Wall clock time and date at job start Wed Apr 1 2020 00:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47101 * 2 1 4 4 O 1.21296 * 119.99866 * 359.97438 * 3 2 1 5 5 C 1.46858 * 119.99962 * 180.02562 * 3 2 1 6 6 C 1.40028 * 120.10737 * 0.02562 * 5 3 2 7 7 C 1.37620 * 119.92529 * 179.70179 * 6 5 3 8 8 C 1.39013 * 120.14162 * 0.54933 * 7 6 5 9 9 O 1.35707 * 119.89200 * 179.71786 * 8 7 6 10 10 C 1.42906 * 117.00308 * 359.73329 * 9 8 7 11 11 C 1.52998 * 109.47322 * 179.97438 * 10 9 8 12 12 H 1.08992 * 109.47135 * 54.99494 * 11 10 9 13 13 O 1.42897 * 109.46674 * 294.99501 * 11 10 9 14 14 C 1.53004 * 109.46799 * 174.99810 * 11 10 9 15 15 N 1.46898 * 109.46619 * 184.99872 * 14 11 10 16 16 C 1.46901 * 111.00443 * 66.04574 * 15 14 11 17 17 C 1.46906 * 110.99820 * 189.99887 * 15 14 11 18 18 C 1.50696 * 109.47351 * 169.99890 * 17 15 14 19 19 H 1.08007 * 119.99780 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00506 * 180.02562 * 18 17 15 21 21 N 1.31510 * 120.00248 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99357 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46811 * 90.00524 * 22 20 18 24 24 H 1.48502 * 109.46643 * 209.99901 * 22 20 18 25 25 H 1.48499 * 109.47300 * 329.99977 * 22 20 18 26 26 C 1.39255 * 120.21529 * 359.44836 * 8 7 6 27 27 F 1.35095 * 119.96010 * 180.29636 * 26 8 7 28 28 C 1.37785 * 120.07294 * 0.27282 * 26 8 7 29 29 H 1.09000 * 109.46659 * 300.00081 * 1 2 3 30 30 H 1.08998 * 109.46783 * 60.00205 * 1 2 3 31 31 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46659 * 239.99919 * 2 1 3 33 33 H 1.08998 * 109.46783 * 119.99795 * 2 1 3 34 34 H 1.07998 * 120.03664 * 359.97438 * 6 5 3 35 35 H 1.08000 * 119.92795 * 180.28659 * 7 6 5 36 36 H 1.08994 * 109.46880 * 59.98975 * 10 9 8 37 37 H 1.09004 * 109.46141 * 299.99768 * 10 9 8 38 38 H 0.96701 * 114.00549 * 300.00026 * 13 11 10 39 39 H 1.08994 * 109.47270 * 64.99737 * 14 11 10 40 40 H 1.08999 * 109.47017 * 304.99614 * 14 11 10 41 41 H 1.09002 * 109.47401 * 183.95136 * 16 15 14 42 42 H 1.09001 * 109.46874 * 63.95149 * 16 15 14 43 43 H 1.09004 * 109.46970 * 303.95282 * 16 15 14 44 44 H 1.08997 * 109.46995 * 289.99871 * 17 15 14 45 45 H 1.09001 * 109.46848 * 49.99877 * 17 15 14 46 46 H 0.96999 * 119.99895 * 180.02562 * 21 20 18 47 47 H 1.08001 * 120.06838 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2441 2.3427 -0.0005 5 6 3.4762 1.6892 -0.0006 6 6 4.3882 0.6266 -0.0017 7 6 5.7404 0.8823 -0.0084 8 6 6.2029 2.1932 -0.0026 9 8 7.5374 2.4396 -0.0035 10 6 8.4066 1.3053 -0.0046 11 6 9.8618 1.7778 -0.0061 12 1 10.0262 2.4505 0.8355 13 8 10.1376 2.4665 -1.2275 14 6 10.7908 0.5684 0.1185 15 7 12.1806 1.0290 0.2374 16 6 12.3875 1.7596 1.4949 17 6 13.1194 -0.0950 0.1210 18 6 14.5250 0.4348 0.0008 19 1 14.7032 1.5000 0.0103 20 6 15.5836 -0.4402 -0.1213 21 7 16.8103 0.0222 -0.2257 22 14 15.2753 -2.2825 -0.1371 23 1 15.0611 -2.7366 -1.5346 24 1 16.4503 -2.9858 0.4373 25 1 14.0695 -2.5896 0.6736 26 6 5.3012 3.2545 -0.0015 27 9 5.7564 4.5264 -0.0019 28 6 3.9455 3.0086 -0.0006 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0307 -0.3926 -0.0017 35 1 6.4437 0.0628 -0.0139 36 1 8.2189 0.7047 -0.8946 37 1 8.2203 0.7041 0.8854 38 1 10.0118 1.9272 -2.0202 39 1 10.6905 -0.0595 -0.7668 40 1 10.5215 -0.0068 1.0043 41 1 13.4049 2.1494 1.5255 42 1 12.2313 1.0852 2.3368 43 1 11.6797 2.5863 1.5554 44 1 13.0432 -0.7252 1.0071 45 1 12.8754 -0.6820 -0.7644 46 1 17.5549 -0.5933 -0.3120 47 1 3.2463 3.8317 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414146351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:23 Heat of formation + Delta-G solvation = -137.426609 kcal Electronic energy + Delta-G solvation = -28450.209242 eV Core-core repulsion = 24127.420229 eV Total energy + Delta-G solvation = -4322.789012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.08541 -40.83162 -39.89692 -38.27862 -37.25333 -35.63507 -33.48500 -32.55557 -31.36785 -31.26588 -30.25156 -28.04409 -26.87095 -25.66438 -24.33526 -23.53527 -22.70044 -21.35227 -20.35283 -20.18388 -18.81915 -17.67315 -17.39473 -16.96313 -16.89117 -16.17125 -16.11778 -16.01450 -15.75631 -15.33993 -15.12804 -15.00299 -14.87937 -14.37218 -14.09060 -13.84323 -13.71652 -13.56186 -13.21065 -12.96115 -12.79277 -12.68457 -12.54004 -12.29664 -12.28662 -11.80034 -11.77556 -11.67708 -11.43905 -11.31215 -11.11493 -10.91431 -10.61442 -10.41880 -10.20928 -10.14969 -9.78338 -9.54005 -9.33433 -8.70229 -8.62526 -7.46932 -6.09793 -4.07723 0.10132 0.61080 1.85763 2.50961 3.09551 3.22189 3.29624 3.30275 3.38008 3.78093 4.06910 4.30576 4.35828 4.36114 4.39506 4.45949 4.54136 4.58968 4.64800 4.70989 4.83334 4.94066 5.02959 5.11130 5.14857 5.22676 5.30686 5.31917 5.37845 5.42178 5.45128 5.57314 5.63680 5.70937 5.72218 5.93383 6.02100 6.09383 6.15763 6.58848 6.76030 6.79271 6.89602 7.05563 7.48896 7.76891 7.77773 7.94928 8.59173 8.99756 9.50880 11.03302 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021504 B = 0.001855 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.752179 B =15091.038840 C =16128.441684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 C 0.400 3.600 4 O -0.453 6.453 5 C -0.192 4.192 6 C -0.037 4.037 7 C -0.201 4.201 8 C 0.139 3.861 9 O -0.286 6.286 10 C 0.022 3.978 11 C 0.115 3.885 12 H 0.110 0.890 13 O -0.534 6.534 14 C 0.025 3.975 15 N -0.519 5.519 16 C 0.033 3.967 17 C 0.163 3.837 18 C -0.510 4.510 19 H 0.082 0.918 20 C 0.068 3.932 21 N -0.898 5.898 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.057 3.943 27 F -0.125 7.125 28 C -0.058 4.058 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.370 0.630 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.082 0.918 42 H 0.012 0.988 43 H 0.051 0.949 44 H -0.012 1.012 45 H 0.023 0.977 46 H 0.264 0.736 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.067 -2.813 1.142 31.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.207 4.207 3 C 0.278 3.722 4 O -0.329 6.329 5 C -0.193 4.193 6 C -0.056 4.056 7 C -0.220 4.220 8 C 0.090 3.910 9 O -0.198 6.198 10 C -0.053 4.053 11 C 0.055 3.945 12 H 0.128 0.872 13 O -0.338 6.338 14 C -0.104 4.104 15 N -0.243 5.243 16 C -0.115 4.115 17 C 0.037 3.963 18 C -0.549 4.549 19 H 0.100 0.900 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.703 3.297 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.194 1.194 26 C 0.037 3.963 27 F -0.104 7.104 28 C -0.077 4.077 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.217 0.783 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.101 0.899 42 H 0.031 0.969 43 H 0.069 0.931 44 H 0.006 0.994 45 H 0.041 0.959 46 H 0.074 0.926 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -30.904 -1.340 1.148 30.954 hybrid contribution -0.035 -2.240 0.315 2.262 sum -30.939 -3.580 1.463 31.180 Atomic orbital electron populations 1.21601 0.93461 1.01967 1.03194 1.21993 0.98553 0.95412 1.04769 1.22325 0.87280 0.91432 0.71127 1.90546 1.58241 1.47755 1.36333 1.20195 0.95488 0.93016 1.10650 1.21274 0.91816 0.99097 0.93399 1.21187 0.97192 0.94933 1.08671 1.19477 0.84202 0.92984 0.94317 1.86230 1.12062 1.34957 1.86570 1.23923 0.91292 0.87624 1.02498 1.21981 0.87358 0.95329 0.89881 0.87227 1.86694 1.91278 1.41216 1.14601 1.22666 0.91656 0.95016 1.01078 1.61834 1.00497 1.27010 1.34969 1.22326 1.03135 0.96947 0.89083 1.20211 0.92749 0.88401 0.94951 1.21018 0.88027 0.95926 1.49892 0.90000 1.24906 0.95043 0.98506 0.94890 1.69889 0.98590 1.34889 1.50333 0.86868 0.77961 0.86275 0.78637 1.20137 1.21141 1.19434 1.16814 0.90783 0.78372 1.10351 1.91555 1.89385 1.35195 1.94264 1.21232 0.92891 0.98061 0.95487 0.92055 0.92039 0.91896 0.88147 0.88161 0.84014 0.83624 0.90949 0.90597 0.78296 0.90657 0.94827 0.89925 0.96930 0.93082 0.99408 0.95891 0.92603 0.83007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.20 37.16 0.34 -0.37 16 2 C -0.17 -0.71 5.02 -27.88 -0.14 -0.85 16 3 C 0.40 3.02 7.11 -30.82 -0.22 2.80 16 4 O -0.45 -4.89 15.97 5.54 0.09 -4.81 16 5 C -0.19 -1.47 5.87 -105.06 -0.62 -2.09 16 6 C -0.04 -0.22 9.46 -39.14 -0.37 -0.59 16 7 C -0.20 -1.43 9.01 -39.52 -0.36 -1.79 16 8 C 0.14 1.42 6.70 -38.92 -0.26 1.16 16 9 O -0.29 -3.40 9.95 -23.68 -0.24 -3.64 16 10 C 0.02 0.21 4.37 37.16 0.16 0.37 16 11 C 0.11 1.47 3.21 -26.73 -0.09 1.38 16 12 H 0.11 1.53 6.26 -51.93 -0.33 1.20 16 13 O -0.53 -7.85 13.25 -40.08 -0.53 -8.38 16 14 C 0.03 0.37 4.60 -3.82 -0.02 0.35 16 15 N -0.52 -10.30 4.70 -244.37 -1.15 -11.45 16 16 C 0.03 0.62 9.17 60.07 0.55 1.17 16 17 C 0.16 3.79 3.79 -4.97 -0.02 3.77 16 18 C -0.51 -14.25 9.07 -34.44 -0.31 -14.57 16 19 H 0.08 2.52 7.35 -52.48 -0.39 2.13 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 22 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 26 C 0.06 0.62 7.30 -39.37 -0.29 0.33 16 27 F -0.13 -1.63 17.10 2.25 0.04 -1.59 16 28 C -0.06 -0.54 9.56 -39.07 -0.37 -0.91 16 29 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.10 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.10 0.24 8.08 -51.93 -0.42 -0.18 16 34 H 0.14 0.35 7.03 -52.49 -0.37 -0.02 16 35 H 0.15 0.74 6.27 -52.49 -0.33 0.41 16 36 H 0.07 0.53 7.64 -51.93 -0.40 0.14 16 37 H 0.08 0.58 7.66 -51.93 -0.40 0.18 16 38 H 0.37 4.09 9.05 45.56 0.41 4.50 16 39 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 40 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.08 1.73 6.86 -51.93 -0.36 1.38 16 42 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.05 0.82 6.21 -51.93 -0.32 0.50 16 44 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 45 H 0.02 0.53 7.36 -51.93 -0.38 0.15 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.15 1.36 7.64 -52.49 -0.40 0.96 16 LS Contribution 391.56 15.07 5.90 5.90 Total: -1.00 -34.58 391.56 -8.04 -42.62 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.15 Total: -0.47 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.10 Total: -7.99 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.38 Total: -37.85 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.68 Total: -16.82 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.58 -8.04 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414146351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.811 kcal (2) G-P(sol) polarization free energy of solvation -34.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds