Wall clock time and date at job start Tue Mar 31 2020 22:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21513 * 119.99898 * 180.02562 * 3 2 1 5 5 O 1.34638 * 119.99834 * 0.28187 * 3 2 1 6 6 C 1.45201 * 116.99819 * 179.72501 * 5 3 2 7 7 C 1.52997 * 109.47346 * 59.99666 * 6 5 3 8 8 C 1.53000 * 109.47187 * 179.97438 * 6 5 3 9 9 C 1.52997 * 109.46698 * 299.99554 * 6 5 3 10 10 C 1.46499 * 119.99928 * 180.02562 * 2 1 3 11 11 H 1.09005 * 109.47049 * 179.97438 * 10 2 1 12 12 C 1.50700 * 109.46883 * 299.99504 * 10 2 1 13 13 O 1.21204 * 120.00039 * 0.02562 * 12 10 2 14 14 O 1.34316 * 119.99797 * 180.02562 * 12 10 2 15 15 C 1.34916 * 116.99942 * 179.97438 * 14 12 10 16 16 H 1.08000 * 120.00186 * 0.02562 * 15 14 12 17 17 C 1.38755 * 119.99966 * 179.97438 * 15 14 12 18 18 N 1.31440 * 120.00226 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99949 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47340 * 89.99412 * 19 17 15 21 21 H 1.48502 * 109.46863 * 209.99422 * 19 17 15 22 22 H 1.48497 * 109.46970 * 329.99021 * 19 17 15 23 23 C 1.50696 * 109.47447 * 60.00015 * 10 2 1 24 24 C 1.39868 * 126.03610 * 320.02104 * 23 10 2 25 25 N 1.30845 * 108.20396 * 179.97438 * 24 23 10 26 26 N 1.40084 * 108.20141 * 0.02562 * 25 24 23 27 27 C 1.46499 * 126.03529 * 180.02562 * 26 25 24 28 28 C 1.34956 * 107.92711 * 359.75125 * 26 25 24 29 29 H 1.08998 * 109.46909 * 89.99792 * 1 2 3 30 30 H 1.09002 * 109.46502 * 209.99326 * 1 2 3 31 31 H 1.09001 * 109.46919 * 329.99475 * 1 2 3 32 32 H 1.08997 * 109.47392 * 59.99802 * 7 6 5 33 33 H 1.08999 * 109.47056 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47175 * 299.99773 * 7 6 5 35 35 H 1.08997 * 109.47042 * 59.99813 * 8 6 5 36 36 H 1.08999 * 109.47303 * 179.97438 * 8 6 5 37 37 H 1.09003 * 109.46990 * 300.00104 * 8 6 5 38 38 H 1.08999 * 109.47400 * 60.00485 * 9 6 5 39 39 H 1.09013 * 109.46945 * 180.02562 * 9 6 5 40 40 H 1.08997 * 109.47343 * 300.00072 * 9 6 5 41 41 H 0.96999 * 120.00565 * 180.02562 * 18 17 15 42 42 H 1.08001 * 125.90504 * 359.96136 * 24 23 10 43 43 H 1.08996 * 109.47783 * 89.97115 * 27 26 25 44 44 H 1.09006 * 109.47006 * 209.96531 * 27 26 25 45 45 H 1.08997 * 109.47127 * 329.96569 * 27 26 25 46 46 H 1.07991 * 126.12532 * 180.24526 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3540 1.1672 -0.0005 5 8 1.4657 2.3332 0.0057 6 6 2.2565 3.5509 0.0116 7 6 3.1391 3.5919 -1.2375 8 6 1.3245 4.7643 0.0169 9 6 3.1391 3.5797 1.2609 10 6 2.1975 -1.2687 -0.0006 11 1 3.2692 -1.0695 -0.0009 12 6 1.8335 -2.0594 1.2296 13 8 1.0405 -1.6081 2.0274 14 8 2.3879 -3.2643 1.4419 15 6 2.0194 -3.9192 2.5624 16 1 1.3081 -3.4713 3.2405 17 6 2.5534 -5.1688 2.8430 18 7 2.1940 -5.8071 3.9343 19 14 3.7830 -5.9439 1.6697 20 1 5.1589 -5.5432 2.0589 21 1 3.6619 -7.4227 1.7316 22 1 3.5057 -5.4821 0.2859 23 6 1.8335 -2.0584 -1.2313 24 6 0.5561 -2.1690 -1.7901 25 7 0.6374 -2.9349 -2.8478 26 7 1.9712 -3.3370 -2.9953 27 6 2.4985 -4.2021 -4.0535 28 6 2.6856 -2.7817 -1.9940 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 2.5103 3.5713 -2.1276 33 1 3.7330 4.5059 -1.2328 34 1 3.8031 2.7276 -1.2417 35 1 0.6954 4.7353 0.9066 36 1 1.9181 5.6784 0.0218 37 1 0.6959 4.7435 -0.8734 38 1 3.8032 2.7154 1.2567 39 1 3.7325 4.4942 1.2656 40 1 2.5104 3.5505 2.1508 41 1 2.5675 -6.6805 4.1307 42 1 -0.3424 -1.7028 -1.4135 43 1 2.8133 -3.5910 -4.8994 44 1 3.3523 -4.7627 -3.6727 45 1 1.7225 -4.8964 -4.3756 46 1 3.7468 -2.8960 -1.8297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495846736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:14 Heat of formation + Delta-G solvation = -56.061522 kcal Electronic energy + Delta-G solvation = -31253.955336 eV Core-core repulsion = 26954.614541 eV Total energy + Delta-G solvation = -4299.340796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34563 -40.61782 -39.25463 -37.52771 -35.85733 -34.86812 -34.00959 -33.00288 -32.32781 -31.11730 -28.19953 -27.50719 -27.40562 -27.10516 -25.87571 -24.85321 -22.18415 -20.98338 -20.91252 -19.76028 -19.15744 -18.00940 -17.83731 -17.22195 -16.68103 -16.18788 -15.94824 -15.48717 -15.22941 -14.97624 -14.80165 -14.46409 -14.32014 -14.09953 -13.77593 -13.45370 -13.14972 -12.84025 -12.71806 -12.64704 -12.58715 -12.41100 -12.31747 -12.22068 -12.01015 -11.95127 -11.92899 -11.65510 -11.44423 -11.28968 -11.18136 -10.60041 -10.47126 -10.36851 -10.34150 -9.89639 -9.71313 -9.57043 -9.30132 -8.68586 -8.59432 -8.22437 -6.37604 -4.12327 1.94142 2.13468 2.57645 2.79597 2.98464 3.14298 3.21888 3.32101 3.39756 3.86970 4.22460 4.31340 4.55301 4.66295 4.70582 4.84883 4.93352 5.07026 5.07948 5.15825 5.28541 5.30150 5.32952 5.37230 5.44910 5.46439 5.59264 5.60637 5.69832 5.70483 5.81721 5.86368 5.89756 6.02420 6.12650 6.19625 6.25253 6.33205 6.49054 6.58689 6.67215 7.04437 7.48033 7.71733 7.76180 8.02947 8.44677 8.59680 9.00559 9.66814 10.70925 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.004212 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.443785 B = 6646.571304 C = 8138.371243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.568 5.568 3 C 0.661 3.339 4 O -0.571 6.571 5 O -0.358 6.358 6 C 0.135 3.865 7 C -0.182 4.182 8 C -0.139 4.139 9 C -0.184 4.184 10 C 0.256 3.744 11 H 0.133 0.867 12 C 0.406 3.594 13 O -0.529 6.529 14 O -0.242 6.242 15 C -0.377 4.377 16 H 0.110 0.890 17 C 0.067 3.933 18 N -0.874 5.874 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.244 4.244 24 C 0.062 3.938 25 N -0.298 5.298 26 N -0.377 5.377 27 C 0.104 3.896 28 C 0.089 3.911 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.279 0.721 42 H 0.187 0.813 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 13.676 -15.226 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.306 5.306 3 C 0.416 3.584 4 O -0.461 6.461 5 O -0.272 6.272 6 C 0.098 3.902 7 C -0.240 4.240 8 C -0.197 4.197 9 C -0.242 4.242 10 C 0.150 3.850 11 H 0.151 0.849 12 C 0.250 3.750 13 O -0.424 6.424 14 O -0.150 6.150 15 C -0.453 4.453 16 H 0.127 0.873 17 C -0.136 4.136 18 N -0.513 5.513 19 Si 0.728 3.272 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.257 4.257 24 C -0.124 4.124 25 N -0.119 5.119 26 N -0.158 5.158 27 C -0.038 4.038 28 C -0.058 4.058 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.204 0.796 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.029 13.018 -15.978 20.636 hybrid contribution 0.963 -0.171 0.470 1.085 sum 1.992 12.847 -15.508 20.236 Atomic orbital electron populations 1.22036 0.78254 1.05046 1.01032 1.46055 1.07502 1.01991 1.75040 1.17786 0.83781 0.81034 0.75780 1.90863 1.12196 1.86730 1.56309 1.86306 1.40695 1.13534 1.86691 1.22044 0.90882 0.80780 0.96496 1.22509 1.00649 1.04394 0.96404 1.21843 0.99553 0.94902 1.03354 1.22523 1.00747 1.04370 0.96519 1.18160 0.98533 0.80043 0.88275 0.84947 1.22936 0.82352 0.82273 0.87447 1.90591 1.34944 1.69951 1.46871 1.83495 1.60604 1.28008 1.42846 1.20639 1.27064 1.00381 0.97233 0.87274 1.24511 0.97544 0.95144 0.96445 1.69601 1.42821 1.14734 1.24163 0.86253 0.81091 0.77981 0.81895 1.19763 1.20872 1.18420 1.19742 0.94165 1.10067 1.01684 1.24045 0.98202 0.96933 0.93253 1.77329 0.95751 1.17878 1.20936 1.48399 1.05983 1.38982 1.22464 1.21840 1.00041 0.93358 0.88551 1.22219 0.98664 0.95709 0.89227 0.92700 0.89130 0.90437 0.92320 0.91369 0.89261 0.91423 0.90330 0.91570 0.89201 0.91369 0.92040 0.91060 0.79618 0.90873 0.89401 0.89303 0.80443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 7.82 59.85 0.47 1.62 16 2 N -0.57 -9.65 2.52 -182.41 -0.46 -10.11 16 3 C 0.66 11.14 7.70 54.06 0.42 11.56 16 4 O -0.57 -10.32 11.21 -19.28 -0.22 -10.53 16 5 O -0.36 -5.23 8.71 -40.32 -0.35 -5.58 16 6 C 0.13 1.59 1.13 -90.62 -0.10 1.49 16 7 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 8 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 9 C -0.18 -2.23 8.37 37.16 0.31 -1.92 16 10 C 0.26 4.74 3.02 -70.24 -0.21 4.52 16 11 H 0.13 2.40 6.89 -51.93 -0.36 2.04 16 12 C 0.41 9.53 6.93 36.01 0.25 9.78 16 13 O -0.53 -13.61 13.74 -19.05 -0.26 -13.87 16 14 O -0.24 -6.32 8.50 -20.70 -0.18 -6.50 16 15 C -0.38 -11.13 10.10 30.92 0.31 -10.82 16 16 H 0.11 3.55 7.09 -52.49 -0.37 3.18 16 17 C 0.07 1.92 5.49 -17.53 -0.10 1.82 16 18 N -0.87 -25.83 13.96 55.48 0.77 -25.05 16 19 Si 0.90 21.16 28.62 -169.99 -4.86 16.29 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.24 -4.12 5.01 -105.06 -0.53 -4.65 16 24 C 0.06 1.01 10.67 -17.36 -0.19 0.82 16 25 N -0.30 -4.86 12.58 30.63 0.39 -4.47 16 26 N -0.38 -5.38 4.01 -68.16 -0.27 -5.66 16 27 C 0.10 0.95 11.47 59.85 0.69 1.64 16 28 C 0.09 1.34 11.40 -17.22 -0.20 1.14 16 29 H 0.05 0.66 6.50 -51.93 -0.34 0.33 16 30 H 0.09 1.50 5.99 -51.93 -0.31 1.19 16 31 H 0.08 1.06 7.37 -51.93 -0.38 0.68 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 39 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.28 7.54 8.31 -40.82 -0.34 7.21 16 42 H 0.19 2.64 5.12 -52.49 -0.27 2.38 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.18 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -35.65 380.00 -4.38 -40.03 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.43 Total: 5.30 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 1.76 Total: 14.42 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.43 Total: -45.29 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.00 Total: -36.47 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.86 Total: 16.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.65 -4.38 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495846736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.036 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds