Wall clock time and date at job start Tue Mar 31 2020 22:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.52998 * 109.47024 * 240.00220 * 2 1 3 5 5 O 1.45198 * 109.47118 * 120.00676 * 2 1 3 6 6 C 1.34634 * 117.00454 * 59.99679 * 5 2 1 7 7 O 1.21514 * 119.99794 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00021 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46656 * 299.72073 * 9 8 6 11 11 C 1.52997 * 109.47021 * 59.71828 * 9 8 6 12 12 C 1.50696 * 109.47148 * 179.72251 * 9 8 6 13 13 N 1.30005 * 127.33465 * 0.02562 * 12 9 8 14 14 O 1.20657 * 112.32202 * 179.97438 * 13 12 9 15 15 C 1.33517 * 113.15789 * 359.97438 * 14 13 12 16 16 C 1.37420 * 106.32830 * 359.76121 * 15 14 13 17 17 C 1.47324 * 128.57368 * 180.22193 * 16 15 14 18 18 O 1.21630 * 120.00435 * 180.15052 * 17 16 15 19 19 N 1.34778 * 119.99745 * 0.14769 * 17 16 15 20 20 C 1.36972 * 119.99950 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00091 * 359.97438 * 20 19 17 22 22 C 1.38983 * 120.00063 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99912 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00116 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47193 * 59.99238 * 24 22 20 26 26 H 1.48499 * 109.47173 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46792 * 299.99801 * 24 22 20 28 28 H 1.09003 * 109.47056 * 299.99821 * 1 2 3 29 29 H 1.08999 * 109.46878 * 59.99793 * 1 2 3 30 30 H 1.08997 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46800 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46961 * 300.00429 * 3 2 1 33 33 H 1.09001 * 109.46524 * 60.00216 * 3 2 1 34 34 H 1.08998 * 109.47435 * 300.00287 * 4 2 1 35 35 H 1.09008 * 109.47422 * 60.00035 * 4 2 1 36 36 H 1.09000 * 109.47606 * 180.02562 * 4 2 1 37 37 H 0.97005 * 120.00161 * 359.72161 * 8 6 5 38 38 H 1.09005 * 109.47120 * 60.00270 * 10 9 8 39 39 H 1.09002 * 109.46792 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.47539 * 299.99969 * 10 9 8 41 41 H 1.08996 * 109.47350 * 60.00555 * 11 9 8 42 42 H 1.09002 * 109.46917 * 180.02562 * 11 9 8 43 43 H 1.08995 * 109.47505 * 300.00396 * 11 9 8 44 44 H 1.07996 * 126.83562 * 179.97438 * 15 14 13 45 45 H 0.97000 * 120.00221 * 0.02562 * 19 17 16 46 46 H 0.96995 * 119.99842 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9516 -2.5098 0.5034 8 7 2.0673 -2.6655 2.4170 9 6 1.6741 -4.0671 2.5829 10 6 0.1487 -4.1639 2.6522 11 6 2.1835 -4.8838 1.3937 12 6 2.2702 -4.6086 3.8566 13 7 3.0205 -3.9743 4.7079 14 8 3.3485 -4.6704 5.6373 15 6 2.8619 -5.9115 5.5611 16 6 2.1212 -5.9658 4.4050 17 6 1.3669 -7.1030 3.8498 18 8 0.7616 -6.9781 2.8023 19 7 1.3476 -8.2819 4.5028 20 6 0.6468 -9.3394 3.9864 21 1 0.1093 -9.2284 3.0564 22 6 0.6265 -10.5549 4.6600 23 7 1.2801 -10.6898 5.7921 24 14 -0.3287 -11.9973 3.9555 25 1 0.2089 -12.3393 2.6142 26 1 -0.1926 -13.1691 4.8575 27 1 -1.7626 -11.6299 3.8350 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7216 -1.2491 37 1 2.6299 -2.2378 3.0813 38 1 -0.2825 -3.7722 1.7308 39 1 -0.1438 -5.2066 2.7761 40 1 -0.2143 -3.5820 3.4993 41 1 3.2701 -4.8149 1.3443 42 1 1.8905 -5.9265 1.5169 43 1 1.7523 -4.4921 0.4724 44 1 3.0166 -6.7121 6.2692 45 1 1.8301 -8.3815 5.3384 46 1 1.2656 -11.5380 6.2623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496171557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:10 Heat of formation + Delta-G solvation = -56.479482 kcal Electronic energy + Delta-G solvation = -30676.679818 eV Core-core repulsion = 26377.320898 eV Total energy + Delta-G solvation = -4299.358920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.57185 -40.83627 -38.56866 -37.96364 -35.82788 -34.30517 -34.12530 -32.81797 -31.89718 -31.18540 -30.59881 -27.56724 -27.49534 -26.82469 -25.84706 -24.22897 -23.03831 -22.37245 -20.21279 -19.66156 -19.53810 -18.59918 -18.12387 -17.34983 -17.19467 -16.50722 -16.06687 -15.99936 -15.17558 -14.74124 -14.62360 -14.48578 -14.21700 -13.80219 -13.72597 -13.59179 -13.37484 -13.27273 -12.70721 -12.61174 -12.41458 -12.04086 -12.02089 -11.86609 -11.73890 -11.66527 -11.48069 -11.36984 -11.21329 -11.11660 -11.05341 -10.97468 -10.58868 -10.42643 -10.36434 -9.88170 -9.74593 -9.74323 -9.24449 -8.95943 -8.65055 -8.21736 -6.69451 -4.03931 1.54596 2.06374 2.16224 2.94188 3.11674 3.14864 3.18160 3.35577 3.94859 4.02643 4.08171 4.14146 4.58147 4.62065 4.70265 4.76770 4.85082 5.12286 5.23860 5.29368 5.33731 5.38024 5.44105 5.49202 5.52830 5.61103 5.73225 5.73412 5.81530 5.85674 5.99415 6.17744 6.18415 6.23135 6.25362 6.30199 6.34839 6.50767 6.66128 6.88168 6.89582 7.31484 7.58350 7.79775 8.33593 8.41158 8.53386 8.91676 9.23615 9.78128 10.46946 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.002724 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.432043 B =10274.924046 C =11332.382032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.368 6.368 6 C 0.655 3.345 7 O -0.560 6.560 8 N -0.706 5.706 9 C 0.290 3.710 10 C -0.171 4.171 11 C -0.170 4.170 12 C 0.049 3.951 13 N -0.367 5.367 14 O 0.091 5.909 15 C -0.045 4.045 16 C -0.193 4.193 17 C 0.495 3.505 18 O -0.576 6.576 19 N -0.535 5.535 20 C -0.295 4.295 21 H 0.111 0.889 22 C 0.026 3.974 23 N -0.888 5.888 24 Si 0.936 3.064 25 H -0.270 1.270 26 H -0.282 1.282 27 H -0.270 1.270 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.407 0.593 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.225 0.775 45 H 0.392 0.608 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 16.640 -4.520 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.283 6.283 6 C 0.408 3.592 7 O -0.449 6.449 8 N -0.365 5.365 9 C 0.205 3.795 10 C -0.229 4.229 11 C -0.228 4.228 12 C -0.114 4.114 13 N -0.073 5.073 14 O 0.030 5.970 15 C -0.127 4.127 16 C -0.201 4.201 17 C 0.282 3.718 18 O -0.463 6.463 19 N -0.168 5.168 20 C -0.425 4.425 21 H 0.129 0.871 22 C -0.178 4.178 23 N -0.527 5.527 24 Si 0.762 3.238 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.195 1.195 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.242 0.758 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.241 0.759 45 H 0.226 0.774 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.944 17.542 -5.437 18.600 hybrid contribution -0.099 -1.284 0.581 1.412 sum 2.845 16.258 -4.857 17.205 Atomic orbital electron populations 1.22520 0.94006 1.05316 1.02232 1.22024 0.94381 0.91378 0.82268 1.21853 1.02173 0.92748 1.02955 1.22520 1.01461 1.03772 0.96325 1.86298 1.71735 1.23952 1.46365 1.17922 0.78889 0.80217 0.82156 1.90854 1.40911 1.69911 1.43215 1.44985 1.55323 1.12321 1.23851 1.18333 0.95195 0.77039 0.88968 1.22482 0.91601 1.06424 1.02395 1.22465 0.99746 1.03604 0.97028 1.24568 0.98098 0.91289 0.97419 1.73399 1.16409 1.18857 0.98648 1.84446 1.56863 1.19085 1.36614 1.26338 0.97759 0.88748 0.99852 1.22622 1.04944 0.95901 0.96619 1.16383 0.86583 0.81849 0.86957 1.90501 1.49129 1.82540 1.24131 1.41787 1.43747 1.09009 1.22236 1.19803 1.26459 0.88381 1.07808 0.87101 1.25394 0.97438 0.99319 0.95637 1.69583 1.40692 1.27326 1.15106 0.85815 0.79889 0.79277 0.78781 1.19537 1.20761 1.19543 0.92303 0.91323 0.89080 0.91568 0.90260 0.91571 0.89081 0.91319 0.92308 0.75815 0.89986 0.87059 0.93819 0.93809 0.87202 0.89907 0.75881 0.77391 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 2 C 0.14 1.50 1.13 -90.62 -0.10 1.40 16 3 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 4 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 5 O -0.37 -5.02 9.94 -40.31 -0.40 -5.42 16 6 C 0.65 10.10 7.47 54.05 0.40 10.50 16 7 O -0.56 -9.35 8.09 -19.28 -0.16 -9.50 16 8 N -0.71 -10.94 5.10 -53.56 -0.27 -11.21 16 9 C 0.29 5.01 0.78 -132.97 -0.10 4.90 16 10 C -0.17 -3.08 8.24 37.16 0.31 -2.77 16 11 C -0.17 -3.06 8.24 37.16 0.31 -2.76 16 12 C 0.05 0.87 5.92 -79.76 -0.47 0.40 16 13 N -0.37 -6.00 11.05 34.79 0.38 -5.61 16 14 O 0.09 1.37 11.06 18.59 0.21 1.58 16 15 C -0.04 -0.66 11.86 30.43 0.36 -0.30 16 16 C -0.19 -3.55 6.33 -102.89 -0.65 -4.20 16 17 C 0.49 10.89 7.60 -12.56 -0.10 10.80 16 18 O -0.58 -13.87 10.62 5.25 0.06 -13.82 16 19 N -0.53 -12.32 5.28 -11.98 -0.06 -12.38 16 20 C -0.30 -7.48 9.68 -14.98 -0.14 -7.63 16 21 H 0.11 2.92 7.15 -52.49 -0.38 2.55 16 22 C 0.03 0.64 5.50 -17.45 -0.10 0.54 16 23 N -0.89 -21.98 13.05 55.50 0.72 -21.26 16 24 Si 0.94 19.44 29.55 -169.99 -5.02 14.41 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 35 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.41 5.91 7.85 -40.82 -0.32 5.59 16 38 H 0.08 1.48 6.18 -51.93 -0.32 1.16 16 39 H 0.11 2.27 5.04 -51.93 -0.26 2.01 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 2.24 5.13 -51.93 -0.27 1.97 16 43 H 0.08 1.50 6.14 -51.93 -0.32 1.18 16 44 H 0.22 2.53 7.68 -52.49 -0.40 2.13 16 45 H 0.39 8.44 7.08 -40.82 -0.29 8.15 16 46 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -27.88 369.02 -4.43 -32.31 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -6.11 Total: 18.57 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 0.66 Total: 6.78 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.77 Total: -50.47 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.30 Total: -27.16 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.88 -4.43 -32.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496171557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.169 kcal (2) G-P(sol) polarization free energy of solvation -27.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds