * 12 11 10 14 14 C 1.53002 * 109.46918 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.46823 * 55.00822 * 14 13 12 16 16 O 1.42899 * 109.47103 * 295.00344 * 14 13 12 17 17 C 1.53000 * 109.46726 * 175.00484 * 14 13 12 18 18 N 1.46904 * 109.46815 * 180.45976 * 17 14 13 19 19 C 1.46899 * 110.99898 * 199.84806 * 18 17 14 20 20 C 1.46907 * 110.99778 * 75.89878 * 18 17 14 21 21 C 1.50705 * 109.46801 * 190.00021 * 20 18 17 22 22 H 1.08000 * 120.00039 * 359.97438 * 21 20 18 23 23 C 1.37881 * 119.99700 * 179.97438 * 21 20 18 24 24 N 1.31512 * 120.00014 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99637 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46948 * 60.00476 * 25 23 21 27 27 H 1.48500 * 109.46796 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47264 * 299.99924 * 25 23 21 29 29 H 1.08997 * 109.47449 * 300.00397 * 1 2 3 30 30 H 1.09002 * 109.47400 * 60.00279 * 1 2 3 31 31 H 1.08998 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47035 * 239.99458 * 2 1 3 33 33 H 1.09004 * 109.46722 * 120.00032 * 2 1 3 34 34 H 1.07997 * 120.04535 * 0.04210 * 6 5 3 35 35 H 1.07999 * 119.84631 * 180.02562 * 7 6 5 36 36 H 1.08002 * 119.95701 * 180.26182 * 10 8 7 37 37 H 1.09001 * 109.46831 * 60.00595 * 13 12 11 38 38 H 1.08996 * 109.47545 * 300.00425 * 13 12 11 39 39 H 0.96698 * 114.00245 * 299.99745 * 16 14 13 40 40 H 1.09000 * 109.47349 * 300.45489 * 17 14 13 41 41 H 1.09001 * 109.47706 * 60.46216 * 17 14 13 42 42 H 1.08999 * 109.47104 * 64.82506 * 19 18 17 43 43 H 1.09004 * 109.47084 * 184.82138 * 19 18 17 44 44 H 1.09003 * 109.47573 * 304.82062 * 19 18 17 45 45 H 1.09002 * 109.46729 * 309.99402 * 20 18 17 46 46 H 1.08997 * 109.47420 * 69.99907 * 20 18 17 47 47 H 0.96996 * 119.99686 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2439 2.3429 -0.0005 5 6 3.4740 1.6887 0.0006 6 6 4.3880 0.6269 0.0017 7 6 5.7390 0.8851 0.0027 8 6 6.2027 2.1949 0.0033 9 9 7.5319 2.4367 0.0048 10 6 5.3113 3.2531 -0.0027 11 6 3.9470 3.0120 0.0015 12 8 3.0721 4.0481 0.0004 13 6 3.6264 5.3652 0.0011 14 6 2.4947 6.3948 0.0003 15 1 1.8287 6.2032 0.8416 16 8 1.7602 6.2943 -1.2213 17 6 3.0844 7.8009 0.1266 18 7 1.9972 8.7888 0.1369 19 6 2.4967 10.1251 -0.2135 20 6 1.3143 8.8064 1.4375 21 6 0.0639 9.6416 1.3370 22 1 -0.1972 10.1125 0.4008 23 6 -0.7469 9.8045 2.4403 24 7 -0.4292 9.2307 3.5802 25 14 -2.2964 10.8402 2.3159 26 1 -3.1992 10.2590 1.2900 27 1 -2.9874 10.8570 3.6302 28 1 -1.9348 12.2274 1.9284 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 4.0323 -0.3928 0.0014 35 1 6.4428 0.0659 0.0031 36 1 5.6795 4.2684 -0.0065 37 1 4.2420 5.5008 -0.8882 38 1 4.2399 5.5009 0.8917 39 1 2.2911 6.4534 -2.0137 40 1 3.6515 7.8751 1.0545 41 1 3.7442 7.9957 -0.7189 42 1 2.8576 10.1198 -1.2420 43 1 1.6901 10.8517 -0.1153 44 1 3.3128 10.3953 0.4566 45 1 1.0493 7.7883 1.7225 46 1 1.9770 9.2336 2.1901 47 1 -0.9998 9.3450 4.3562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414121460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:48 Heat of formation + Delta-G solvation = -165.499627 kcal Electronic energy + Delta-G solvation = -29393.837357 eV Core-core repulsion = 25069.831007 eV Total energy + Delta-G solvation = -4324.006350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.10793 -41.67040 -40.11849 -39.21171 -38.18769 -36.94311 -34.64641 -33.84976 -32.27961 -31.90401 -30.94333 -29.40921 -27.88422 -26.24835 -25.68152 -24.41445 -23.34441 -22.94833 -21.84571 -20.64296 -19.63780 -18.67311 -18.29389 -17.76345 -17.68572 -17.17796 -16.95690 -16.79345 -16.65399 -16.32504 -16.21043 -15.92584 -15.78633 -15.44549 -15.41609 -14.95884 -14.76309 -14.20686 -14.08511 -14.00508 -13.96155 -13.44230 -13.23060 -13.11135 -13.04780 -12.95732 -12.72211 -12.64637 -12.57925 -12.37349 -12.33226 -12.18050 -12.03160 -11.95297 -11.60755 -11.38621 -10.98024 -10.63379 -10.55939 -10.09270 -9.43013 -9.00978 -8.23182 -6.32952 -0.50473 0.18591 1.37261 1.38899 1.42222 1.49555 1.87577 2.38345 2.55992 2.94279 3.08981 3.11608 3.19181 3.45869 3.59043 3.74759 3.83019 3.88346 3.95813 4.06446 4.11416 4.20989 4.23406 4.26963 4.32526 4.43992 4.51055 4.59335 4.73179 4.75660 4.81734 4.92892 4.94774 5.00802 5.05746 5.06874 5.09590 5.14798 5.16111 5.26311 5.37113 5.58568 5.61566 6.02542 6.19175 6.29764 6.58488 6.75453 6.82322 6.95530 7.36271 8.88114 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.002703 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.510521 B =10355.093501 C =12006.348219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.379 3.621 4 O -0.486 6.486 5 C -0.240 4.240 6 C 0.013 3.987 7 C -0.198 4.198 8 C 0.163 3.837 9 F -0.134 7.134 10 C -0.273 4.273 11 C 0.187 3.813 12 O -0.296 6.296 13 C 0.029 3.971 14 C 0.126 3.874 15 H 0.060 0.940 16 O -0.555 6.555 17 C 0.033 3.967 18 N -0.544 5.544 19 C 0.040 3.960 20 C 0.209 3.791 21 C -0.525 4.525 22 H 0.062 0.938 23 C -0.001 4.001 24 N -0.936 5.936 25 Si 0.970 3.030 26 H -0.272 1.272 27 H -0.281 1.281 28 H -0.262 1.262 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.194 0.806 35 H 0.177 0.823 36 H 0.152 0.848 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.381 0.619 40 H 0.037 0.963 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.016 0.984 45 H -0.003 1.003 46 H -0.036 1.036 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.521 -22.350 -9.923 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.258 3.742 4 O -0.363 6.363 5 C -0.241 4.241 6 C -0.004 4.004 7 C -0.217 4.217 8 C 0.144 3.856 9 F -0.113 7.113 10 C -0.292 4.292 11 C 0.139 3.861 12 O -0.208 6.208 13 C -0.047 4.047 14 C 0.066 3.934 15 H 0.078 0.922 16 O -0.360 6.360 17 C -0.096 4.096 18 N -0.268 5.268 19 C -0.108 4.108 20 C 0.082 3.918 21 C -0.563 4.563 22 H 0.081 0.919 23 C -0.199 4.199 24 N -0.576 5.576 25 Si 0.794 3.206 26 H -0.197 1.197 27 H -0.207 1.207 28 H -0.187 1.187 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.211 0.789 35 H 0.194 0.806 36 H 0.170 0.830 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.229 0.771 40 H 0.056 0.944 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.015 0.985 46 H -0.019 1.019 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.049 -22.105 -9.694 28.444 hybrid contribution 0.586 1.529 0.852 1.846 sum 15.635 -20.576 -8.842 27.313 Atomic orbital electron populations 1.21616 0.95023 1.02659 1.01239 1.22062 0.97234 0.93011 1.07253 1.22993 0.87406 0.92816 0.70939 1.90694 1.59073 1.49404 1.37115 1.20407 0.96822 0.91031 1.15877 1.21571 0.90485 0.99479 0.88893 1.21386 0.97487 0.95030 1.07750 1.17884 0.76808 0.94317 0.96604 1.91532 1.31195 1.95424 1.93116 1.21252 0.91668 1.01403 1.14912 1.19424 0.88217 0.88312 0.90151 1.86400 1.34070 1.14171 1.86110 1.23754 0.96936 0.79956 1.04012 1.21641 0.92058 0.91729 0.88014 0.92218 1.86722 1.40256 1.93637 1.15412 1.22644 0.93171 0.91767 1.02028 1.61858 1.26232 1.06706 1.32044 1.22257 0.98342 0.90079 1.00144 1.19387 0.92851 0.94937 0.84603 1.21453 1.07834 1.30463 0.96564 0.91948 1.25958 1.01735 0.97418 0.94804 1.70081 1.40047 1.45605 1.01902 0.85423 0.78609 0.79200 0.77325 1.19713 1.20654 1.18702 0.94513 0.94137 0.89254 0.85016 0.85339 0.78864 0.80588 0.83034 0.88164 0.89794 0.77078 0.94447 0.87330 0.89729 0.92589 0.96531 0.98470 1.01875 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.20 71.98 0.66 -1.97 16 2 C -0.16 -2.07 5.02 29.84 0.15 -1.92 16 3 C 0.38 9.28 7.10 27.88 0.20 9.47 16 4 O -0.49 -18.09 14.79 17.83 0.26 -17.82 16 5 C -0.24 -5.05 5.88 -20.07 -0.12 -5.16 16 6 C 0.01 0.14 9.46 22.56 0.21 0.36 16 7 C -0.20 -2.17 10.00 22.28 0.22 -1.95 16 8 C 0.16 2.74 7.30 22.47 0.16 2.91 16 9 F -0.13 -2.35 17.26 44.97 0.78 -1.57 16 10 C -0.27 -5.58 9.00 22.37 0.20 -5.37 16 11 C 0.19 4.81 6.70 22.90 0.15 4.97 16 12 O -0.30 -9.72 8.17 -64.44 -0.53 -10.25 16 13 C 0.03 0.79 4.37 71.98 0.31 1.10 16 14 C 0.13 4.55 3.31 30.59 0.10 4.66 16 15 H 0.06 2.80 6.78 -2.39 -0.02 2.78 16 16 O -0.55 -21.04 13.18 -144.33 -1.90 -22.95 16 17 C 0.03 1.12 4.66 86.30 0.40 1.52 16 18 N -0.54 -24.19 4.56 -927.00 -4.22 -28.42 16 19 C 0.04 1.51 9.37 127.69 1.20 2.70 16 20 C 0.21 11.72 4.55 85.56 0.39 12.11 16 21 C -0.52 -31.46 8.39 25.60 0.21 -31.25 16 22 H 0.06 3.66 7.16 -2.91 -0.02 3.64 16 23 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 24 N -0.94 -59.07 13.29 21.45 0.28 -58.78 16 25 Si 0.97 46.53 29.54 68.60 2.03 48.55 16 26 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 28 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 29 H 0.04 0.83 8.10 -2.39 -0.02 0.81 16 30 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.13 0.80 8.09 -2.39 -0.02 0.78 16 33 H 0.13 0.88 8.08 -2.38 -0.02 0.86 16 34 H 0.19 0.23 7.04 -2.91 -0.02 0.21 16 35 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 36 H 0.15 2.74 6.29 -2.91 -0.02 2.73 16 37 H 0.10 1.99 7.65 -2.39 -0.02 1.97 16 38 H 0.08 2.03 7.67 -2.39 -0.02 2.01 16 39 H 0.38 10.22 9.05 -74.06 -0.67 9.55 16 40 H 0.04 1.28 8.00 -2.39 -0.02 1.26 16 41 H 0.11 2.75 7.94 -2.39 -0.02 2.73 16 42 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.06 2.37 6.66 -2.39 -0.02 2.35 16 44 H 0.02 0.59 8.13 -2.39 -0.02 0.57 16 45 H 0.00 -0.17 6.63 -2.39 -0.02 -0.19 16 46 H -0.04 -2.17 8.12 -2.39 -0.02 -2.19 16 47 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -86.39 394.02 1.94 -84.44 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.32 Total: 14.25 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 4.93 Total: -7.46 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -3.94 Total: -87.20 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -2.16 Total: -51.02 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.78 Total: -1.57 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -86.39 1.94 -84.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414121460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.055 kcal (2) G-P(sol) polarization free energy of solvation -86.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds