Wall clock time and date at job start Tue Mar 31 2020 22:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.52998 * 109.47024 * 240.00220 * 2 1 3 5 5 O 1.45198 * 109.47118 * 120.00676 * 2 1 3 6 6 C 1.34634 * 117.00454 * 59.99679 * 5 2 1 7 7 O 1.21514 * 119.99794 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00021 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46656 * 299.72073 * 9 8 6 11 11 C 1.52997 * 109.47021 * 59.71828 * 9 8 6 12 12 C 1.50696 * 109.47148 * 179.72251 * 9 8 6 13 13 N 1.30005 * 127.33465 * 0.02562 * 12 9 8 14 14 O 1.20657 * 112.32202 * 179.97438 * 13 12 9 15 15 C 1.33517 * 113.15789 * 359.97438 * 14 13 12 16 16 C 1.37420 * 106.32830 * 359.76121 * 15 14 13 17 17 C 1.47324 * 128.57368 * 180.22193 * 16 15 14 18 18 O 1.21630 * 120.00435 * 180.15052 * 17 16 15 19 19 N 1.34778 * 119.99745 * 0.14769 * 17 16 15 20 20 C 1.36972 * 119.99950 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00091 * 359.97438 * 20 19 17 22 22 C 1.38983 * 120.00063 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99912 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00116 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47193 * 59.99238 * 24 22 20 26 26 H 1.48499 * 109.47173 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46792 * 299.99801 * 24 22 20 28 28 H 1.09003 * 109.47056 * 299.99821 * 1 2 3 29 29 H 1.08999 * 109.46878 * 59.99793 * 1 2 3 30 30 H 1.08997 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46800 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46961 * 300.00429 * 3 2 1 33 33 H 1.09001 * 109.46524 * 60.00216 * 3 2 1 34 34 H 1.08998 * 109.47435 * 300.00287 * 4 2 1 35 35 H 1.09008 * 109.47422 * 60.00035 * 4 2 1 36 36 H 1.09000 * 109.47606 * 180.02562 * 4 2 1 37 37 H 0.97005 * 120.00161 * 359.72161 * 8 6 5 38 38 H 1.09005 * 109.47120 * 60.00270 * 10 9 8 39 39 H 1.09002 * 109.46792 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.47539 * 299.99969 * 10 9 8 41 41 H 1.08996 * 109.47350 * 60.00555 * 11 9 8 42 42 H 1.09002 * 109.46917 * 180.02562 * 11 9 8 43 43 H 1.08995 * 109.47505 * 300.00396 * 11 9 8 44 44 H 1.07996 * 126.83562 * 179.97438 * 15 14 13 45 45 H 0.97000 * 120.00221 * 0.02562 * 19 17 16 46 46 H 0.96995 * 119.99842 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9516 -2.5098 0.5034 8 7 2.0673 -2.6655 2.4170 9 6 1.6741 -4.0671 2.5829 10 6 0.1487 -4.1639 2.6522 11 6 2.1835 -4.8838 1.3937 12 6 2.2702 -4.6086 3.8566 13 7 3.0205 -3.9743 4.7079 14 8 3.3485 -4.6704 5.6373 15 6 2.8619 -5.9115 5.5611 16 6 2.1212 -5.9658 4.4050 17 6 1.3669 -7.1030 3.8498 18 8 0.7616 -6.9781 2.8023 19 7 1.3476 -8.2819 4.5028 20 6 0.6468 -9.3394 3.9864 21 1 0.1093 -9.2284 3.0564 22 6 0.6265 -10.5549 4.6600 23 7 1.2801 -10.6898 5.7921 24 14 -0.3287 -11.9973 3.9555 25 1 0.2089 -12.3393 2.6142 26 1 -0.1926 -13.1691 4.8575 27 1 -1.7626 -11.6299 3.8350 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7216 -1.2491 37 1 2.6299 -2.2378 3.0813 38 1 -0.2825 -3.7722 1.7308 39 1 -0.1438 -5.2066 2.7761 40 1 -0.2143 -3.5820 3.4993 41 1 3.2701 -4.8149 1.3443 42 1 1.8905 -5.9265 1.5169 43 1 1.7523 -4.4921 0.4724 44 1 3.0166 -6.7121 6.2692 45 1 1.8301 -8.3815 5.3384 46 1 1.2656 -11.5380 6.2623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496171557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:10 Heat of formation + Delta-G solvation = -75.164537 kcal Electronic energy + Delta-G solvation = -30677.490062 eV Core-core repulsion = 26377.320898 eV Total energy + Delta-G solvation = -4300.169165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.94667 -41.99347 -40.16037 -39.30695 -37.09565 -36.00783 -35.22524 -34.20510 -33.48802 -32.68996 -32.00876 -28.39955 -28.27875 -28.26842 -27.57894 -25.71211 -24.48036 -23.57605 -21.44467 -21.16849 -20.84091 -20.19654 -19.46441 -18.69921 -18.61299 -17.76463 -17.30046 -17.20264 -16.76226 -16.30423 -15.85796 -15.75713 -15.55414 -15.31907 -15.25561 -14.79387 -14.76248 -14.52962 -14.14416 -13.59429 -13.34187 -13.33121 -13.12950 -13.04843 -12.91160 -12.89709 -12.85103 -12.73365 -12.55734 -12.52458 -12.43515 -12.29966 -12.14247 -12.09662 -11.51069 -11.35340 -11.21159 -10.94404 -10.66745 -10.43857 -10.29087 -10.03854 -8.52283 -5.95603 0.21082 0.63897 1.01993 1.46036 1.46840 1.55091 1.72713 2.04550 2.29623 2.37860 2.63303 2.94252 3.17158 3.27252 3.47309 3.76529 3.81351 3.82842 3.96235 3.98156 4.00005 4.24769 4.47968 4.56382 4.63577 4.63621 4.70499 4.76908 4.77595 4.78110 4.79892 4.82756 4.86647 4.89665 5.14055 5.20569 5.30962 5.32960 5.33837 5.38801 5.43203 5.54479 5.95078 6.35502 6.54063 7.07070 7.10701 7.31571 7.46161 8.02320 8.64272 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.002724 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.432043 B =10274.924046 C =11332.382032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.654 3.346 7 O -0.575 6.575 8 N -0.701 5.701 9 C 0.293 3.707 10 C -0.160 4.160 11 C -0.159 4.159 12 C 0.042 3.958 13 N -0.362 5.362 14 O 0.110 5.890 15 C 0.004 3.996 16 C -0.233 4.233 17 C 0.504 3.496 18 O -0.600 6.600 19 N -0.546 5.546 20 C -0.327 4.327 21 H 0.088 0.912 22 C -0.005 4.005 23 N -0.908 5.908 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.413 0.587 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.264 0.736 45 H 0.399 0.601 46 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 18.282 -3.886 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.191 4.191 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.408 3.592 7 O -0.465 6.465 8 N -0.361 5.361 9 C 0.207 3.793 10 C -0.218 4.218 11 C -0.218 4.218 12 C -0.120 4.120 13 N -0.067 5.067 14 O 0.048 5.952 15 C -0.078 4.078 16 C -0.241 4.241 17 C 0.292 3.708 18 O -0.488 6.488 19 N -0.180 5.180 20 C -0.457 4.457 21 H 0.106 0.894 22 C -0.207 4.207 23 N -0.547 5.547 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.249 0.751 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.279 0.721 45 H 0.233 0.767 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.949 19.231 -4.798 20.211 hybrid contribution -0.348 -1.594 0.359 1.671 sum 3.602 17.637 -4.439 18.540 Atomic orbital electron populations 1.22479 0.93951 1.03737 1.03570 1.22465 0.94671 0.92768 0.81369 1.21882 1.02403 0.90451 1.04387 1.22479 1.01550 1.02312 0.97397 1.86316 1.71664 1.22743 1.47727 1.18000 0.78603 0.80824 0.81801 1.90863 1.41498 1.70470 1.43691 1.44804 1.55505 1.11601 1.24238 1.18094 0.94488 0.77947 0.88736 1.22304 0.92507 1.04679 1.02333 1.22289 1.00042 1.02123 0.97308 1.24533 0.98594 0.91168 0.97741 1.73415 1.15992 1.18749 0.98525 1.84478 1.55949 1.18968 1.35846 1.26957 0.93872 0.88796 0.98166 1.22282 1.07518 0.95359 0.98944 1.16831 0.85485 0.82262 0.86217 1.90500 1.49829 1.83212 1.25272 1.41701 1.44590 1.08950 1.22780 1.19704 1.28144 0.89918 1.07920 0.89372 1.26016 0.97988 1.00800 0.95879 1.69621 1.41499 1.27951 1.15666 0.85005 0.78475 0.76898 0.78155 1.19697 1.19588 1.19710 0.92083 0.88879 0.92023 0.91237 0.87714 0.91244 0.92021 0.88875 0.92083 0.75108 0.90541 0.89577 0.93144 0.93110 0.89716 0.90464 0.72056 0.76666 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 8.37 71.98 0.60 -3.07 16 2 C 0.12 2.53 1.13 -10.79 -0.01 2.51 16 3 C -0.13 -1.79 8.85 71.98 0.64 -1.15 16 4 C -0.18 -3.67 8.37 71.98 0.60 -3.06 16 5 O -0.37 -9.73 9.94 -55.44 -0.55 -10.28 16 6 C 0.65 20.10 7.47 129.79 0.97 21.07 16 7 O -0.58 -19.64 8.09 19.80 0.16 -19.48 16 8 N -0.70 -21.45 5.10 -553.77 -2.83 -24.27 16 9 C 0.29 10.19 0.78 2.85 0.00 10.19 16 10 C -0.16 -5.92 8.24 71.98 0.59 -5.32 16 11 C -0.16 -5.88 8.24 71.98 0.59 -5.29 16 12 C 0.04 1.46 5.92 45.16 0.27 1.72 16 13 N -0.36 -11.03 11.05 -44.74 -0.49 -11.52 16 14 O 0.11 2.93 11.06 76.78 0.85 3.78 16 15 C 0.00 0.11 11.86 67.63 0.80 0.91 16 16 C -0.23 -8.36 6.33 -18.74 -0.12 -8.47 16 17 C 0.50 22.56 7.60 86.63 0.66 23.22 16 18 O -0.60 -30.13 10.62 -4.13 -0.04 -30.17 16 19 N -0.55 -25.48 5.28 -310.06 -1.64 -27.11 16 20 C -0.33 -17.05 9.68 84.07 0.81 -16.24 16 21 H 0.09 4.88 7.15 -2.91 -0.02 4.86 16 22 C -0.01 -0.25 5.50 84.93 0.47 0.21 16 23 N -0.91 -44.74 13.05 21.67 0.28 -44.46 16 24 Si 0.99 40.07 29.55 68.60 2.03 42.10 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.65 5.88 -2.39 -0.01 1.63 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.65 5.88 -2.39 -0.01 1.63 16 35 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.41 11.53 7.85 -92.70 -0.73 10.81 16 38 H 0.08 2.88 6.18 -2.38 -0.01 2.86 16 39 H 0.09 3.67 5.04 -2.39 -0.01 3.66 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 42 H 0.08 3.60 5.13 -2.39 -0.01 3.59 16 43 H 0.08 2.90 6.14 -2.39 -0.01 2.89 16 44 H 0.26 4.84 7.68 -2.91 -0.02 4.82 16 45 H 0.40 17.04 7.08 -92.71 -0.66 16.38 16 46 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 Total: -1.00 -62.12 369.02 4.31 -57.81 By element: Atomic # 1 Polarization: 46.71 SS G_CDS: -0.33 Total: 46.37 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 6.88 Total: 17.24 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -4.67 Total: -107.37 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: 0.41 Total: -56.16 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -62.12 4.31 -57.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496171557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.355 kcal (2) G-P(sol) polarization free energy of solvation -62.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds