Wall clock time and date at job start Tue Mar 31 2020 22:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21504 * 120.00080 * 179.97438 * 3 2 1 5 5 O 1.34640 * 119.99671 * 359.97438 * 3 2 1 6 6 C 1.45197 * 116.99910 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47063 * 60.00042 * 6 5 3 8 8 C 1.52999 * 109.47136 * 180.02562 * 6 5 3 9 9 C 1.53005 * 109.47249 * 300.00439 * 6 5 3 10 10 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 11 11 H 1.09000 * 109.47396 * 180.02562 * 10 2 1 12 12 C 1.50699 * 109.47062 * 59.99921 * 10 2 1 13 13 O 1.21203 * 119.99961 * 0.02562 * 12 10 2 14 14 O 1.34313 * 119.99688 * 179.97438 * 12 10 2 15 15 C 1.34918 * 116.99733 * 180.02562 * 14 12 10 16 16 H 1.07994 * 120.00023 * 0.02562 * 15 14 12 17 17 C 1.38753 * 120.00137 * 179.97438 * 15 14 12 18 18 N 1.31448 * 119.99986 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00226 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47063 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47478 * 120.00207 * 19 17 15 22 22 H 1.48504 * 109.47016 * 240.00044 * 19 17 15 23 23 C 1.50700 * 109.46899 * 300.00160 * 10 2 1 24 24 C 1.39866 * 126.04156 * 39.69200 * 23 10 2 25 25 N 1.30840 * 108.20281 * 179.81644 * 24 23 10 26 26 N 1.40077 * 108.20610 * 0.43855 * 25 24 23 27 27 C 1.46501 * 126.04101 * 179.73957 * 26 25 24 28 28 C 1.34951 * 107.92570 * 359.72156 * 26 25 24 29 29 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 32 32 H 1.09006 * 109.46520 * 60.00016 * 7 6 5 33 33 H 1.08999 * 109.46980 * 179.97438 * 7 6 5 34 34 H 1.08995 * 109.47172 * 300.00520 * 7 6 5 35 35 H 1.09003 * 109.46854 * 60.00384 * 8 6 5 36 36 H 1.08999 * 109.47060 * 180.02562 * 8 6 5 37 37 H 1.08995 * 109.47321 * 300.00076 * 8 6 5 38 38 H 1.08991 * 109.47239 * 59.99906 * 9 6 5 39 39 H 1.08999 * 109.46904 * 180.02562 * 9 6 5 40 40 H 1.09005 * 109.46794 * 299.99620 * 9 6 5 41 41 H 0.96994 * 119.99975 * 180.02562 * 18 17 15 42 42 H 1.07999 * 125.89840 * 359.97438 * 24 23 10 43 43 H 1.09000 * 109.46870 * 269.97682 * 27 26 25 44 44 H 1.09001 * 109.46729 * 29.97594 * 27 26 25 45 45 H 1.09003 * 109.47345 * 149.97874 * 27 26 25 46 46 H 1.07998 * 126.13000 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3540 1.1672 0.0005 5 8 1.4657 2.3332 -0.0005 6 6 2.2565 3.5509 0.0001 7 6 3.1401 3.5858 -1.2485 8 6 1.3245 4.7643 0.0000 9 6 3.1383 3.5858 1.2500 10 6 2.1975 -1.2687 0.0006 11 1 3.2692 -1.0696 0.0009 12 6 1.8334 -2.0595 -1.2295 13 8 1.0411 -1.6079 -2.0278 14 8 2.3879 -3.2643 -1.4417 15 6 2.0193 -3.9194 -2.5622 16 1 1.3086 -3.4711 -3.2407 17 6 2.5540 -5.1685 -2.8433 18 7 3.4194 -5.7138 -2.0177 19 14 2.0442 -6.0751 -4.3949 20 1 1.0660 -5.2520 -5.1503 21 1 3.2402 -6.3213 -5.2400 22 1 1.4217 -7.3725 -4.0282 23 6 1.8334 -2.0584 1.2314 24 6 0.5570 -2.1644 1.7934 25 7 0.6372 -2.9355 2.8474 26 7 1.9710 -3.3370 2.9954 27 6 2.4982 -4.2030 4.0529 28 6 2.6847 -2.7855 1.9915 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 2.5119 3.5610 -2.1390 33 1 3.7334 4.5002 -1.2483 34 1 3.8040 2.7214 -1.2481 35 1 0.6954 4.7392 0.8898 36 1 1.9181 5.6784 0.0000 37 1 0.6960 4.7397 -0.8902 38 1 3.8022 2.7215 1.2505 39 1 3.7316 4.5002 1.2506 40 1 2.5088 3.5610 2.1395 41 1 3.7935 -6.5868 -2.2144 42 1 -0.3403 -1.6934 1.4202 43 1 2.8129 -3.5924 4.8993 44 1 1.7220 -4.8974 4.3745 45 1 3.3520 -4.7634 3.6718 46 1 3.7452 -2.9031 1.8248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495846737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:17 Heat of formation + Delta-G solvation = -82.012432 kcal Electronic energy + Delta-G solvation = -31148.751097 eV Core-core repulsion = 26848.284986 eV Total energy + Delta-G solvation = -4300.466112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.55873 -41.79223 -40.93349 -38.79357 -37.37793 -36.46354 -35.04311 -34.30379 -33.99323 -32.35412 -29.40232 -28.33331 -28.32007 -28.18659 -27.53197 -26.33165 -23.61446 -22.40589 -22.06769 -21.15696 -20.42256 -19.86767 -19.16069 -18.62208 -17.89706 -17.51093 -17.26060 -16.82467 -16.58236 -16.28040 -16.18903 -15.94415 -15.55937 -15.42983 -15.05562 -14.62222 -14.43217 -14.27501 -13.83169 -13.80477 -13.55456 -13.46175 -13.43022 -13.29811 -13.11275 -13.04148 -12.91178 -12.83280 -12.75253 -12.46283 -12.33424 -12.24749 -12.18831 -11.97937 -11.72971 -11.37921 -11.30566 -11.08769 -10.67531 -10.39720 -9.92061 -9.47656 -8.52566 -6.30723 0.80500 0.91416 1.25747 1.34266 1.48545 1.52431 1.57440 1.69461 1.80442 2.15497 2.70205 2.95555 2.98567 3.51650 3.78354 3.83420 3.83825 3.98477 4.04152 4.10272 4.21762 4.25776 4.46621 4.54952 4.57500 4.64082 4.65418 4.70075 4.73682 4.78266 4.80107 4.83796 4.87212 4.91121 4.91940 5.13358 5.17343 5.26592 5.32812 5.39209 5.45452 5.50061 5.83716 6.03561 6.22156 6.60795 6.62972 6.92445 7.18863 7.76018 8.67392 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.004099 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.310773 B = 6829.278381 C = 8696.620897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.572 5.572 3 C 0.657 3.343 4 O -0.589 6.589 5 O -0.358 6.358 6 C 0.120 3.880 7 C -0.182 4.182 8 C -0.132 4.132 9 C -0.177 4.177 10 C 0.273 3.727 11 H 0.126 0.874 12 C 0.395 3.605 13 O -0.566 6.566 14 O -0.228 6.228 15 C -0.416 4.416 16 H 0.080 0.920 17 C 0.001 3.999 18 N -0.896 5.896 19 Si 1.012 2.988 20 H -0.266 1.266 21 H -0.260 1.260 22 H -0.261 1.261 23 C -0.268 4.268 24 C 0.053 3.947 25 N -0.318 5.318 26 N -0.372 5.372 27 C 0.093 3.907 28 C 0.096 3.904 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.278 0.722 42 H 0.197 0.803 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 13.569 11.074 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.311 5.311 3 C 0.413 3.587 4 O -0.481 6.481 5 O -0.272 6.272 6 C 0.084 3.916 7 C -0.239 4.239 8 C -0.189 4.189 9 C -0.234 4.234 10 C 0.167 3.833 11 H 0.143 0.857 12 C 0.241 3.759 13 O -0.464 6.464 14 O -0.135 6.135 15 C -0.492 4.492 16 H 0.098 0.902 17 C -0.200 4.200 18 N -0.533 5.533 19 Si 0.831 3.169 20 H -0.190 1.190 21 H -0.185 1.185 22 H -0.185 1.185 23 C -0.281 4.281 24 C -0.132 4.132 25 N -0.140 5.140 26 N -0.153 5.153 27 C -0.046 4.046 28 C -0.053 4.053 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.214 0.786 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.125 0.875 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.787 12.918 12.012 17.730 hybrid contribution 0.361 -0.306 -1.653 1.720 sum -1.426 12.612 10.359 16.383 Atomic orbital electron populations 1.22076 0.77107 1.04259 1.02546 1.46165 1.08265 1.01652 1.74985 1.17909 0.83638 0.81581 0.75586 1.90858 1.13092 1.87111 1.56998 1.86322 1.41099 1.13500 1.86327 1.22524 0.91835 0.80634 0.96584 1.22494 1.00488 1.04292 0.96649 1.21869 0.99345 0.94001 1.03698 1.22456 1.00376 1.04356 0.96258 1.17877 0.98177 0.80216 0.87049 0.85676 1.24227 0.81112 0.82263 0.88344 1.90509 1.36616 1.70823 1.48420 1.83877 1.59976 1.27798 1.41875 1.21422 1.27804 1.01040 0.98969 0.90226 1.26416 0.95226 0.95883 1.02491 1.70067 1.28153 1.17411 1.37676 0.84644 0.78803 0.77790 0.75631 1.18988 1.18486 1.18541 1.19671 0.95233 1.11537 1.01648 1.24207 0.98372 0.97180 0.93471 1.77227 0.97201 1.18181 1.21370 1.48774 1.05182 1.38593 1.22738 1.22259 1.00795 0.93437 0.88155 1.22591 0.99657 0.94379 0.88673 0.90014 0.91358 0.89521 0.92543 0.88482 0.92517 0.90836 0.87608 0.91475 0.92215 0.88715 0.91723 0.91311 0.78632 0.88397 0.88778 0.87502 0.78405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.52 7.82 127.77 1.00 3.52 16 2 N -0.57 -20.90 2.52 -961.43 -2.42 -23.32 16 3 C 0.66 23.57 7.70 129.79 1.00 24.57 16 4 O -0.59 -23.10 11.21 19.83 0.22 -22.88 16 5 O -0.36 -10.71 8.71 -55.49 -0.48 -11.19 16 6 C 0.12 2.80 1.13 -10.79 -0.01 2.78 16 7 C -0.18 -4.44 8.37 71.98 0.60 -3.84 16 8 C -0.13 -2.02 8.85 71.98 0.64 -1.38 16 9 C -0.18 -3.86 8.37 71.98 0.60 -3.26 16 10 C 0.27 11.20 3.02 43.50 0.13 11.33 16 11 H 0.13 5.22 6.89 -2.39 -0.02 5.20 16 12 C 0.39 20.30 6.93 71.24 0.49 20.79 16 13 O -0.57 -30.88 13.74 20.79 0.29 -30.59 16 14 O -0.23 -13.42 9.67 14.87 0.14 -13.28 16 15 C -0.42 -25.26 9.64 67.94 0.66 -24.61 16 16 H 0.08 4.94 6.86 -2.91 -0.02 4.92 16 17 C 0.00 0.03 5.49 84.87 0.47 0.50 16 18 N -0.90 -52.06 13.67 21.63 0.30 -51.77 16 19 Si 1.01 43.58 29.55 68.60 2.03 45.61 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 C -0.27 -9.93 5.01 -20.14 -0.10 -10.03 16 24 C 0.05 1.85 10.67 85.23 0.91 2.76 16 25 N -0.32 -10.90 12.58 -57.02 -0.72 -11.62 16 26 N -0.37 -11.19 4.01 -369.55 -1.48 -12.68 16 27 C 0.09 1.75 11.47 127.77 1.47 3.22 16 28 C 0.10 3.16 11.40 83.54 0.95 4.11 16 29 H 0.08 2.04 6.48 -2.39 -0.02 2.03 16 30 H 0.07 2.42 6.00 -2.39 -0.01 2.40 16 31 H 0.09 2.45 7.37 -2.38 -0.02 2.43 16 32 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.79 5.88 -2.39 -0.01 1.77 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.69 5.88 -2.39 -0.01 1.68 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.20 5.97 5.10 -2.91 -0.01 5.95 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.20 5.52 8.06 -2.91 -0.02 5.50 16 Total: -1.00 -79.88 381.11 7.67 -72.21 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 1.01 Total: 29.05 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 8.80 Total: 30.46 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -4.33 Total: -99.38 kcal Atomic # 8 Polarization: -78.11 SS G_CDS: 0.17 Total: -77.95 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -79.88 7.67 -72.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495846737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.806 kcal (2) G-P(sol) polarization free energy of solvation -79.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds