Wall clock time and date at job start Wed Apr 1 2020 00:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47139 * 2 1 4 4 O 1.21314 * 120.00274 * 359.97438 * 3 2 1 5 5 C 1.46639 * 119.99777 * 179.97438 * 3 2 1 6 6 C 1.40101 * 120.19764 * 359.97438 * 5 3 2 7 7 C 1.37545 * 119.90900 * 180.02562 * 6 5 3 8 8 C 1.38942 * 120.30780 * 0.02562 * 7 6 5 9 9 F 1.35106 * 119.80291 * 179.97438 * 8 7 6 10 10 C 1.38365 * 120.40233 * 359.73983 * 8 7 6 11 11 C 1.38546 * 120.08075 * 0.51744 * 10 8 7 12 12 O 1.35605 * 120.15347 * 179.76889 * 11 10 8 13 13 C 1.42903 * 116.99800 * 359.71827 * 12 11 10 14 14 C 1.53000 * 109.47039 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.47253 * 305.00429 * 14 13 12 16 16 O 1.42900 * 109.47194 * 64.99836 * 14 13 12 17 17 C 1.52998 * 109.47107 * 184.99933 * 14 13 12 18 18 N 1.46899 * 109.46858 * 175.04575 * 17 14 13 19 19 C 1.46903 * 110.99991 * 163.94840 * 18 17 14 20 20 C 1.46902 * 111.00138 * 287.89426 * 18 17 14 21 21 C 1.50702 * 109.47206 * 170.00004 * 20 18 17 22 22 H 1.07990 * 119.99891 * 0.02562 * 21 20 18 23 23 C 1.37878 * 119.99588 * 179.97438 * 21 20 18 24 24 N 1.31512 * 120.00136 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99737 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.46844 * 90.00277 * 25 23 21 27 27 H 1.48497 * 109.47088 * 210.00471 * 25 23 21 28 28 H 1.48503 * 109.46723 * 330.00198 * 25 23 21 29 29 H 1.09001 * 109.46885 * 300.00539 * 1 2 3 30 30 H 1.09003 * 109.46820 * 60.00051 * 1 2 3 31 31 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47413 * 240.00009 * 2 1 3 33 33 H 1.09003 * 109.46820 * 119.99949 * 2 1 3 34 34 H 1.08000 * 120.04506 * 0.03800 * 6 5 3 35 35 H 1.08000 * 119.84889 * 180.02562 * 7 6 5 36 36 H 1.08007 * 119.96254 * 180.25557 * 10 8 7 37 37 H 1.08996 * 109.47308 * 60.00035 * 13 12 11 38 38 H 1.09001 * 109.46918 * 299.99904 * 13 12 11 39 39 H 0.96698 * 114.00266 * 60.00042 * 16 14 13 40 40 H 1.08997 * 109.47560 * 55.04389 * 17 14 13 41 41 H 1.08998 * 109.46907 * 295.04026 * 17 14 13 42 42 H 1.08998 * 109.47439 * 189.27288 * 19 18 17 43 43 H 1.08994 * 109.47470 * 69.26701 * 19 18 17 44 44 H 1.09004 * 109.46549 * 309.26905 * 19 18 17 45 45 H 1.08997 * 109.47475 * 290.00611 * 20 18 17 46 46 H 1.09000 * 109.46537 * 50.00068 * 20 18 17 47 47 H 0.97003 * 119.99947 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2441 2.3429 -0.0005 5 6 3.4741 1.6887 0.0006 6 6 4.3881 0.6269 0.0017 7 6 5.7391 0.8850 0.0027 8 6 6.2028 2.1948 0.0033 9 9 7.5320 2.4366 0.0048 10 6 5.3114 3.2531 -0.0027 11 6 3.9471 3.0120 0.0016 12 8 3.0723 4.0481 0.0005 13 6 3.6267 5.3652 0.0011 14 6 2.4949 6.3948 0.0004 15 1 1.8301 6.2034 -0.8420 16 8 1.7585 6.2941 1.2208 17 6 3.0849 7.8010 -0.1247 18 7 1.9961 8.7798 -0.2447 19 6 2.4819 10.1419 0.0134 20 6 1.3517 8.6916 -1.5619 21 6 0.0969 9.5262 -1.5642 22 1 -0.1927 10.0683 -0.6762 23 6 -0.6808 9.5986 -2.7004 24 7 -0.3279 8.9388 -3.7819 25 14 -2.2359 10.6337 -2.7034 26 1 -1.9098 12.0154 -3.1390 27 1 -3.2240 10.0398 -3.6394 28 1 -2.8098 10.6686 -1.3343 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0324 -0.3928 0.0015 35 1 6.4429 0.0658 0.0031 36 1 5.6797 4.2684 -0.0064 37 1 4.2422 5.5007 -0.8881 38 1 4.2401 5.5008 0.8918 39 1 2.2881 6.4529 2.0141 40 1 3.7184 7.8518 -1.0102 41 1 3.6794 8.0256 0.7608 42 1 1.6340 10.8234 0.0810 43 1 3.1356 10.4549 -0.8007 44 1 3.0367 10.1580 0.9515 45 1 2.0352 9.0611 -2.3263 46 1 1.0976 7.6529 -1.7732 47 1 -0.8753 8.9895 -4.5812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414121462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:53 Heat of formation + Delta-G solvation = -139.678179 kcal Electronic energy + Delta-G solvation = -29428.188392 eV Core-core repulsion = 25105.301744 eV Total energy + Delta-G solvation = -4322.886648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.36338 -40.78329 -39.05869 -38.00007 -37.10063 -35.37937 -33.07571 -32.47823 -31.35571 -30.96430 -29.90157 -27.38324 -26.58782 -25.40395 -24.04582 -23.30973 -22.45177 -21.73127 -20.17885 -19.81432 -18.75535 -17.39584 -16.94424 -16.69582 -16.37526 -16.19211 -15.98511 -15.78692 -15.49433 -15.12332 -14.82594 -14.76419 -14.60279 -14.37996 -13.98336 -13.61311 -13.41852 -13.30476 -13.13376 -12.67433 -12.50695 -12.28414 -12.19581 -12.01099 -11.94057 -11.67699 -11.47717 -11.30937 -11.19742 -11.12335 -10.93678 -10.71205 -10.65461 -10.35717 -9.77549 -9.70807 -9.64394 -9.35410 -9.14840 -8.61110 -8.39545 -7.25327 -5.99038 -3.99606 0.27185 0.90876 2.21294 2.82223 3.31155 3.35344 3.41619 3.47038 3.69717 3.85702 4.22908 4.43916 4.51639 4.59888 4.64465 4.69182 4.79148 4.88522 4.93378 4.99100 5.03525 5.16656 5.34745 5.36552 5.38776 5.43512 5.52383 5.59063 5.61065 5.63434 5.72336 5.79039 5.87465 5.91707 6.03623 6.10941 6.24672 6.30687 6.39012 6.69059 7.08068 7.26309 7.29178 7.60374 7.81024 8.05555 8.09488 8.19329 8.54908 9.07069 9.64222 11.12190 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011424 B = 0.002750 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.413962 B =10177.606096 C =11808.917989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.383 3.617 4 O -0.416 6.416 5 C -0.218 4.218 6 C -0.008 4.008 7 C -0.211 4.211 8 C 0.171 3.829 9 F -0.132 7.132 10 C -0.266 4.266 11 C 0.218 3.782 12 O -0.259 6.259 13 C 0.019 3.981 14 C 0.119 3.881 15 H 0.118 0.882 16 O -0.529 6.529 17 C 0.030 3.970 18 N -0.531 5.531 19 C 0.041 3.959 20 C 0.190 3.810 21 C -0.505 4.505 22 H 0.063 0.937 23 C 0.054 3.946 24 N -0.900 5.900 25 Si 0.898 3.102 26 H -0.282 1.282 27 H -0.287 1.287 28 H -0.272 1.272 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.360 0.640 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.013 0.987 44 H 0.043 0.957 45 H -0.010 1.010 46 H 0.033 0.967 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.323 -19.625 9.123 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.204 4.204 3 C 0.258 3.742 4 O -0.288 6.288 5 C -0.220 4.220 6 C -0.026 4.026 7 C -0.230 4.230 8 C 0.151 3.849 9 F -0.111 7.111 10 C -0.286 4.286 11 C 0.169 3.831 12 O -0.169 6.169 13 C -0.057 4.057 14 C 0.059 3.941 15 H 0.135 0.865 16 O -0.331 6.331 17 C -0.099 4.099 18 N -0.255 5.255 19 C -0.107 4.107 20 C 0.066 3.934 21 C -0.543 4.543 22 H 0.082 0.918 23 C -0.147 4.147 24 N -0.539 5.539 25 Si 0.726 3.274 26 H -0.208 1.208 27 H -0.212 1.212 28 H -0.197 1.197 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.205 0.795 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.031 0.969 44 H 0.061 0.939 45 H 0.008 0.992 46 H 0.051 0.949 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.794 -19.352 8.872 24.837 hybrid contribution 1.119 0.963 -0.517 1.564 sum 13.912 -18.389 8.355 24.526 Atomic orbital electron populations 1.21598 0.93487 1.01605 1.03570 1.21961 0.98589 0.95711 1.04101 1.22110 0.87118 0.91453 0.73494 1.90705 1.57507 1.47109 1.33497 1.20103 0.96564 0.90524 1.14801 1.21102 0.91297 0.98599 0.91592 1.20946 0.96817 0.95116 1.10150 1.17663 0.77084 0.93589 0.96577 1.91535 1.31113 1.95305 1.93104 1.21213 0.92291 1.00454 1.14597 1.19072 0.87665 0.88270 0.88116 1.86455 1.32257 1.13204 1.84981 1.23947 0.98702 0.81125 1.01967 1.21957 0.92067 0.90133 0.89993 0.86460 1.86791 1.38643 1.93392 1.14267 1.22575 0.94025 0.93198 1.00150 1.62016 1.25118 1.02898 1.35450 1.22191 0.99395 0.91378 0.97731 1.19830 0.93657 0.97865 0.82093 1.21124 1.07106 1.28279 0.97808 0.91843 1.24987 0.98137 0.96042 0.95495 1.69953 1.39080 1.42383 1.02510 0.86487 0.82892 0.80009 0.77999 1.20828 1.21235 1.19698 0.91934 0.91860 0.92213 0.88666 0.88714 0.83449 0.84046 0.83568 0.90799 0.91505 0.79455 0.94792 0.91714 0.90748 0.96882 0.93850 0.99238 0.94937 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.20 37.16 0.34 -0.99 16 2 C -0.17 -1.30 5.02 -27.88 -0.14 -1.44 16 3 C 0.38 4.71 7.10 -30.92 -0.22 4.49 16 4 O -0.42 -7.18 14.79 -16.41 -0.24 -7.43 16 5 C -0.22 -2.43 5.88 -104.95 -0.62 -3.05 16 6 C -0.01 -0.06 9.46 -39.14 -0.37 -0.43 16 7 C -0.21 -1.62 10.00 -39.57 -0.40 -2.01 16 8 C 0.17 1.65 7.30 -39.27 -0.29 1.36 16 9 F -0.13 -1.32 17.26 2.25 0.04 -1.28 16 10 C -0.27 -2.86 9.00 -39.42 -0.35 -3.22 16 11 C 0.22 2.80 6.70 -38.60 -0.26 2.54 16 12 O -0.26 -4.03 8.17 -44.38 -0.36 -4.39 16 13 C 0.02 0.25 4.37 37.16 0.16 0.41 16 14 C 0.12 2.03 3.30 -26.73 -0.09 1.95 16 15 H 0.12 2.48 6.46 -51.93 -0.34 2.14 16 16 O -0.53 -9.56 13.25 -40.08 -0.53 -10.09 16 17 C 0.03 0.51 4.61 -3.83 -0.02 0.49 16 18 N -0.53 -11.52 4.66 -244.37 -1.14 -12.66 16 19 C 0.04 0.80 9.32 60.07 0.56 1.36 16 20 C 0.19 5.04 4.57 -4.97 -0.02 5.02 16 21 C -0.50 -14.57 8.58 -34.44 -0.30 -14.87 16 22 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 23 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 24 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 25 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.15 0.57 7.04 -52.49 -0.37 0.20 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.15 1.40 6.29 -52.48 -0.33 1.07 16 37 H 0.07 0.88 7.65 -51.93 -0.40 0.48 16 38 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 39 H 0.36 4.77 9.05 45.56 0.41 5.18 16 40 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 41 H 0.06 0.90 7.82 -51.93 -0.41 0.49 16 42 H 0.07 1.53 7.02 -51.93 -0.36 1.17 16 43 H 0.01 0.24 8.07 -51.93 -0.42 -0.17 16 44 H 0.04 0.69 7.88 -51.93 -0.41 0.28 16 45 H -0.01 -0.28 8.07 -51.93 -0.42 -0.70 16 46 H 0.03 0.93 6.34 -51.93 -0.33 0.60 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -35.83 393.53 -8.91 -44.74 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.22 Total: 1.43 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.10 Total: -6.89 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.40 Total: -39.24 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -1.14 Total: -21.91 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.83 -8.91 -44.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414121462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.942 kcal (2) G-P(sol) polarization free energy of solvation -35.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds