Wall clock time and date at job start Tue Mar 31 2020 22:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21504 * 120.00080 * 179.97438 * 3 2 1 5 5 O 1.34640 * 119.99671 * 359.97438 * 3 2 1 6 6 C 1.45197 * 116.99910 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47063 * 60.00042 * 6 5 3 8 8 C 1.52999 * 109.47136 * 180.02562 * 6 5 3 9 9 C 1.53005 * 109.47249 * 300.00439 * 6 5 3 10 10 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 11 11 H 1.09000 * 109.47396 * 180.02562 * 10 2 1 12 12 C 1.50699 * 109.47062 * 59.99921 * 10 2 1 13 13 O 1.21203 * 119.99961 * 0.02562 * 12 10 2 14 14 O 1.34313 * 119.99688 * 179.97438 * 12 10 2 15 15 C 1.34918 * 116.99733 * 180.02562 * 14 12 10 16 16 H 1.07994 * 120.00023 * 0.02562 * 15 14 12 17 17 C 1.38753 * 120.00137 * 179.97438 * 15 14 12 18 18 N 1.31448 * 119.99986 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00226 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47063 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47478 * 120.00207 * 19 17 15 22 22 H 1.48504 * 109.47016 * 240.00044 * 19 17 15 23 23 C 1.50700 * 109.46899 * 300.00160 * 10 2 1 24 24 C 1.39866 * 126.04156 * 39.69200 * 23 10 2 25 25 N 1.30840 * 108.20281 * 179.81644 * 24 23 10 26 26 N 1.40077 * 108.20610 * 0.43855 * 25 24 23 27 27 C 1.46501 * 126.04101 * 179.73957 * 26 25 24 28 28 C 1.34951 * 107.92570 * 359.72156 * 26 25 24 29 29 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 32 32 H 1.09006 * 109.46520 * 60.00016 * 7 6 5 33 33 H 1.08999 * 109.46980 * 179.97438 * 7 6 5 34 34 H 1.08995 * 109.47172 * 300.00520 * 7 6 5 35 35 H 1.09003 * 109.46854 * 60.00384 * 8 6 5 36 36 H 1.08999 * 109.47060 * 180.02562 * 8 6 5 37 37 H 1.08995 * 109.47321 * 300.00076 * 8 6 5 38 38 H 1.08991 * 109.47239 * 59.99906 * 9 6 5 39 39 H 1.08999 * 109.46904 * 180.02562 * 9 6 5 40 40 H 1.09005 * 109.46794 * 299.99620 * 9 6 5 41 41 H 0.96994 * 119.99975 * 180.02562 * 18 17 15 42 42 H 1.07999 * 125.89840 * 359.97438 * 24 23 10 43 43 H 1.09000 * 109.46870 * 269.97682 * 27 26 25 44 44 H 1.09001 * 109.46729 * 29.97594 * 27 26 25 45 45 H 1.09003 * 109.47345 * 149.97874 * 27 26 25 46 46 H 1.07998 * 126.13000 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3540 1.1672 0.0005 5 8 1.4657 2.3332 -0.0005 6 6 2.2565 3.5509 0.0001 7 6 3.1401 3.5858 -1.2485 8 6 1.3245 4.7643 0.0000 9 6 3.1383 3.5858 1.2500 10 6 2.1975 -1.2687 0.0006 11 1 3.2692 -1.0696 0.0009 12 6 1.8334 -2.0595 -1.2295 13 8 1.0411 -1.6079 -2.0278 14 8 2.3879 -3.2643 -1.4417 15 6 2.0193 -3.9194 -2.5622 16 1 1.3086 -3.4711 -3.2407 17 6 2.5540 -5.1685 -2.8433 18 7 3.4194 -5.7138 -2.0177 19 14 2.0442 -6.0751 -4.3949 20 1 1.0660 -5.2520 -5.1503 21 1 3.2402 -6.3213 -5.2400 22 1 1.4217 -7.3725 -4.0282 23 6 1.8334 -2.0584 1.2314 24 6 0.5570 -2.1644 1.7934 25 7 0.6372 -2.9355 2.8474 26 7 1.9710 -3.3370 2.9954 27 6 2.4982 -4.2030 4.0529 28 6 2.6847 -2.7855 1.9915 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 2.5119 3.5610 -2.1390 33 1 3.7334 4.5002 -1.2483 34 1 3.8040 2.7214 -1.2481 35 1 0.6954 4.7392 0.8898 36 1 1.9181 5.6784 0.0000 37 1 0.6960 4.7397 -0.8902 38 1 3.8022 2.7215 1.2505 39 1 3.7316 4.5002 1.2506 40 1 2.5088 3.5610 2.1395 41 1 3.7935 -6.5868 -2.2144 42 1 -0.3403 -1.6934 1.4202 43 1 2.8129 -3.5924 4.8993 44 1 1.7220 -4.8974 4.3745 45 1 3.3520 -4.7634 3.6718 46 1 3.7452 -2.9031 1.8248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495846737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:18 Heat of formation + Delta-G solvation = -59.011292 kcal Electronic energy + Delta-G solvation = -31147.753693 eV Core-core repulsion = 26848.284986 eV Total energy + Delta-G solvation = -4299.468707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19646 -40.52555 -39.05381 -37.40809 -35.72010 -34.71129 -33.93367 -32.86649 -32.16162 -30.94279 -28.02488 -27.46539 -27.36428 -27.00637 -25.70428 -24.80359 -22.19201 -20.86899 -20.82721 -19.74217 -19.09119 -17.88426 -17.58440 -17.09197 -16.61777 -16.06035 -15.82768 -15.32443 -15.12437 -14.78580 -14.59190 -14.33638 -14.28585 -14.18959 -13.84162 -13.36356 -13.02510 -12.91777 -12.59082 -12.54168 -12.49769 -12.21658 -12.17273 -12.08421 -11.92087 -11.88305 -11.62287 -11.53669 -11.38811 -11.23364 -11.15702 -10.49158 -10.40902 -10.30281 -10.26333 -9.86516 -9.77793 -9.42091 -9.14224 -8.57544 -8.47675 -8.05941 -6.41344 -4.07841 2.10014 2.24145 2.73059 2.93407 3.06434 3.13730 3.19957 3.27156 3.54467 3.89503 4.09600 4.63844 4.70571 4.72076 4.75495 4.89099 5.09910 5.14988 5.21419 5.28720 5.38044 5.41217 5.44405 5.46763 5.50027 5.54707 5.63746 5.68997 5.74959 5.78721 5.85839 5.93087 6.02471 6.13481 6.22229 6.30087 6.37176 6.48872 6.57950 6.80042 6.82333 7.21373 7.39523 7.58428 7.91340 7.94828 8.53307 8.69498 9.07933 9.84754 10.76434 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.004099 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.310773 B = 6829.278381 C = 8696.620897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.567 5.567 3 C 0.660 3.340 4 O -0.571 6.571 5 O -0.359 6.359 6 C 0.135 3.865 7 C -0.184 4.184 8 C -0.139 4.139 9 C -0.182 4.182 10 C 0.257 3.743 11 H 0.131 0.869 12 C 0.395 3.605 13 O -0.547 6.547 14 O -0.204 6.204 15 C -0.378 4.378 16 H 0.096 0.904 17 C 0.043 3.957 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.243 4.243 24 C 0.060 3.940 25 N -0.302 5.302 26 N -0.376 5.376 27 C 0.105 3.895 28 C 0.097 3.903 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.268 0.732 42 H 0.185 0.815 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 12.849 10.322 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.305 5.305 3 C 0.415 3.585 4 O -0.461 6.461 5 O -0.273 6.273 6 C 0.098 3.902 7 C -0.241 4.241 8 C -0.196 4.196 9 C -0.240 4.240 10 C 0.151 3.849 11 H 0.149 0.851 12 C 0.239 3.761 13 O -0.444 6.444 14 O -0.110 6.110 15 C -0.454 4.454 16 H 0.113 0.887 17 C -0.161 4.161 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.255 4.255 24 C -0.127 4.127 25 N -0.123 5.123 26 N -0.158 5.158 27 C -0.037 4.037 28 C -0.051 4.051 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.201 0.799 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.583 12.177 11.219 16.633 hybrid contribution 0.262 -0.178 -1.499 1.532 sum -1.322 11.999 9.720 15.499 Atomic orbital electron populations 1.22009 0.78450 1.04864 1.00919 1.46080 1.07426 1.02085 1.74901 1.17798 0.83810 0.81019 0.75875 1.90862 1.12206 1.86708 1.56337 1.86301 1.40707 1.13555 1.86778 1.22031 0.90872 0.80836 0.96483 1.22522 1.00742 1.04364 0.96515 1.21839 0.99544 0.94930 1.03308 1.22510 1.00669 1.04383 0.96391 1.18162 0.98341 0.79828 0.88563 0.85142 1.23149 0.82418 0.83096 0.87403 1.90544 1.35947 1.70602 1.47287 1.83860 1.58979 1.26250 1.41866 1.21269 1.26409 0.99654 0.98101 0.88662 1.25298 0.95812 0.95863 0.99088 1.69996 1.27552 1.16649 1.35849 0.85645 0.78666 0.79064 0.80086 1.18935 1.20176 1.20238 1.19702 0.94124 1.10095 1.01606 1.23997 0.98167 0.97029 0.93479 1.77284 0.95919 1.17881 1.21214 1.48358 1.05910 1.39095 1.22416 1.21823 1.00065 0.93280 0.88513 1.22231 0.98772 0.95256 0.88807 0.92798 0.89189 0.90629 0.92111 0.91411 0.89165 0.91583 0.90369 0.91476 0.89220 0.91411 0.92333 0.92238 0.79850 0.91057 0.89478 0.89253 0.80333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 7.82 59.85 0.47 1.70 16 2 N -0.57 -10.15 2.52 -182.41 -0.46 -10.61 16 3 C 0.66 11.65 7.70 54.06 0.42 12.07 16 4 O -0.57 -10.85 11.21 -19.27 -0.22 -11.07 16 5 O -0.36 -5.45 8.71 -40.32 -0.35 -5.80 16 6 C 0.13 1.66 1.13 -90.62 -0.10 1.56 16 7 C -0.18 -2.31 8.37 37.16 0.31 -2.00 16 8 C -0.14 -1.26 8.85 37.16 0.33 -0.93 16 9 C -0.18 -2.12 8.37 37.16 0.31 -1.80 16 10 C 0.26 5.09 3.02 -70.23 -0.21 4.88 16 11 H 0.13 2.60 6.89 -51.93 -0.36 2.24 16 12 C 0.39 9.73 6.93 36.01 0.25 9.98 16 13 O -0.55 -14.29 13.74 -19.05 -0.26 -14.56 16 14 O -0.20 -5.75 9.67 -20.70 -0.20 -5.95 16 15 C -0.38 -11.08 9.64 30.92 0.30 -10.78 16 16 H 0.10 2.83 6.86 -52.49 -0.36 2.47 16 17 C 0.04 1.21 5.49 -17.53 -0.10 1.12 16 18 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 19 Si 0.94 21.29 29.55 -169.99 -5.02 16.26 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.24 -4.43 5.01 -105.05 -0.53 -4.96 16 24 C 0.06 1.03 10.67 -17.36 -0.19 0.85 16 25 N -0.30 -5.26 12.58 30.62 0.39 -4.88 16 26 N -0.38 -5.86 4.01 -68.16 -0.27 -6.14 16 27 C 0.10 1.09 11.47 59.85 0.69 1.78 16 28 C 0.10 1.60 11.40 -17.22 -0.20 1.41 16 29 H 0.05 0.69 6.48 -51.93 -0.34 0.36 16 30 H 0.09 1.55 6.00 -51.93 -0.31 1.24 16 31 H 0.08 1.08 7.37 -51.93 -0.38 0.69 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.39 5.88 -51.93 -0.31 1.08 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.18 2.79 5.10 -52.49 -0.27 2.52 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.18 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -35.71 381.11 -4.56 -40.28 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.41 Total: 5.97 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 1.75 Total: 14.85 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.41 Total: -45.73 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.03 Total: -37.37 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.71 -4.56 -40.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495846737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.736 kcal (2) G-P(sol) polarization free energy of solvation -35.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds