Wall clock time and date at job start Wed Apr 1 2020 00:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47101 * 2 1 4 4 O 1.21296 * 119.99866 * 359.97438 * 3 2 1 5 5 C 1.46858 * 119.99962 * 180.02562 * 3 2 1 6 6 C 1.40028 * 120.10737 * 0.02562 * 5 3 2 7 7 C 1.37620 * 119.92529 * 179.70179 * 6 5 3 8 8 C 1.39013 * 120.14162 * 0.54933 * 7 6 5 9 9 O 1.35707 * 119.89200 * 179.71786 * 8 7 6 10 10 C 1.42906 * 117.00308 * 359.73329 * 9 8 7 11 11 C 1.52998 * 109.47322 * 179.97438 * 10 9 8 12 12 H 1.08992 * 109.47135 * 54.99494 * 11 10 9 13 13 O 1.42897 * 109.46674 * 294.99501 * 11 10 9 14 14 C 1.53004 * 109.46799 * 174.99810 * 11 10 9 15 15 N 1.46898 * 109.46619 * 184.99872 * 14 11 10 16 16 C 1.46901 * 111.00443 * 66.04574 * 15 14 11 17 17 C 1.46906 * 110.99820 * 189.99887 * 15 14 11 18 18 C 1.50696 * 109.47351 * 169.99890 * 17 15 14 19 19 H 1.08007 * 119.99780 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00506 * 180.02562 * 18 17 15 21 21 N 1.31510 * 120.00248 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99357 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46811 * 90.00524 * 22 20 18 24 24 H 1.48502 * 109.46643 * 209.99901 * 22 20 18 25 25 H 1.48499 * 109.47300 * 329.99977 * 22 20 18 26 26 C 1.39255 * 120.21529 * 359.44836 * 8 7 6 27 27 F 1.35095 * 119.96010 * 180.29636 * 26 8 7 28 28 C 1.37785 * 120.07294 * 0.27282 * 26 8 7 29 29 H 1.09000 * 109.46659 * 300.00081 * 1 2 3 30 30 H 1.08998 * 109.46783 * 60.00205 * 1 2 3 31 31 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46659 * 239.99919 * 2 1 3 33 33 H 1.08998 * 109.46783 * 119.99795 * 2 1 3 34 34 H 1.07998 * 120.03664 * 359.97438 * 6 5 3 35 35 H 1.08000 * 119.92795 * 180.28659 * 7 6 5 36 36 H 1.08994 * 109.46880 * 59.98975 * 10 9 8 37 37 H 1.09004 * 109.46141 * 299.99768 * 10 9 8 38 38 H 0.96701 * 114.00549 * 300.00026 * 13 11 10 39 39 H 1.08994 * 109.47270 * 64.99737 * 14 11 10 40 40 H 1.08999 * 109.47017 * 304.99614 * 14 11 10 41 41 H 1.09002 * 109.47401 * 183.95136 * 16 15 14 42 42 H 1.09001 * 109.46874 * 63.95149 * 16 15 14 43 43 H 1.09004 * 109.46970 * 303.95282 * 16 15 14 44 44 H 1.08997 * 109.46995 * 289.99871 * 17 15 14 45 45 H 1.09001 * 109.46848 * 49.99877 * 17 15 14 46 46 H 0.96999 * 119.99895 * 180.02562 * 21 20 18 47 47 H 1.08001 * 120.06838 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2441 2.3427 -0.0005 5 6 3.4762 1.6892 -0.0006 6 6 4.3882 0.6266 -0.0017 7 6 5.7404 0.8823 -0.0084 8 6 6.2029 2.1932 -0.0026 9 8 7.5374 2.4396 -0.0035 10 6 8.4066 1.3053 -0.0046 11 6 9.8618 1.7778 -0.0061 12 1 10.0262 2.4505 0.8355 13 8 10.1376 2.4665 -1.2275 14 6 10.7908 0.5684 0.1185 15 7 12.1806 1.0290 0.2374 16 6 12.3875 1.7596 1.4949 17 6 13.1194 -0.0950 0.1210 18 6 14.5250 0.4348 0.0008 19 1 14.7032 1.5000 0.0103 20 6 15.5836 -0.4402 -0.1213 21 7 16.8103 0.0222 -0.2257 22 14 15.2753 -2.2825 -0.1371 23 1 15.0611 -2.7366 -1.5346 24 1 16.4503 -2.9858 0.4373 25 1 14.0695 -2.5896 0.6736 26 6 5.3012 3.2545 -0.0015 27 9 5.7564 4.5264 -0.0019 28 6 3.9455 3.0086 -0.0006 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0307 -0.3926 -0.0017 35 1 6.4437 0.0628 -0.0139 36 1 8.2189 0.7047 -0.8946 37 1 8.2203 0.7041 0.8854 38 1 10.0118 1.9272 -2.0202 39 1 10.6905 -0.0595 -0.7668 40 1 10.5215 -0.0068 1.0043 41 1 13.4049 2.1494 1.5255 42 1 12.2313 1.0852 2.3368 43 1 11.6797 2.5863 1.5554 44 1 13.0432 -0.7252 1.0071 45 1 12.8754 -0.6820 -0.7644 46 1 17.5549 -0.5933 -0.3120 47 1 3.2463 3.8317 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414146351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:23 Heat of formation + Delta-G solvation = -163.450091 kcal Electronic energy + Delta-G solvation = -28451.337705 eV Core-core repulsion = 24127.420229 eV Total energy + Delta-G solvation = -4323.917475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.94615 -41.48359 -40.58150 -39.32110 -38.11473 -36.94136 -34.60140 -33.90142 -32.22739 -31.88226 -31.16264 -29.73918 -28.02071 -26.46360 -25.50404 -24.16199 -23.56524 -22.46966 -21.82780 -20.76961 -19.55047 -18.99958 -18.33945 -18.06436 -17.74926 -17.14869 -16.87224 -16.74007 -16.59999 -16.34088 -16.07690 -15.98669 -15.91184 -15.69204 -15.24548 -15.06747 -14.63570 -14.46635 -14.22213 -13.97972 -13.85169 -13.54681 -13.42963 -13.19721 -13.12273 -12.91789 -12.73468 -12.55435 -12.42820 -12.35638 -12.24388 -12.06490 -11.97103 -11.89156 -11.62737 -11.49512 -10.92845 -10.77507 -10.76876 -10.14967 -9.38868 -8.97243 -8.26278 -6.30816 -0.50625 0.00415 1.28625 1.36596 1.39305 1.49428 1.78344 2.36357 2.51690 2.82873 3.06500 3.12027 3.22775 3.50754 3.60909 3.78879 3.84511 3.90261 3.97377 4.07298 4.08046 4.25219 4.29632 4.31332 4.33124 4.39317 4.47688 4.63863 4.67818 4.69193 4.83825 4.88798 4.91989 4.98611 5.03048 5.03395 5.05340 5.10311 5.12824 5.22925 5.37050 5.44291 5.54064 5.97863 6.13447 6.33129 6.53436 6.66783 6.76468 6.93651 7.32835 8.90733 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021504 B = 0.001855 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.752179 B =15091.038840 C =16128.441684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.164 4.164 3 C 0.400 3.600 4 O -0.498 6.498 5 C -0.198 4.198 6 C -0.015 4.015 7 C -0.192 4.192 8 C 0.125 3.875 9 O -0.317 6.317 10 C 0.028 3.972 11 C 0.118 3.882 12 H 0.091 0.909 13 O -0.564 6.564 14 C 0.027 3.973 15 N -0.544 5.544 16 C 0.039 3.961 17 C 0.173 3.827 18 C -0.520 4.520 19 H 0.030 0.970 20 C 0.002 3.998 21 N -0.952 5.952 22 Si 0.954 3.046 23 H -0.263 1.263 24 H -0.286 1.286 25 H -0.244 1.244 26 C 0.022 3.978 27 F -0.150 7.150 28 C -0.068 4.068 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.190 0.810 35 H 0.178 0.822 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.384 0.616 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.025 0.975 43 H 0.072 0.928 44 H -0.007 1.007 45 H 0.035 0.965 46 H 0.266 0.734 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.580 -7.621 1.180 34.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.201 4.201 3 C 0.281 3.719 4 O -0.377 6.377 5 C -0.199 4.199 6 C -0.033 4.033 7 C -0.210 4.210 8 C 0.077 3.923 9 O -0.230 6.230 10 C -0.047 4.047 11 C 0.058 3.942 12 H 0.109 0.891 13 O -0.370 6.370 14 C -0.101 4.101 15 N -0.268 5.268 16 C -0.109 4.109 17 C 0.046 3.954 18 C -0.559 4.559 19 H 0.049 0.951 20 C -0.195 4.195 21 N -0.592 5.592 22 Si 0.777 3.223 23 H -0.188 1.188 24 H -0.212 1.212 25 H -0.168 1.168 26 C 0.003 3.997 27 F -0.129 7.129 28 C -0.087 4.087 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.207 0.793 35 H 0.195 0.805 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.233 0.767 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.011 0.989 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -33.452 -6.149 1.184 34.033 hybrid contribution 0.704 -0.624 0.298 0.987 sum -32.748 -6.773 1.483 33.474 Atomic orbital electron populations 1.21628 0.94448 1.02802 1.01676 1.22095 0.97680 0.92920 1.07389 1.22941 0.86806 0.92759 0.69398 1.90544 1.59112 1.49436 1.38572 1.20439 0.96296 0.92754 1.10413 1.21760 0.90774 1.00491 0.90234 1.21568 0.98351 0.94032 1.07079 1.19657 0.83367 0.94026 0.95243 1.86164 1.13112 1.36521 1.87174 1.23866 0.88528 0.87131 1.05178 1.21867 0.89610 0.94107 0.88629 0.89141 1.86654 1.91730 1.42724 1.15918 1.22750 0.88384 0.96091 1.02899 1.61656 1.03168 1.26366 1.35638 1.22214 1.01402 0.97861 0.89434 1.19960 0.90732 0.89288 0.95396 1.21310 0.91294 0.93804 1.49462 0.95128 1.25960 0.94441 1.04737 0.94319 1.70075 0.99947 1.37126 1.52093 0.85619 0.78626 0.78497 0.79561 1.18778 1.21171 1.16771 1.17179 0.91764 0.77967 1.12840 1.91479 1.89721 1.36901 1.94752 1.21266 0.92212 0.99161 0.96085 0.93659 0.93652 0.89765 0.85222 0.85229 0.79271 0.80472 0.88075 0.87896 0.76677 0.88859 0.92483 0.93879 0.95611 0.90960 0.98947 0.94653 0.92502 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.20 71.98 0.66 -0.47 16 2 C -0.16 -0.69 5.02 29.85 0.15 -0.54 16 3 C 0.40 5.28 7.11 27.94 0.20 5.47 16 4 O -0.50 -10.88 15.97 -3.08 -0.05 -10.93 16 5 C -0.20 -2.60 5.87 -20.15 -0.12 -2.72 16 6 C -0.01 -0.10 9.46 22.56 0.21 0.12 16 7 C -0.19 -1.85 9.01 22.31 0.20 -1.65 16 8 C 0.12 2.33 6.70 22.70 0.15 2.48 16 9 O -0.32 -7.01 9.95 -85.64 -0.85 -7.87 16 10 C 0.03 0.42 4.37 71.98 0.31 0.74 16 11 C 0.12 2.75 3.21 30.60 0.10 2.85 16 12 H 0.09 2.43 6.26 -2.39 -0.01 2.41 16 13 O -0.56 -15.99 13.25 -144.34 -1.91 -17.90 16 14 C 0.03 0.69 4.60 86.30 0.40 1.09 16 15 N -0.54 -20.97 4.70 -927.04 -4.36 -25.33 16 16 C 0.04 1.46 9.17 127.69 1.17 2.63 16 17 C 0.17 7.78 3.79 85.55 0.32 8.11 16 18 C -0.52 -29.77 9.07 25.60 0.23 -29.54 16 19 H 0.03 2.00 7.35 -2.91 -0.02 1.98 16 20 C 0.00 0.13 5.47 84.66 0.46 0.59 16 21 N -0.95 -59.41 13.96 21.45 0.30 -59.12 16 22 Si 0.95 42.20 27.47 68.60 1.88 44.09 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 25 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 26 C 0.02 0.50 7.30 22.41 0.16 0.66 16 27 F -0.15 -4.21 17.10 44.97 0.77 -3.45 16 28 C -0.07 -1.30 9.56 22.60 0.22 -1.09 16 29 H 0.04 0.48 8.10 -2.39 -0.02 0.46 16 30 H 0.04 0.48 8.10 -2.39 -0.02 0.46 16 31 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.13 -0.13 8.08 -2.39 -0.02 -0.15 16 33 H 0.13 -0.13 8.08 -2.39 -0.02 -0.15 16 34 H 0.19 -0.54 7.03 -2.91 -0.02 -0.56 16 35 H 0.18 0.59 6.27 -2.91 -0.02 0.57 16 36 H 0.10 0.95 7.64 -2.39 -0.02 0.94 16 37 H 0.10 1.01 7.66 -2.38 -0.02 0.99 16 38 H 0.38 7.86 9.05 -74.06 -0.67 7.19 16 39 H 0.09 2.06 7.93 -2.39 -0.02 2.04 16 40 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 41 H 0.04 1.90 6.86 -2.39 -0.02 1.89 16 42 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 2.33 6.21 -2.38 -0.01 2.32 16 44 H -0.01 -0.31 7.18 -2.39 -0.02 -0.33 16 45 H 0.04 1.51 7.36 -2.39 -0.02 1.49 16 46 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 47 H 0.14 2.84 7.64 -2.91 -0.02 2.82 16 Total: -1.00 -82.57 391.56 0.89 -81.68 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.27 Total: 10.09 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.84 Total: -11.28 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -4.06 Total: -84.45 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -2.81 Total: -36.70 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.77 Total: -3.45 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.09 kcal Total: -82.57 0.89 -81.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414146351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.767 kcal (2) G-P(sol) polarization free energy of solvation -82.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds