Wall clock time and date at job start Wed Apr 1 2020 00:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47139 * 2 1 4 4 O 1.21314 * 120.00274 * 359.97438 * 3 2 1 5 5 C 1.46639 * 119.99777 * 179.97438 * 3 2 1 6 6 C 1.40101 * 120.19764 * 359.97438 * 5 3 2 7 7 C 1.37545 * 119.90900 * 180.02562 * 6 5 3 8 8 C 1.38942 * 120.30780 * 0.02562 * 7 6 5 9 9 F 1.35106 * 119.80291 * 179.97438 * 8 7 6 10 10 C 1.38365 * 120.40233 * 359.73983 * 8 7 6 11 11 C 1.38546 * 120.08075 * 0.51744 * 10 8 7 12 12 O 1.35605 * 120.15347 * 179.76889 * 11 10 8 13 13 C 1.42903 * 116.99800 * 359.71827 * 12 11 10 14 14 C 1.53000 * 109.47039 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.47253 * 305.00429 * 14 13 12 16 16 O 1.42900 * 109.47194 * 64.99836 * 14 13 12 17 17 C 1.52998 * 109.47107 * 184.99933 * 14 13 12 18 18 N 1.46899 * 109.46858 * 175.04575 * 17 14 13 19 19 C 1.46903 * 110.99991 * 163.94840 * 18 17 14 20 20 C 1.46902 * 111.00138 * 287.89426 * 18 17 14 21 21 C 1.50702 * 109.47206 * 170.00004 * 20 18 17 22 22 H 1.07990 * 119.99891 * 0.02562 * 21 20 18 23 23 C 1.37878 * 119.99588 * 179.97438 * 21 20 18 24 24 N 1.31512 * 120.00136 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99737 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.46844 * 90.00277 * 25 23 21 27 27 H 1.48497 * 109.47088 * 210.00471 * 25 23 21 28 28 H 1.48503 * 109.46723 * 330.00198 * 25 23 21 29 29 H 1.09001 * 109.46885 * 300.00539 * 1 2 3 30 30 H 1.09003 * 109.46820 * 60.00051 * 1 2 3 31 31 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47413 * 240.00009 * 2 1 3 33 33 H 1.09003 * 109.46820 * 119.99949 * 2 1 3 34 34 H 1.08000 * 120.04506 * 0.03800 * 6 5 3 35 35 H 1.08000 * 119.84889 * 180.02562 * 7 6 5 36 36 H 1.08007 * 119.96254 * 180.25557 * 10 8 7 37 37 H 1.08996 * 109.47308 * 60.00035 * 13 12 11 38 38 H 1.09001 * 109.46918 * 299.99904 * 13 12 11 39 39 H 0.96698 * 114.00266 * 60.00042 * 16 14 13 40 40 H 1.08997 * 109.47560 * 55.04389 * 17 14 13 41 41 H 1.08998 * 109.46907 * 295.04026 * 17 14 13 42 42 H 1.08998 * 109.47439 * 189.27288 * 19 18 17 43 43 H 1.08994 * 109.47470 * 69.26701 * 19 18 17 44 44 H 1.09004 * 109.46549 * 309.26905 * 19 18 17 45 45 H 1.08997 * 109.47475 * 290.00611 * 20 18 17 46 46 H 1.09000 * 109.46537 * 50.00068 * 20 18 17 47 47 H 0.97003 * 119.99947 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2441 2.3429 -0.0005 5 6 3.4741 1.6887 0.0006 6 6 4.3881 0.6269 0.0017 7 6 5.7391 0.8850 0.0027 8 6 6.2028 2.1948 0.0033 9 9 7.5320 2.4366 0.0048 10 6 5.3114 3.2531 -0.0027 11 6 3.9471 3.0120 0.0016 12 8 3.0723 4.0481 0.0005 13 6 3.6267 5.3652 0.0011 14 6 2.4949 6.3948 0.0004 15 1 1.8301 6.2034 -0.8420 16 8 1.7585 6.2941 1.2208 17 6 3.0849 7.8010 -0.1247 18 7 1.9961 8.7798 -0.2447 19 6 2.4819 10.1419 0.0134 20 6 1.3517 8.6916 -1.5619 21 6 0.0969 9.5262 -1.5642 22 1 -0.1927 10.0683 -0.6762 23 6 -0.6808 9.5986 -2.7004 24 7 -0.3279 8.9388 -3.7819 25 14 -2.2359 10.6337 -2.7034 26 1 -1.9098 12.0154 -3.1390 27 1 -3.2240 10.0398 -3.6394 28 1 -2.8098 10.6686 -1.3343 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0324 -0.3928 0.0015 35 1 6.4429 0.0658 0.0031 36 1 5.6797 4.2684 -0.0064 37 1 4.2422 5.5007 -0.8881 38 1 4.2401 5.5008 0.8918 39 1 2.2881 6.4529 2.0141 40 1 3.7184 7.8518 -1.0102 41 1 3.6794 8.0256 0.7608 42 1 1.6340 10.8234 0.0810 43 1 3.1356 10.4549 -0.8007 44 1 3.0367 10.1580 0.9515 45 1 2.0352 9.0611 -2.3263 46 1 1.0976 7.6529 -1.7732 47 1 -0.8753 8.9895 -4.5812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414121462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:52 Heat of formation + Delta-G solvation = -165.478033 kcal Electronic energy + Delta-G solvation = -29429.307158 eV Core-core repulsion = 25105.301744 eV Total energy + Delta-G solvation = -4324.005413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.10825 -41.67324 -40.12670 -39.22588 -38.19040 -36.95592 -34.65253 -33.85059 -32.27756 -31.90317 -30.94055 -29.43042 -27.88174 -26.24712 -25.67934 -24.43316 -23.35573 -22.96365 -21.83823 -20.64481 -19.63826 -18.68647 -18.30879 -17.76399 -17.68478 -17.18649 -16.95732 -16.78613 -16.65064 -16.33077 -16.22521 -15.92733 -15.78646 -15.46697 -15.41880 -14.96732 -14.76538 -14.22148 -14.09057 -14.00570 -13.95717 -13.44454 -13.21545 -13.10993 -13.04879 -12.95062 -12.72345 -12.65608 -12.60263 -12.37733 -12.34484 -12.19860 -12.03440 -11.95466 -11.60032 -11.36968 -10.99094 -10.63647 -10.56031 -10.09440 -9.43197 -9.01963 -8.23550 -6.33280 -0.50601 0.18409 1.36848 1.38801 1.39980 1.51475 1.87495 2.38107 2.55825 2.94143 3.08686 3.11473 3.18886 3.44884 3.58309 3.74345 3.82556 3.87849 3.95455 4.06126 4.10780 4.21238 4.22782 4.26702 4.32459 4.44174 4.52294 4.57116 4.73048 4.75546 4.81566 4.92636 4.94401 5.00662 5.04971 5.06673 5.09517 5.13410 5.15987 5.26573 5.37022 5.58489 5.61618 6.02090 6.18933 6.28930 6.58356 6.75389 6.82132 6.94708 7.36121 8.87915 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011424 B = 0.002750 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.413962 B =10177.606096 C =11808.917989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.379 3.621 4 O -0.486 6.486 5 C -0.240 4.240 6 C 0.013 3.987 7 C -0.198 4.198 8 C 0.164 3.836 9 F -0.134 7.134 10 C -0.273 4.273 11 C 0.187 3.813 12 O -0.296 6.296 13 C 0.029 3.971 14 C 0.124 3.876 15 H 0.061 0.939 16 O -0.555 6.555 17 C 0.033 3.967 18 N -0.546 5.546 19 C 0.043 3.957 20 C 0.208 3.792 21 C -0.524 4.524 22 H 0.062 0.938 23 C -0.002 4.002 24 N -0.936 5.936 25 Si 0.970 3.030 26 H -0.267 1.267 27 H -0.282 1.282 28 H -0.267 1.267 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.194 0.806 35 H 0.177 0.823 36 H 0.152 0.848 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.382 0.618 40 H 0.037 0.963 41 H 0.110 0.890 42 H 0.055 0.945 43 H 0.011 0.989 44 H 0.087 0.913 45 H -0.036 1.036 46 H -0.001 1.001 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.311 -21.660 10.558 29.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.258 3.742 4 O -0.363 6.363 5 C -0.241 4.241 6 C -0.004 4.004 7 C -0.216 4.216 8 C 0.144 3.856 9 F -0.113 7.113 10 C -0.292 4.292 11 C 0.139 3.861 12 O -0.208 6.208 13 C -0.047 4.047 14 C 0.064 3.936 15 H 0.079 0.921 16 O -0.361 6.361 17 C -0.096 4.096 18 N -0.270 5.270 19 C -0.105 4.105 20 C 0.081 3.919 21 C -0.562 4.562 22 H 0.080 0.920 23 C -0.199 4.199 24 N -0.576 5.576 25 Si 0.795 3.205 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.191 1.191 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.212 0.788 35 H 0.194 0.806 36 H 0.170 0.830 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.230 0.770 40 H 0.056 0.944 41 H 0.128 0.872 42 H 0.074 0.926 43 H 0.030 0.970 44 H 0.105 0.895 45 H -0.019 1.019 46 H 0.017 0.983 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.834 -21.404 10.334 28.017 hybrid contribution 0.608 1.472 -0.918 1.838 sum 15.441 -19.932 9.416 26.914 Atomic orbital electron populations 1.21618 0.95021 1.02662 1.01234 1.22063 0.97238 0.92995 1.07256 1.22998 0.87407 0.92825 0.70941 1.90694 1.59077 1.49409 1.37109 1.20410 0.96831 0.91030 1.15871 1.21571 0.90486 0.99478 0.88889 1.21386 0.97484 0.95029 1.07739 1.17883 0.76806 0.94312 0.96605 1.91533 1.31186 1.95424 1.93117 1.21254 0.91668 1.01405 1.14921 1.19429 0.88222 0.88316 0.90160 1.86402 1.34077 1.14176 1.86112 1.23755 0.96937 0.79981 1.03993 1.21674 0.92092 0.91792 0.88052 0.92111 1.86726 1.40287 1.93690 1.15438 1.22665 0.92914 0.91738 1.02248 1.61875 1.27750 1.05272 1.32087 1.22217 0.98978 0.89507 0.99770 1.19416 0.93116 0.95229 0.84108 1.21474 1.08214 1.28634 0.97920 0.92015 1.25960 1.01720 0.97264 0.95003 1.70089 1.40573 1.43759 1.03212 0.85364 0.78355 0.78616 0.78197 1.19267 1.20742 1.19105 0.94108 0.94554 0.89236 0.85356 0.84984 0.78850 0.80564 0.83048 0.89895 0.88094 0.77011 0.94438 0.87188 0.92644 0.97037 0.89488 1.01877 0.98265 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.20 71.98 0.66 -2.01 16 2 C -0.16 -2.11 5.02 29.85 0.15 -1.96 16 3 C 0.38 9.38 7.10 27.88 0.20 9.58 16 4 O -0.49 -18.25 14.79 17.84 0.26 -17.99 16 5 C -0.24 -5.11 5.88 -20.07 -0.12 -5.23 16 6 C 0.01 0.15 9.46 22.56 0.21 0.36 16 7 C -0.20 -2.21 10.00 22.27 0.22 -1.99 16 8 C 0.16 2.78 7.30 22.47 0.16 2.94 16 9 F -0.13 -2.37 17.26 44.97 0.78 -1.59 16 10 C -0.27 -5.66 9.00 22.37 0.20 -5.45 16 11 C 0.19 4.87 6.70 22.90 0.15 5.02 16 12 O -0.30 -9.84 8.17 -64.43 -0.53 -10.36 16 13 C 0.03 0.79 4.37 71.98 0.31 1.11 16 14 C 0.12 4.52 3.30 30.59 0.10 4.62 16 15 H 0.06 2.89 6.46 -2.39 -0.02 2.88 16 16 O -0.56 -21.00 13.25 -144.34 -1.91 -22.91 16 17 C 0.03 1.13 4.61 86.30 0.40 1.52 16 18 N -0.55 -24.30 4.66 -927.06 -4.32 -28.61 16 19 C 0.04 1.64 9.32 127.69 1.19 2.83 16 20 C 0.21 11.68 4.57 85.56 0.39 12.07 16 21 C -0.52 -31.49 8.58 25.60 0.22 -31.27 16 22 H 0.06 3.64 7.10 -2.92 -0.02 3.62 16 23 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 24 N -0.94 -59.13 13.29 21.45 0.28 -58.84 16 25 Si 0.97 46.63 29.54 68.60 2.03 48.66 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 27 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 28 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 29 H 0.04 0.89 8.10 -2.39 -0.02 0.87 16 30 H 0.04 0.83 8.10 -2.39 -0.02 0.81 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.13 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.13 0.82 8.08 -2.39 -0.02 0.80 16 34 H 0.19 0.26 7.04 -2.91 -0.02 0.24 16 35 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 36 H 0.15 2.79 6.29 -2.91 -0.02 2.77 16 37 H 0.08 2.05 7.65 -2.39 -0.02 2.04 16 38 H 0.10 2.02 7.67 -2.39 -0.02 2.00 16 39 H 0.38 10.06 9.05 -74.06 -0.67 9.39 16 40 H 0.04 1.27 8.05 -2.39 -0.02 1.25 16 41 H 0.11 2.77 7.82 -2.39 -0.02 2.75 16 42 H 0.05 2.29 7.02 -2.39 -0.02 2.27 16 43 H 0.01 0.43 8.07 -2.39 -0.02 0.41 16 44 H 0.09 2.53 7.88 -2.39 -0.02 2.52 16 45 H -0.04 -2.18 8.07 -2.39 -0.02 -2.20 16 46 H 0.00 -0.04 6.34 -2.39 -0.02 -0.06 16 47 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -86.84 393.53 1.84 -84.99 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.32 Total: 14.16 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 4.92 Total: -7.51 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -4.03 Total: -87.46 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -2.18 Total: -51.26 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.78 Total: -1.59 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -86.84 1.84 -84.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414121462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.483 kcal (2) G-P(sol) polarization free energy of solvation -86.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds