Wall clock time and date at job start Tue Mar 31 2020 22:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 C 1.53001 * 109.47028 * 239.99902 * 2 1 3 5 5 O 1.45200 * 109.47129 * 120.00222 * 2 1 3 6 6 C 1.34637 * 117.00449 * 59.99561 * 5 2 1 7 7 O 1.21509 * 119.99535 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00042 * 180.02562 * 6 5 2 9 9 C 1.47070 * 136.06037 * 359.62367 * 8 6 5 10 10 C 1.53503 * 87.98250 * 153.14238 * 9 8 6 11 11 O 1.42898 * 114.38076 * 139.67283 * 10 9 8 12 12 C 1.42900 * 114.00301 * 116.31509 * 11 10 9 13 13 C 1.50692 * 109.47308 * 179.97438 * 12 11 10 14 14 O 1.21292 * 120.00276 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00075 * 180.02562 * 13 12 11 16 16 C 1.37101 * 120.00126 * 179.97438 * 15 13 12 17 17 H 1.07993 * 119.99890 * 18.11478 * 16 15 13 18 18 C 1.38952 * 119.99848 * 198.11780 * 16 15 13 19 19 N 1.31408 * 119.99913 * 18.72439 * 18 16 15 20 20 Si 1.86798 * 119.99987 * 198.72574 * 18 16 15 21 21 H 1.48502 * 109.47036 * 85.58135 * 20 18 16 22 22 H 1.48497 * 109.47452 * 205.58745 * 20 18 16 23 23 H 1.48508 * 109.46799 * 325.58796 * 20 18 16 24 24 C 1.46503 * 119.99913 * 359.97438 * 15 13 12 25 25 C 1.47201 * 109.47065 * 84.20796 * 24 15 13 26 26 N 9.72506 * 112.53410 * 181.30208 * 5 1 2 27 27 C 1.47070 * 136.05362 * 180.02562 * 8 6 5 28 28 H 1.08997 * 109.47130 * 299.99889 * 1 2 3 29 29 H 1.09000 * 109.46937 * 60.00383 * 1 2 3 30 30 H 1.09000 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46709 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46957 * 299.99605 * 3 2 1 33 33 H 1.08997 * 109.47082 * 60.00082 * 3 2 1 34 34 H 1.09001 * 109.47092 * 299.99575 * 4 2 1 35 35 H 1.08991 * 109.47270 * 60.00065 * 4 2 1 36 36 H 1.09007 * 109.46931 * 180.02562 * 4 2 1 37 37 H 1.08993 * 113.46585 * 267.92467 * 9 8 6 38 38 H 1.09000 * 113.46442 * 38.36474 * 9 8 6 39 39 H 1.08994 * 114.20817 * 272.48104 * 10 9 8 40 40 H 1.08999 * 109.46984 * 300.00070 * 12 11 10 41 41 H 1.08997 * 109.46938 * 59.99335 * 12 11 10 42 42 H 0.97002 * 120.00008 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.47138 * 204.20979 * 24 15 13 44 44 H 1.08998 * 109.46734 * 324.21055 * 24 15 13 45 45 H 1.09001 * 113.46860 * 321.63665 * 27 8 6 46 46 H 1.09002 * 113.47203 * 92.02194 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6654 2.4172 9 6 2.8969 -2.3878 3.5994 10 6 2.1088 -3.4765 4.3409 11 8 2.9054 -4.3098 5.1853 12 6 2.5805 -4.2107 6.5734 13 6 3.4767 -5.1270 7.3657 14 8 4.3114 -5.7993 6.7977 15 7 3.3503 -5.2004 8.7056 16 6 4.1653 -6.0345 9.4264 17 1 5.0812 -6.4043 8.9899 18 6 3.8128 -6.4040 10.7187 19 7 2.5687 -6.2766 11.1223 20 14 5.1074 -7.0819 11.8823 21 1 5.8022 -5.9574 12.5590 22 1 4.4554 -7.9451 12.8996 23 1 6.0940 -7.8821 11.1130 24 6 2.3418 -4.3889 9.3917 25 6 1.0450 -5.0844 9.3559 26 7 0.0481 -5.6227 9.3297 27 6 1.8955 -4.0343 2.9267 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 3.9493 -2.6335 3.4585 38 1 2.7479 -1.3888 4.0093 39 1 1.1986 -3.1196 4.8228 40 1 2.7240 -3.1832 6.9076 41 1 1.5406 -4.5000 6.7246 42 1 2.3227 -6.5342 12.0246 43 1 2.6429 -4.2347 10.4278 44 1 2.2506 -3.4243 8.8924 45 1 0.8951 -4.4355 2.7645 46 1 2.6810 -4.7186 2.6060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493175429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:54 Heat of formation + Delta-G solvation = -87.493401 kcal Electronic energy + Delta-G solvation = -29222.883895 eV Core-core repulsion = 24922.180111 eV Total energy + Delta-G solvation = -4300.703784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01288 -40.88760 -40.35237 -38.13919 -37.60093 -37.09410 -36.12762 -35.03559 -33.76010 -30.69257 -29.40309 -28.66200 -28.36892 -28.29294 -27.16065 -26.07978 -23.86522 -21.97111 -21.22245 -20.31186 -19.75946 -18.98645 -18.39486 -18.17844 -17.78283 -17.73277 -17.09276 -16.74155 -16.60691 -16.11893 -15.93756 -15.44426 -15.33696 -14.96746 -14.73122 -14.70427 -14.56536 -14.20387 -13.89985 -13.78717 -13.55114 -13.34069 -13.33302 -13.16542 -13.07515 -12.92093 -12.88270 -12.87220 -12.67374 -12.43847 -12.34354 -12.30376 -12.17089 -12.13120 -12.05828 -11.41852 -11.19587 -11.10343 -10.55352 -10.37354 -9.97287 -9.91653 -8.38211 -5.96013 0.80265 1.42216 1.50582 1.59077 1.64242 1.80723 2.02551 2.29721 2.34009 2.51338 2.76357 3.02746 3.21965 3.36723 3.62269 3.73972 3.78930 3.80373 3.90384 3.94361 4.13435 4.20252 4.23940 4.39969 4.43603 4.52677 4.59066 4.61650 4.63078 4.68194 4.76551 4.78692 4.82766 4.88002 4.88244 4.98389 5.13243 5.27697 5.32471 5.43881 5.50631 5.92281 6.17017 6.44381 6.53133 7.03952 7.14173 7.14802 7.35113 7.91959 8.64735 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026221 B = 0.001977 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.589628 B =14157.690478 C =14489.069525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.364 6.364 6 C 0.681 3.319 7 O -0.592 6.592 8 N -0.637 5.637 9 C 0.093 3.907 10 C 0.055 3.945 11 O -0.362 6.362 12 C 0.058 3.942 13 C 0.447 3.553 14 O -0.607 6.607 15 N -0.453 5.453 16 C -0.336 4.336 17 H 0.081 0.919 18 C 0.006 3.994 19 N -0.894 5.894 20 Si 0.987 3.013 21 H -0.258 1.258 22 H -0.287 1.287 23 H -0.281 1.281 24 C 0.218 3.782 25 C 0.257 3.743 26 N -0.508 5.508 27 C 0.121 3.879 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.275 0.725 43 H 0.128 0.872 44 H 0.146 0.854 45 H 0.091 0.909 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 19.452 -14.809 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.237 4.237 5 O -0.278 6.278 6 C 0.438 3.562 7 O -0.484 6.484 8 N -0.381 5.381 9 C -0.029 4.029 10 C -0.004 4.004 11 O -0.279 6.279 12 C -0.022 4.022 13 C 0.237 3.763 14 O -0.491 6.491 15 N -0.175 5.175 16 C -0.463 4.463 17 H 0.099 0.901 18 C -0.196 4.196 19 N -0.533 5.533 20 Si 0.812 3.188 21 H -0.182 1.182 22 H -0.213 1.213 23 H -0.206 1.206 24 C 0.092 3.908 25 C -0.061 4.061 26 N -0.189 5.189 27 C 0.000 4.000 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.146 0.854 44 H 0.163 0.837 45 H 0.110 0.890 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.372 18.206 -15.518 24.159 hybrid contribution 0.696 -0.909 0.725 1.354 sum -2.676 17.298 -14.794 22.918 Atomic orbital electron populations 1.22474 0.93788 1.03566 1.03808 1.22507 0.94798 0.92807 0.81295 1.21883 1.02405 0.90332 1.04505 1.22480 1.01597 1.02081 0.97581 1.86328 1.71372 1.22524 1.47599 1.17257 0.78482 0.80786 0.79685 1.90898 1.43024 1.71381 1.43048 1.47748 1.53469 1.15043 1.21807 1.23679 0.96650 1.01434 0.81184 1.23953 0.95538 0.91352 0.89575 1.88045 1.59005 1.64666 1.16176 1.22372 0.97564 1.00675 0.81545 1.20774 0.87042 0.86190 0.82329 1.90552 1.39967 1.48699 1.69853 1.43744 1.31207 1.38225 1.04285 1.19594 1.02946 1.27471 0.96285 0.90073 1.25860 0.97975 0.96731 0.99078 1.69894 1.16186 1.47460 1.19759 0.85018 0.77946 0.78414 0.77405 1.18242 1.21297 1.20600 1.19201 0.77340 0.91369 1.02908 1.29696 0.93801 0.92413 0.90159 1.80808 1.16226 1.09854 1.11996 1.23283 1.03834 0.83051 0.89842 0.91759 0.88846 0.92247 0.91296 0.87715 0.91044 0.92321 0.88743 0.92075 0.88586 0.87325 0.84936 0.85948 0.90040 0.91534 0.85432 0.83698 0.89027 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 8.37 71.98 0.60 -2.41 16 2 C 0.12 2.11 1.13 -10.79 -0.01 2.10 16 3 C -0.13 -1.41 8.85 71.98 0.64 -0.78 16 4 C -0.18 -3.13 8.37 71.98 0.60 -2.53 16 5 O -0.36 -8.25 9.91 -55.46 -0.55 -8.80 16 6 C 0.68 18.02 8.26 129.79 1.07 19.09 16 7 O -0.59 -18.38 12.66 19.81 0.25 -18.13 16 8 N -0.64 -14.86 3.69 -989.32 -3.65 -18.51 16 9 C 0.09 1.73 8.50 83.19 0.71 2.43 16 10 C 0.06 1.12 4.66 30.94 0.14 1.27 16 11 O -0.36 -10.70 9.93 -129.94 -1.29 -11.99 16 12 C 0.06 1.66 4.86 71.23 0.35 2.00 16 13 C 0.45 19.05 7.64 87.65 0.67 19.72 16 14 O -0.61 -32.14 16.15 15.97 0.26 -31.88 16 15 N -0.45 -19.60 2.60 -645.43 -1.68 -21.28 16 16 C -0.34 -16.75 9.33 84.04 0.78 -15.96 16 17 H 0.08 4.44 7.37 -2.91 -0.02 4.42 16 18 C 0.01 0.26 4.94 84.93 0.42 0.68 16 19 N -0.89 -42.66 9.33 21.66 0.20 -42.46 16 20 Si 0.99 38.95 29.59 68.60 2.03 40.98 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 22 H -0.29 -11.36 7.11 99.48 0.71 -10.66 16 23 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 24 C 0.22 7.39 4.91 84.57 0.42 7.81 16 25 C 0.26 10.18 12.94 89.47 1.16 11.34 16 26 N -0.51 -22.41 18.52 19.97 0.37 -22.04 16 27 C 0.12 2.72 8.46 83.19 0.70 3.43 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.37 5.88 -2.39 -0.01 1.35 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 39 H 0.13 2.04 7.88 -2.39 -0.02 2.02 16 40 H 0.12 2.30 7.42 -2.39 -0.02 2.28 16 41 H 0.08 2.18 7.51 -2.39 -0.02 2.16 16 42 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16 43 H 0.13 4.53 6.40 -2.39 -0.02 4.52 16 44 H 0.15 3.04 6.68 -2.39 -0.02 3.02 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -74.55 387.83 5.19 -69.35 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 1.00 Total: 16.57 kcal Atomic # 6 Polarization: 39.94 SS G_CDS: 8.25 Total: 48.19 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -4.76 Total: -104.28 kcal Atomic # 8 Polarization: -69.48 SS G_CDS: -1.33 Total: -70.81 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -74.55 5.19 -69.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493175429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.139 kcal (2) G-P(sol) polarization free energy of solvation -74.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds