Wall clock time and date at job start Tue Mar 31 2020 22:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 C 1.53001 * 109.47028 * 239.99902 * 2 1 3 5 5 O 1.45200 * 109.47129 * 120.00222 * 2 1 3 6 6 C 1.34637 * 117.00449 * 59.99561 * 5 2 1 7 7 O 1.21509 * 119.99535 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00042 * 180.02562 * 6 5 2 9 9 C 1.47070 * 136.06037 * 359.62367 * 8 6 5 10 10 C 1.53503 * 87.98250 * 153.14238 * 9 8 6 11 11 O 1.42898 * 114.38076 * 139.67283 * 10 9 8 12 12 C 1.42900 * 114.00301 * 116.31509 * 11 10 9 13 13 C 1.50692 * 109.47308 * 179.97438 * 12 11 10 14 14 O 1.21292 * 120.00276 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00075 * 180.02562 * 13 12 11 16 16 C 1.37101 * 120.00126 * 179.97438 * 15 13 12 17 17 H 1.07993 * 119.99890 * 18.11478 * 16 15 13 18 18 C 1.38952 * 119.99848 * 198.11780 * 16 15 13 19 19 N 1.31408 * 119.99913 * 18.72439 * 18 16 15 20 20 Si 1.86798 * 119.99987 * 198.72574 * 18 16 15 21 21 H 1.48502 * 109.47036 * 85.58135 * 20 18 16 22 22 H 1.48497 * 109.47452 * 205.58745 * 20 18 16 23 23 H 1.48508 * 109.46799 * 325.58796 * 20 18 16 24 24 C 1.46503 * 119.99913 * 359.97438 * 15 13 12 25 25 C 1.47201 * 109.47065 * 84.20796 * 24 15 13 26 26 N 9.72506 * 112.53410 * 181.30208 * 5 1 2 27 27 C 1.47070 * 136.05362 * 180.02562 * 8 6 5 28 28 H 1.08997 * 109.47130 * 299.99889 * 1 2 3 29 29 H 1.09000 * 109.46937 * 60.00383 * 1 2 3 30 30 H 1.09000 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46709 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46957 * 299.99605 * 3 2 1 33 33 H 1.08997 * 109.47082 * 60.00082 * 3 2 1 34 34 H 1.09001 * 109.47092 * 299.99575 * 4 2 1 35 35 H 1.08991 * 109.47270 * 60.00065 * 4 2 1 36 36 H 1.09007 * 109.46931 * 180.02562 * 4 2 1 37 37 H 1.08993 * 113.46585 * 267.92467 * 9 8 6 38 38 H 1.09000 * 113.46442 * 38.36474 * 9 8 6 39 39 H 1.08994 * 114.20817 * 272.48104 * 10 9 8 40 40 H 1.08999 * 109.46984 * 300.00070 * 12 11 10 41 41 H 1.08997 * 109.46938 * 59.99335 * 12 11 10 42 42 H 0.97002 * 120.00008 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.47138 * 204.20979 * 24 15 13 44 44 H 1.08998 * 109.46734 * 324.21055 * 24 15 13 45 45 H 1.09001 * 113.46860 * 321.63665 * 27 8 6 46 46 H 1.09002 * 113.47203 * 92.02194 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6654 2.4172 9 6 2.8969 -2.3878 3.5994 10 6 2.1088 -3.4765 4.3409 11 8 2.9054 -4.3098 5.1853 12 6 2.5805 -4.2107 6.5734 13 6 3.4767 -5.1270 7.3657 14 8 4.3114 -5.7993 6.7977 15 7 3.3503 -5.2004 8.7056 16 6 4.1653 -6.0345 9.4264 17 1 5.0812 -6.4043 8.9899 18 6 3.8128 -6.4040 10.7187 19 7 2.5687 -6.2766 11.1223 20 14 5.1074 -7.0819 11.8823 21 1 5.8022 -5.9574 12.5590 22 1 4.4554 -7.9451 12.8996 23 1 6.0940 -7.8821 11.1130 24 6 2.3418 -4.3889 9.3917 25 6 1.0450 -5.0844 9.3559 26 7 0.0481 -5.6227 9.3297 27 6 1.8955 -4.0343 2.9267 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 3.9493 -2.6335 3.4585 38 1 2.7479 -1.3888 4.0093 39 1 1.1986 -3.1196 4.8228 40 1 2.7240 -3.1832 6.9076 41 1 1.5406 -4.5000 6.7246 42 1 2.3227 -6.5342 12.0246 43 1 2.6429 -4.2347 10.4278 44 1 2.2506 -3.4243 8.8924 45 1 0.8951 -4.4355 2.7645 46 1 2.6810 -4.7186 2.6060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493175429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:54 Heat of formation + Delta-G solvation = -66.507789 kcal Electronic energy + Delta-G solvation = -29221.973890 eV Core-core repulsion = 24922.180111 eV Total energy + Delta-G solvation = -4299.793780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.09164 -39.81797 -38.89822 -37.07415 -36.25788 -35.67780 -34.40143 -34.25472 -31.96666 -29.64974 -27.91908 -27.71441 -27.66499 -27.22566 -26.29712 -24.40755 -22.95167 -21.12189 -19.69610 -19.37527 -18.10716 -17.99840 -17.27445 -16.92658 -16.62548 -16.31669 -16.05117 -15.69498 -15.19468 -14.94706 -14.64418 -14.32991 -14.27679 -13.75815 -13.59242 -13.53047 -13.11963 -13.09646 -12.79985 -12.68169 -12.54774 -12.40398 -12.19266 -12.18731 -12.05355 -11.77771 -11.70824 -11.56640 -11.49447 -11.38303 -11.24569 -11.11260 -10.65940 -10.62924 -10.45323 -10.40899 -10.26991 -9.51322 -9.33559 -9.04399 -8.64416 -8.13087 -6.56275 -4.08333 1.69047 2.63230 3.06409 3.16576 3.21314 3.34886 3.50837 3.60319 3.81646 3.90260 4.09033 4.14018 4.41134 4.45660 4.59427 4.62354 4.72293 4.82786 4.96227 5.04779 5.11358 5.15889 5.23181 5.25336 5.32420 5.38040 5.38712 5.42430 5.45555 5.45843 5.55625 5.57764 5.65837 5.68810 5.70779 5.99645 5.99838 6.03394 6.25558 6.45443 7.08887 7.41115 7.46480 7.82109 8.11487 8.21008 8.64939 8.92266 9.10162 9.62968 10.49633 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026221 B = 0.001977 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.589628 B =14157.690478 C =14489.069525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.686 3.314 7 O -0.567 6.567 8 N -0.633 5.633 9 C 0.087 3.913 10 C 0.049 3.951 11 O -0.334 6.334 12 C 0.047 3.953 13 C 0.457 3.543 14 O -0.551 6.551 15 N -0.442 5.442 16 C -0.310 4.310 17 H 0.110 0.890 18 C 0.031 3.969 19 N -0.881 5.881 20 Si 0.932 3.068 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.269 1.269 24 C 0.219 3.781 25 C 0.243 3.757 26 N -0.470 5.470 27 C 0.128 3.872 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.274 0.726 43 H 0.133 0.867 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 16.644 -14.928 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.443 3.557 7 O -0.456 6.456 8 N -0.377 5.377 9 C -0.037 4.037 10 C -0.011 4.011 11 O -0.250 6.250 12 C -0.033 4.033 13 C 0.244 3.756 14 O -0.432 6.432 15 N -0.164 5.164 16 C -0.437 4.437 17 H 0.128 0.872 18 C -0.172 4.172 19 N -0.520 5.520 20 Si 0.759 3.241 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.193 1.193 24 C 0.091 3.909 25 C -0.075 4.075 26 N -0.150 5.150 27 C 0.007 3.993 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.150 0.850 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.023 15.357 -15.657 22.139 hybrid contribution 0.589 -0.019 0.844 1.030 sum -2.435 15.339 -14.813 21.462 Atomic orbital electron populations 1.22524 0.93945 1.05108 1.02508 1.22104 0.94438 0.91543 0.82085 1.21857 1.02318 0.92409 1.03137 1.22520 1.01629 1.03505 0.96440 1.86317 1.71370 1.23394 1.46421 1.17071 0.78620 0.80294 0.79716 1.90907 1.41876 1.70735 1.42092 1.47669 1.53468 1.14904 1.21687 1.23652 0.97166 1.00546 0.82295 1.23817 0.94933 0.91821 0.90500 1.88078 1.57753 1.63186 1.15991 1.22465 0.99097 0.99862 0.81886 1.19704 0.87387 0.86220 0.82263 1.90588 1.37514 1.46342 1.68721 1.43577 1.30919 1.38215 1.03725 1.19740 1.02739 1.25860 0.95332 0.87235 1.25306 0.96562 0.96816 0.98562 1.69811 1.15410 1.47178 1.19649 0.85832 0.80147 0.78779 0.79383 1.20036 1.21087 1.19340 1.18807 0.79675 0.89910 1.02492 1.29211 0.93718 0.93206 0.91363 1.80798 1.14771 1.08776 1.10625 1.23223 1.03803 0.82997 0.89283 0.92106 0.91110 0.89388 0.91420 0.90093 0.91416 0.89410 0.91088 0.92121 0.88298 0.89707 0.87522 0.90883 0.91214 0.91503 0.84963 0.90028 0.89343 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 2 C 0.13 1.27 1.13 -90.62 -0.10 1.16 16 3 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 4 C -0.18 -1.68 8.37 37.16 0.31 -1.37 16 5 O -0.36 -4.29 9.91 -40.32 -0.40 -4.69 16 6 C 0.69 9.22 8.26 54.05 0.45 9.67 16 7 O -0.57 -8.64 12.66 -19.28 -0.24 -8.88 16 8 N -0.63 -7.71 3.69 -191.07 -0.70 -8.42 16 9 C 0.09 0.90 8.50 -8.49 -0.07 0.83 16 10 C 0.05 0.56 4.66 -26.21 -0.12 0.44 16 11 O -0.33 -5.23 9.93 -55.14 -0.55 -5.78 16 12 C 0.05 0.74 4.86 36.00 0.18 0.92 16 13 C 0.46 9.90 7.64 -10.99 -0.08 9.82 16 14 O -0.55 -14.29 16.15 -14.36 -0.23 -14.52 16 15 N -0.44 -9.75 2.60 -117.94 -0.31 -10.05 16 16 C -0.31 -7.65 9.33 -14.93 -0.14 -7.79 16 17 H 0.11 2.88 7.37 -52.49 -0.39 2.49 16 18 C 0.03 0.73 4.94 -17.47 -0.09 0.65 16 19 N -0.88 -21.33 9.33 55.50 0.52 -20.81 16 20 Si 0.93 19.06 29.59 -169.99 -5.03 14.03 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 24 C 0.22 3.98 4.91 -6.83 -0.03 3.95 16 25 C 0.24 5.04 12.94 -20.85 -0.27 4.77 16 26 N -0.47 -10.61 18.52 42.05 0.78 -9.83 16 27 C 0.13 1.48 8.46 -8.49 -0.07 1.41 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 1.02 5.88 -51.93 -0.31 0.72 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.02 7.88 -51.93 -0.41 0.61 16 40 H 0.07 0.88 7.42 -51.93 -0.39 0.50 16 41 H 0.07 1.05 7.51 -51.93 -0.39 0.66 16 42 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 43 H 0.13 2.49 6.40 -51.93 -0.33 2.16 16 44 H 0.08 1.06 6.68 -51.93 -0.35 0.71 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -32.77 387.83 -6.38 -39.15 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.65 Total: 1.46 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 0.59 Total: 22.50 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.28 Total: -49.12 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.42 Total: -33.87 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.77 -6.38 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493175429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.355 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds