Wall clock time and date at job start Wed Apr 1 2020 00:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47444 * 2 1 4 4 O 1.21300 * 119.99762 * 359.97438 * 3 2 1 5 5 C 1.46852 * 120.00493 * 179.97438 * 3 2 1 6 6 C 1.40028 * 120.10250 * 0.24690 * 5 3 2 7 7 C 1.37626 * 119.92328 * 180.25469 * 6 5 3 8 8 C 1.39015 * 120.14055 * 359.49529 * 7 6 5 9 9 O 1.35715 * 119.89260 * 180.23586 * 8 7 6 10 10 C 1.42897 * 116.99888 * 359.97438 * 9 8 7 11 11 C 1.53003 * 109.47271 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.46704 * 305.00279 * 11 10 9 13 13 O 1.42904 * 109.46860 * 65.00015 * 11 10 9 14 14 C 1.52994 * 109.47421 * 184.99835 * 11 10 9 15 15 N 1.46891 * 109.47298 * 179.97438 * 14 11 10 16 16 C 1.46898 * 111.00355 * 293.95382 * 15 14 11 17 17 C 1.46907 * 111.00233 * 169.99712 * 15 14 11 18 18 C 1.50694 * 109.47269 * 190.00017 * 17 15 14 19 19 H 1.07995 * 120.00242 * 0.02562 * 18 17 15 20 20 C 1.37883 * 120.00132 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99955 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99541 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47546 * 89.99931 * 22 20 18 24 24 H 1.48505 * 109.46791 * 209.99505 * 22 20 18 25 25 H 1.48505 * 109.47331 * 329.99371 * 22 20 18 26 26 C 1.39257 * 120.21618 * 0.25466 * 8 7 6 27 27 F 1.35099 * 119.95984 * 180.02562 * 26 8 7 28 28 C 1.37784 * 120.07021 * 359.97438 * 26 8 7 29 29 H 1.08999 * 109.47244 * 300.00529 * 1 2 3 30 30 H 1.09001 * 109.46700 * 60.00808 * 1 2 3 31 31 H 1.08999 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47244 * 239.99471 * 2 1 3 33 33 H 1.09007 * 109.46514 * 119.99873 * 2 1 3 34 34 H 1.07995 * 120.04204 * 0.02562 * 6 5 3 35 35 H 1.08002 * 119.93316 * 179.77707 * 7 6 5 36 36 H 1.09006 * 109.47022 * 300.00304 * 10 9 8 37 37 H 1.09003 * 109.47158 * 59.99795 * 10 9 8 38 38 H 0.96695 * 113.99872 * 59.99919 * 13 11 10 39 39 H 1.09003 * 109.47473 * 300.00406 * 14 11 10 40 40 H 1.08998 * 109.46965 * 59.99930 * 14 11 10 41 41 H 1.08998 * 109.46747 * 59.99780 * 16 15 14 42 42 H 1.08996 * 109.47345 * 179.97438 * 16 15 14 43 43 H 1.08997 * 109.46940 * 300.00025 * 16 15 14 44 44 H 1.09002 * 109.47374 * 310.00478 * 17 15 14 45 45 H 1.09004 * 109.46251 * 70.00414 * 17 15 14 46 46 H 0.97003 * 119.99705 * 179.97438 * 21 20 18 47 47 H 1.08005 * 120.06354 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 6 3.4762 1.6891 0.0006 6 6 4.3881 0.6265 -0.0041 7 6 5.7404 0.8822 0.0017 8 6 6.2029 2.1932 0.0017 9 8 7.5375 2.4396 0.0026 10 6 8.4066 1.3053 0.0042 11 6 9.8618 1.7777 0.0057 12 1 10.0263 2.4502 -0.8362 13 8 10.1375 2.4670 1.2268 14 6 10.7908 0.5685 -0.1183 15 7 12.1879 1.0221 -0.1174 16 6 12.4847 1.8153 -1.3177 17 6 13.1106 -0.1146 0.0039 18 6 14.5073 0.3958 0.2476 19 1 14.6913 1.4584 0.3070 20 6 15.5505 -0.4936 0.3948 21 7 16.7695 -0.0481 0.6071 22 14 15.2324 -2.3314 0.2915 23 1 15.3757 -2.7802 -1.1168 24 1 16.2129 -3.0521 1.1427 25 1 13.8560 -2.6231 0.7664 26 6 5.3012 3.2544 0.0011 27 9 5.7564 4.5264 0.0005 28 6 3.9455 3.0085 0.0000 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 4.0307 -0.3926 -0.0086 35 1 6.4438 0.0627 0.0018 36 1 8.2189 0.7050 0.8945 37 1 8.2204 0.7036 -0.8855 38 1 10.0117 1.9280 2.0197 39 1 10.6263 -0.1041 0.7237 40 1 10.5805 0.0427 -1.0496 41 1 11.8335 2.6889 -1.3460 42 1 13.5252 2.1388 -1.2914 43 1 12.3153 1.2069 -2.2062 44 1 12.8031 -0.7447 0.8385 45 1 13.0922 -0.6972 -0.9173 46 1 17.5034 -0.6739 0.7110 47 1 3.2463 3.8317 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414146352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:31 Heat of formation + Delta-G solvation = -163.597784 kcal Electronic energy + Delta-G solvation = -28455.111715 eV Core-core repulsion = 24131.187836 eV Total energy + Delta-G solvation = -4323.923880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.94482 -41.48149 -40.57861 -39.31482 -38.11379 -36.91792 -34.59418 -33.90091 -32.22686 -31.88136 -31.16092 -29.74591 -28.00435 -26.45884 -25.50290 -24.16130 -23.56397 -22.46461 -21.81146 -20.76913 -19.55026 -18.99558 -18.33611 -18.06294 -17.73897 -17.14017 -16.85607 -16.74247 -16.62487 -16.34203 -16.03916 -15.98291 -15.91180 -15.69229 -15.24024 -15.08268 -14.62433 -14.44604 -14.22146 -13.98896 -13.84910 -13.54287 -13.40768 -13.20520 -13.12227 -12.91181 -12.73590 -12.58288 -12.50276 -12.36011 -12.23483 -12.06043 -11.96996 -11.78887 -11.60812 -11.49359 -10.91701 -10.77877 -10.77489 -10.14909 -9.38794 -8.97805 -8.26181 -6.30555 -0.50575 0.00458 1.28658 1.36521 1.39132 1.49751 1.78526 2.36464 2.51744 2.82912 3.06244 3.12461 3.22998 3.50915 3.62597 3.78855 3.84714 3.90402 3.98613 4.07420 4.08145 4.25262 4.30037 4.31356 4.33126 4.39747 4.48753 4.63459 4.68495 4.69320 4.83899 4.89361 4.92045 4.99002 5.03005 5.03282 5.05377 5.10324 5.12858 5.23216 5.37065 5.44344 5.54785 5.98217 6.13614 6.33725 6.53456 6.67039 6.76790 6.94011 7.33015 8.90855 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021303 B = 0.001859 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.082310 B =15059.207763 C =16119.588974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.164 4.164 3 C 0.400 3.600 4 O -0.498 6.498 5 C -0.198 4.198 6 C -0.015 4.015 7 C -0.192 4.192 8 C 0.125 3.875 9 O -0.317 6.317 10 C 0.028 3.972 11 C 0.118 3.882 12 H 0.090 0.910 13 O -0.563 6.563 14 C 0.027 3.973 15 N -0.542 5.542 16 C 0.039 3.961 17 C 0.173 3.827 18 C -0.520 4.520 19 H 0.031 0.969 20 C 0.002 3.998 21 N -0.952 5.952 22 Si 0.954 3.046 23 H -0.269 1.269 24 H -0.285 1.285 25 H -0.240 1.240 26 C 0.022 3.978 27 F -0.150 7.150 28 C -0.068 4.068 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.190 0.810 35 H 0.178 0.822 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.384 0.616 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.026 0.974 44 H 0.037 0.963 45 H -0.009 1.009 46 H 0.266 0.734 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.415 -7.344 -2.470 34.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.201 4.201 3 C 0.281 3.719 4 O -0.377 6.377 5 C -0.199 4.199 6 C -0.033 4.033 7 C -0.210 4.210 8 C 0.077 3.923 9 O -0.230 6.230 10 C -0.047 4.047 11 C 0.058 3.942 12 H 0.108 0.892 13 O -0.369 6.369 14 C -0.102 4.102 15 N -0.266 5.266 16 C -0.109 4.109 17 C 0.046 3.954 18 C -0.558 4.558 19 H 0.049 0.951 20 C -0.195 4.195 21 N -0.592 5.592 22 Si 0.777 3.223 23 H -0.194 1.194 24 H -0.211 1.211 25 H -0.163 1.163 26 C 0.003 3.997 27 F -0.129 7.129 28 C -0.087 4.087 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.207 0.793 35 H 0.195 0.805 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.233 0.767 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.008 0.992 46 H 0.075 0.925 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -33.316 -5.895 -2.440 33.921 hybrid contribution 0.744 -0.600 -0.355 1.020 sum -32.571 -6.495 -2.794 33.330 Atomic orbital electron populations 1.21628 0.94445 1.02801 1.01676 1.22095 0.97681 0.92921 1.07390 1.22939 0.86807 0.92758 0.69397 1.90545 1.59116 1.49432 1.38575 1.20435 0.96295 0.92755 1.10417 1.21761 0.90774 1.00490 0.90235 1.21571 0.98350 0.94035 1.07078 1.19660 0.83373 0.94023 0.95236 1.86164 1.13106 1.36517 1.87172 1.23865 0.88551 0.87133 1.05156 1.21846 0.89617 0.94047 0.88644 0.89170 1.86645 1.91742 1.42618 1.15908 1.22746 0.88401 0.96298 1.02722 1.61652 1.02309 1.23275 1.39392 1.22206 1.01222 0.97434 0.90055 1.19965 0.90940 0.89326 0.95169 1.21310 0.92269 0.93823 1.48411 0.95107 1.25959 0.94438 1.04719 0.94350 1.70077 1.00942 1.36930 1.51295 0.85624 0.79523 0.78498 0.78681 1.19382 1.21055 1.16303 1.17179 0.91762 0.77965 1.12841 1.91480 1.89721 1.36898 1.94753 1.21264 0.92214 0.99160 0.96086 0.93656 0.93652 0.89766 0.85215 0.85237 0.79275 0.80478 0.88172 0.87840 0.76726 0.88898 0.92525 0.91205 0.93812 0.95515 0.94467 0.99166 0.92511 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.20 71.98 0.66 -0.47 16 2 C -0.16 -0.70 5.02 29.85 0.15 -0.55 16 3 C 0.40 5.29 7.11 27.94 0.20 5.49 16 4 O -0.50 -10.89 15.97 -3.09 -0.05 -10.94 16 5 C -0.20 -2.61 5.87 -20.15 -0.12 -2.73 16 6 C -0.01 -0.10 9.46 22.56 0.21 0.11 16 7 C -0.19 -1.87 9.01 22.31 0.20 -1.66 16 8 C 0.12 2.34 6.70 22.70 0.15 2.49 16 9 O -0.32 -7.02 9.95 -85.72 -0.85 -7.87 16 10 C 0.03 0.42 4.37 71.98 0.31 0.74 16 11 C 0.12 2.76 3.12 30.59 0.10 2.85 16 12 H 0.09 2.39 6.55 -2.39 -0.02 2.37 16 13 O -0.56 -16.11 13.17 -144.34 -1.90 -18.01 16 14 C 0.03 0.68 4.62 86.30 0.40 1.08 16 15 N -0.54 -20.83 4.62 -927.08 -4.28 -25.11 16 16 C 0.04 1.46 9.14 127.69 1.17 2.63 16 17 C 0.17 7.75 3.79 85.55 0.32 8.08 16 18 C -0.52 -29.67 9.01 25.60 0.23 -29.44 16 19 H 0.03 2.01 7.37 -2.91 -0.02 1.99 16 20 C 0.00 0.12 5.47 84.66 0.46 0.58 16 21 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 22 Si 0.95 42.16 27.47 68.60 1.88 44.05 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 26 C 0.02 0.50 7.30 22.41 0.16 0.66 16 27 F -0.15 -4.21 17.10 44.97 0.77 -3.45 16 28 C -0.07 -1.31 9.56 22.60 0.22 -1.09 16 29 H 0.04 0.49 8.10 -2.39 -0.02 0.47 16 30 H 0.04 0.48 8.10 -2.39 -0.02 0.46 16 31 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.13 -0.13 8.08 -2.39 -0.02 -0.15 16 33 H 0.13 -0.12 8.09 -2.38 -0.02 -0.14 16 34 H 0.19 -0.52 7.03 -2.91 -0.02 -0.55 16 35 H 0.18 0.60 6.27 -2.91 -0.02 0.58 16 36 H 0.10 0.97 7.65 -2.38 -0.02 0.95 16 37 H 0.10 1.00 7.65 -2.39 -0.02 0.98 16 38 H 0.38 8.14 9.04 -74.06 -0.67 7.47 16 39 H 0.09 2.05 7.93 -2.39 -0.02 2.03 16 40 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 41 H 0.07 2.31 6.47 -2.39 -0.02 2.29 16 42 H 0.04 1.94 6.76 -2.39 -0.02 1.93 16 43 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.04 1.60 6.99 -2.39 -0.02 1.58 16 45 H -0.01 -0.40 7.55 -2.38 -0.02 -0.42 16 46 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 47 H 0.14 2.85 7.64 -2.91 -0.02 2.82 16 Total: -1.00 -82.17 391.72 0.97 -81.20 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.27 Total: 10.43 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 4.83 Total: -11.23 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -3.98 Total: -84.19 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -2.80 Total: -36.82 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.77 Total: -3.45 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.05 kcal Total: -82.17 0.97 -81.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414146352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.393 kcal (2) G-P(sol) polarization free energy of solvation -82.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds