Wall clock time and date at job start Wed Apr 1 2020 00:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47444 * 2 1 4 4 O 1.21300 * 119.99762 * 359.97438 * 3 2 1 5 5 C 1.46852 * 120.00493 * 179.97438 * 3 2 1 6 6 C 1.40028 * 120.10250 * 0.24690 * 5 3 2 7 7 C 1.37626 * 119.92328 * 180.25469 * 6 5 3 8 8 C 1.39015 * 120.14055 * 359.49529 * 7 6 5 9 9 O 1.35715 * 119.89260 * 180.23586 * 8 7 6 10 10 C 1.42897 * 116.99888 * 359.97438 * 9 8 7 11 11 C 1.53003 * 109.47271 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.46704 * 305.00279 * 11 10 9 13 13 O 1.42904 * 109.46860 * 65.00015 * 11 10 9 14 14 C 1.52994 * 109.47421 * 184.99835 * 11 10 9 15 15 N 1.46891 * 109.47298 * 179.97438 * 14 11 10 16 16 C 1.46898 * 111.00355 * 293.95382 * 15 14 11 17 17 C 1.46907 * 111.00233 * 169.99712 * 15 14 11 18 18 C 1.50694 * 109.47269 * 190.00017 * 17 15 14 19 19 H 1.07995 * 120.00242 * 0.02562 * 18 17 15 20 20 C 1.37883 * 120.00132 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99955 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99541 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47546 * 89.99931 * 22 20 18 24 24 H 1.48505 * 109.46791 * 209.99505 * 22 20 18 25 25 H 1.48505 * 109.47331 * 329.99371 * 22 20 18 26 26 C 1.39257 * 120.21618 * 0.25466 * 8 7 6 27 27 F 1.35099 * 119.95984 * 180.02562 * 26 8 7 28 28 C 1.37784 * 120.07021 * 359.97438 * 26 8 7 29 29 H 1.08999 * 109.47244 * 300.00529 * 1 2 3 30 30 H 1.09001 * 109.46700 * 60.00808 * 1 2 3 31 31 H 1.08999 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47244 * 239.99471 * 2 1 3 33 33 H 1.09007 * 109.46514 * 119.99873 * 2 1 3 34 34 H 1.07995 * 120.04204 * 0.02562 * 6 5 3 35 35 H 1.08002 * 119.93316 * 179.77707 * 7 6 5 36 36 H 1.09006 * 109.47022 * 300.00304 * 10 9 8 37 37 H 1.09003 * 109.47158 * 59.99795 * 10 9 8 38 38 H 0.96695 * 113.99872 * 59.99919 * 13 11 10 39 39 H 1.09003 * 109.47473 * 300.00406 * 14 11 10 40 40 H 1.08998 * 109.46965 * 59.99930 * 14 11 10 41 41 H 1.08998 * 109.46747 * 59.99780 * 16 15 14 42 42 H 1.08996 * 109.47345 * 179.97438 * 16 15 14 43 43 H 1.08997 * 109.46940 * 300.00025 * 16 15 14 44 44 H 1.09002 * 109.47374 * 310.00478 * 17 15 14 45 45 H 1.09004 * 109.46251 * 70.00414 * 17 15 14 46 46 H 0.97003 * 119.99705 * 179.97438 * 21 20 18 47 47 H 1.08005 * 120.06354 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 6 3.4762 1.6891 0.0006 6 6 4.3881 0.6265 -0.0041 7 6 5.7404 0.8822 0.0017 8 6 6.2029 2.1932 0.0017 9 8 7.5375 2.4396 0.0026 10 6 8.4066 1.3053 0.0042 11 6 9.8618 1.7777 0.0057 12 1 10.0263 2.4502 -0.8362 13 8 10.1375 2.4670 1.2268 14 6 10.7908 0.5685 -0.1183 15 7 12.1879 1.0221 -0.1174 16 6 12.4847 1.8153 -1.3177 17 6 13.1106 -0.1146 0.0039 18 6 14.5073 0.3958 0.2476 19 1 14.6913 1.4584 0.3070 20 6 15.5505 -0.4936 0.3948 21 7 16.7695 -0.0481 0.6071 22 14 15.2324 -2.3314 0.2915 23 1 15.3757 -2.7802 -1.1168 24 1 16.2129 -3.0521 1.1427 25 1 13.8560 -2.6231 0.7664 26 6 5.3012 3.2544 0.0011 27 9 5.7564 4.5264 0.0005 28 6 3.9455 3.0085 0.0000 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 4.0307 -0.3926 -0.0086 35 1 6.4438 0.0627 0.0018 36 1 8.2189 0.7050 0.8945 37 1 8.2204 0.7036 -0.8855 38 1 10.0117 1.9280 2.0197 39 1 10.6263 -0.1041 0.7237 40 1 10.5805 0.0427 -1.0496 41 1 11.8335 2.6889 -1.3460 42 1 13.5252 2.1388 -1.2914 43 1 12.3153 1.2069 -2.2062 44 1 12.8031 -0.7447 0.8385 45 1 13.0922 -0.6972 -0.9173 46 1 17.5034 -0.6739 0.7110 47 1 3.2463 3.8317 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414146352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:32 Heat of formation + Delta-G solvation = -137.814604 kcal Electronic energy + Delta-G solvation = -28453.993673 eV Core-core repulsion = 24131.187836 eV Total energy + Delta-G solvation = -4322.805837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.08320 -40.82854 -39.89297 -38.26939 -37.25102 -35.60632 -33.48316 -32.55041 -31.36726 -31.26396 -30.25199 -28.04677 -26.85542 -25.65716 -24.33046 -23.53349 -22.69957 -21.34259 -20.34150 -20.18073 -18.81729 -17.67191 -17.39146 -16.94637 -16.89642 -16.15717 -16.11483 -16.01262 -15.75341 -15.33823 -15.11637 -15.00950 -14.88375 -14.31206 -14.09129 -13.86935 -13.71631 -13.56334 -13.20919 -12.96109 -12.78495 -12.67187 -12.53969 -12.29657 -12.27883 -11.77903 -11.75862 -11.67534 -11.45911 -11.32893 -11.09255 -10.87743 -10.76332 -10.39201 -10.20780 -10.02248 -9.78116 -9.53799 -9.32965 -8.70021 -8.63502 -7.47928 -6.09945 -4.07785 0.10322 0.61276 1.85935 2.51289 3.09757 3.21908 3.29449 3.30371 3.38188 3.78295 4.07255 4.31176 4.35767 4.36280 4.40136 4.46721 4.54340 4.59100 4.64979 4.71992 4.83314 4.94119 5.03113 5.11478 5.16435 5.22702 5.30841 5.32086 5.38147 5.42312 5.45374 5.57546 5.63858 5.72311 5.72359 5.95215 6.02883 6.09645 6.15124 6.60743 6.74762 6.79533 6.90179 7.05718 7.49982 7.78182 7.78707 7.95699 8.59209 8.99783 9.50779 11.03163 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021303 B = 0.001859 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.082310 B =15059.207763 C =16119.588974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 C 0.400 3.600 4 O -0.453 6.453 5 C -0.192 4.192 6 C -0.037 4.037 7 C -0.201 4.201 8 C 0.139 3.861 9 O -0.286 6.286 10 C 0.022 3.978 11 C 0.116 3.884 12 H 0.108 0.892 13 O -0.533 6.533 14 C 0.025 3.975 15 N -0.518 5.518 16 C 0.033 3.967 17 C 0.163 3.837 18 C -0.510 4.510 19 H 0.082 0.918 20 C 0.068 3.932 21 N -0.898 5.898 22 Si 0.876 3.124 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.269 1.269 26 C 0.057 3.943 27 F -0.126 7.126 28 C -0.058 4.058 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.371 0.629 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.011 0.989 44 H 0.027 0.973 45 H -0.017 1.017 46 H 0.264 0.736 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.891 -2.571 -2.186 31.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.207 4.207 3 C 0.278 3.722 4 O -0.329 6.329 5 C -0.193 4.193 6 C -0.056 4.056 7 C -0.220 4.220 8 C 0.090 3.910 9 O -0.198 6.198 10 C -0.053 4.053 11 C 0.055 3.945 12 H 0.126 0.874 13 O -0.337 6.337 14 C -0.105 4.105 15 N -0.242 5.242 16 C -0.116 4.116 17 C 0.037 3.963 18 C -0.549 4.549 19 H 0.100 0.900 20 C -0.134 4.134 21 N -0.537 5.537 22 Si 0.704 3.296 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.194 1.194 26 C 0.037 3.963 27 F -0.104 7.104 28 C -0.077 4.077 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.218 0.782 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.029 0.971 44 H 0.045 0.955 45 H 0.001 0.999 46 H 0.074 0.926 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -30.756 -1.122 -2.155 30.852 hybrid contribution 0.000 -2.204 -0.448 2.249 sum -30.757 -3.326 -2.603 31.045 Atomic orbital electron populations 1.21601 0.93461 1.01967 1.03193 1.21993 0.98552 0.95411 1.04771 1.22324 0.87281 0.91432 0.71126 1.90547 1.58247 1.47751 1.36337 1.20191 0.95487 0.93017 1.10655 1.21275 0.91817 0.99096 0.93396 1.21190 0.97191 0.94935 1.08662 1.19479 0.84205 0.92982 0.94311 1.86229 1.12059 1.34959 1.86569 1.23921 0.91292 0.87623 1.02497 1.21944 0.87387 0.95230 0.89907 0.87410 1.86684 1.91284 1.41126 1.14600 1.22665 0.91742 0.95221 1.00842 1.61827 0.99727 1.23993 1.38630 1.22327 1.03241 0.96459 0.89526 1.20218 0.92977 0.88349 0.94791 1.21020 0.89067 0.95960 1.48811 0.89983 1.24909 0.95021 0.98538 0.94892 1.69891 0.99561 1.34739 1.49503 0.86857 0.78311 0.86214 0.78254 1.20380 1.21085 1.19351 1.16814 0.90783 0.78370 1.10357 1.91556 1.89386 1.35196 1.94267 1.21229 0.92892 0.98060 0.95490 0.92036 0.92058 0.91897 0.88163 0.88143 0.84014 0.83618 0.90928 0.90618 0.78217 0.90726 0.94797 0.93001 0.89840 0.97074 0.95464 0.99904 0.92604 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.20 37.16 0.34 -0.37 16 2 C -0.17 -0.71 5.02 -27.88 -0.14 -0.85 16 3 C 0.40 3.02 7.11 -30.83 -0.22 2.80 16 4 O -0.45 -4.90 15.97 5.54 0.09 -4.81 16 5 C -0.19 -1.48 5.87 -105.07 -0.62 -2.09 16 6 C -0.04 -0.22 9.46 -39.13 -0.37 -0.59 16 7 C -0.20 -1.44 9.01 -39.52 -0.36 -1.79 16 8 C 0.14 1.42 6.70 -38.91 -0.26 1.16 16 9 O -0.29 -3.40 9.95 -23.70 -0.24 -3.64 16 10 C 0.02 0.21 4.37 37.16 0.16 0.37 16 11 C 0.12 1.48 3.12 -26.73 -0.08 1.39 16 12 H 0.11 1.49 6.55 -51.93 -0.34 1.15 16 13 O -0.53 -7.88 13.17 -40.08 -0.53 -8.41 16 14 C 0.02 0.36 4.62 -3.83 -0.02 0.34 16 15 N -0.52 -10.26 4.62 -244.38 -1.13 -11.39 16 16 C 0.03 0.61 9.14 60.06 0.55 1.16 16 17 C 0.16 3.78 3.79 -4.97 -0.02 3.76 16 18 C -0.51 -14.23 9.01 -34.44 -0.31 -14.54 16 19 H 0.08 2.52 7.37 -52.49 -0.39 2.13 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 22 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 26 C 0.06 0.62 7.30 -39.37 -0.29 0.33 16 27 F -0.13 -1.63 17.10 2.25 0.04 -1.59 16 28 C -0.06 -0.54 9.56 -39.07 -0.37 -0.91 16 29 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.10 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.10 0.24 8.09 -51.93 -0.42 -0.18 16 34 H 0.14 0.35 7.03 -52.49 -0.37 -0.02 16 35 H 0.15 0.74 6.27 -52.49 -0.33 0.41 16 36 H 0.07 0.54 7.65 -51.93 -0.40 0.15 16 37 H 0.08 0.57 7.65 -51.93 -0.40 0.17 16 38 H 0.37 4.21 9.04 45.56 0.41 4.62 16 39 H 0.07 1.00 7.93 -51.93 -0.41 0.58 16 40 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.05 0.85 6.47 -51.93 -0.34 0.52 16 42 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 43 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.03 0.63 6.99 -51.93 -0.36 0.27 16 45 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.15 1.37 7.64 -52.48 -0.40 0.96 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -34.43 391.72 -8.03 -42.46 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.18 Total: -0.37 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.10 Total: -7.99 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.36 Total: -37.76 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.68 Total: -16.86 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.43 -8.03 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414146352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.354 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds