Wall clock time and date at job start Tue Mar 31 2020 22:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47571 * 2 1 4 4 H 1.09003 * 109.46782 * 54.63151 * 3 2 1 5 5 O 1.42904 * 109.47166 * 294.63680 * 3 2 1 6 6 C 1.35959 * 117.00121 * 95.77330 * 5 3 2 7 7 C 1.38658 * 120.06260 * 1.32065 * 6 5 3 8 8 C 1.38180 * 119.96761 * 179.72168 * 7 6 5 9 9 C 1.38260 * 120.09852 * 0.55403 * 8 7 6 10 10 C 1.38261 * 120.11993 * 359.71960 * 9 8 7 11 11 C 1.38326 * 120.03185 * 0.02562 * 10 9 8 12 12 F 1.35099 * 120.04929 * 180.02562 * 11 10 9 13 13 C 1.50690 * 109.47226 * 174.63327 * 3 2 1 14 14 O 1.21284 * 120.00280 * 102.05847 * 13 3 2 15 15 N 1.34779 * 119.99996 * 282.05179 * 13 3 2 16 16 C 1.46493 * 120.00117 * 4.81475 * 15 13 3 17 17 C 1.50703 * 109.47111 * 266.47056 * 16 15 13 18 18 H 1.08006 * 119.99775 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99992 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00088 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99892 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47356 * 89.99946 * 21 19 17 23 23 H 1.48504 * 109.46954 * 210.00002 * 21 19 17 24 24 H 1.48501 * 109.47211 * 330.00085 * 21 19 17 25 25 C 1.46505 * 120.00003 * 184.80899 * 15 13 3 26 26 C 1.52997 * 109.47272 * 264.14323 * 25 15 13 27 27 O 1.42896 * 109.47548 * 64.99738 * 26 25 15 28 28 C 1.42899 * 114.00244 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.46749 * 59.99667 * 1 2 3 30 30 H 1.08995 * 109.47581 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46848 * 300.00243 * 1 2 3 32 32 H 1.09001 * 109.46848 * 239.99757 * 2 1 3 33 33 H 1.09002 * 109.46375 * 120.00194 * 2 1 3 34 34 H 1.08000 * 120.01570 * 359.97438 * 7 6 5 35 35 H 1.08006 * 119.95436 * 180.27442 * 8 7 6 36 36 H 1.07994 * 119.94373 * 179.74774 * 9 8 7 37 37 H 1.08004 * 119.98297 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.47301 * 26.46873 * 16 15 13 39 39 H 1.09000 * 109.47279 * 146.47207 * 16 15 13 40 40 H 0.97005 * 119.99972 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.46659 * 24.13988 * 25 15 13 42 42 H 1.08997 * 109.46887 * 144.13818 * 25 15 13 43 43 H 1.08998 * 109.47528 * 185.00299 * 26 25 15 44 44 H 1.09005 * 109.47173 * 304.99877 * 26 25 15 45 45 H 1.08995 * 109.47128 * 300.00231 * 28 27 26 46 46 H 1.08999 * 109.46979 * 60.00289 * 28 27 26 47 47 H 1.09005 * 109.47024 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6005 1.9832 0.8380 5 8 1.6695 2.0788 -1.2247 6 6 0.5308 2.8216 -1.2143 7 6 -0.1990 2.9578 -0.0432 8 6 -1.3530 3.7179 -0.0335 9 6 -1.7873 4.3337 -1.1927 10 6 -1.0657 4.1958 -2.3639 11 6 0.0930 3.4404 -2.3783 12 9 0.7988 3.3059 -3.5224 13 6 3.5412 1.4444 0.1329 14 8 4.2362 1.6325 -0.8431 15 7 4.1115 1.2373 1.3364 16 6 3.2780 0.9059 2.4946 17 6 2.9317 2.1679 3.2420 18 1 3.2966 3.1215 2.8896 19 6 2.1494 2.1052 4.3754 20 7 1.7056 0.9440 4.8048 21 14 1.7196 3.6697 5.3014 22 1 0.4562 4.2333 4.7615 23 1 1.5471 3.3598 6.7434 24 1 2.8140 4.6597 5.1353 25 6 5.5650 1.3435 1.4863 26 6 6.1919 -0.0480 1.3781 27 8 5.9842 -0.5630 0.0615 28 6 6.5337 -1.8657 -0.1464 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.1364 2.4734 0.8619 35 1 -1.9189 3.8275 0.8798 36 1 -2.6917 4.9238 -1.1833 37 1 -1.4072 4.6774 -3.2683 38 1 2.3622 0.4211 2.1564 39 1 3.8240 0.2313 3.1541 40 1 1.1554 0.8999 5.6025 41 1 5.9653 1.9844 0.7007 42 1 5.7993 1.7729 2.4603 43 1 7.2613 0.0188 1.5777 44 1 5.7273 -0.7134 2.1060 45 1 7.6102 -1.8370 0.0216 46 1 6.0759 -2.5684 0.5497 47 1 6.3344 -2.1850 -1.1694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591169134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:15 Heat of formation + Delta-G solvation = -130.148454 kcal Electronic energy + Delta-G solvation = -31357.237255 eV Core-core repulsion = 27034.763848 eV Total energy + Delta-G solvation = -4322.473408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.53218 -40.38830 -38.93675 -37.54051 -36.91150 -35.05407 -33.35189 -32.72201 -30.56715 -30.03356 -29.70629 -27.33337 -26.87985 -25.82616 -23.37608 -23.09554 -22.53021 -22.26978 -20.89081 -18.67803 -18.45552 -16.85571 -16.76761 -16.48243 -16.20004 -16.06311 -15.90128 -15.49452 -15.18601 -14.99337 -14.66449 -14.52925 -14.45119 -14.35547 -13.82087 -13.40522 -13.18633 -12.77360 -12.65595 -12.45518 -12.26208 -12.04581 -11.96431 -11.76380 -11.68375 -11.50377 -11.47942 -11.40156 -11.17619 -11.05255 -10.89828 -10.72039 -10.53659 -10.24572 -10.15377 -9.81088 -9.35629 -8.94104 -8.77827 -8.64385 -7.95863 -7.75999 -6.29772 -4.38521 1.24912 1.39854 3.01115 3.14019 3.22697 3.26634 3.38653 3.70905 4.01954 4.16446 4.25132 4.44110 4.84197 4.96742 5.01671 5.09935 5.17062 5.26715 5.30560 5.37538 5.37991 5.46085 5.60860 5.63640 5.67190 5.68714 5.71520 5.76788 5.82152 5.99864 6.05623 6.13447 6.17119 6.22194 6.30894 6.31591 6.35935 6.48856 6.54376 6.69989 6.78450 7.08002 7.37415 7.51972 7.60058 7.65216 7.92800 8.26807 8.68658 8.99515 9.30802 10.76001 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007928 B = 0.005475 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3531.158362 B = 5112.625215 C = 7594.230138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.137 4.137 3 C 0.065 3.935 4 H 0.119 0.881 5 O -0.279 6.279 6 C 0.109 3.891 7 C -0.182 4.182 8 C -0.087 4.087 9 C -0.139 4.139 10 C -0.121 4.121 11 C 0.060 3.940 12 F -0.134 7.134 13 C 0.523 3.477 14 O -0.535 6.535 15 N -0.590 5.590 16 C 0.226 3.774 17 C -0.545 4.545 18 H 0.062 0.938 19 C 0.068 3.932 20 N -0.888 5.888 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.124 3.876 26 C 0.045 3.955 27 O -0.371 6.371 28 C 0.032 3.968 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.034 0.966 46 H 0.036 0.964 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.037 -0.663 -6.489 7.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.174 4.174 3 C 0.006 3.994 4 H 0.136 0.864 5 O -0.191 6.191 6 C 0.062 3.938 7 C -0.200 4.200 8 C -0.105 4.105 9 C -0.157 4.157 10 C -0.140 4.140 11 C 0.041 3.959 12 F -0.113 7.113 13 C 0.309 3.691 14 O -0.412 6.412 15 N -0.323 5.323 16 C 0.106 3.894 17 C -0.583 4.583 18 H 0.081 0.919 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.000 4.000 26 C -0.033 4.033 27 O -0.290 6.290 28 C -0.065 4.065 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.696 -0.605 -7.190 7.702 hybrid contribution -0.040 0.490 1.074 1.181 sum -2.736 -0.115 -6.115 6.700 Atomic orbital electron populations 1.21900 0.94934 1.02115 1.02073 1.22003 0.96932 0.94428 1.04075 1.22537 0.94583 0.95300 0.87016 0.86388 1.86231 1.37237 1.60833 1.34825 1.19132 0.88077 0.93200 0.93372 1.21518 0.97199 1.03505 0.97808 1.21034 0.95539 0.95469 0.98471 1.20861 1.00754 1.02008 0.92076 1.20929 0.93687 0.99349 1.00023 1.16984 0.94029 1.03956 0.80973 1.91492 1.77893 1.94679 1.47247 1.19829 0.88628 0.77301 0.83358 1.90652 1.63957 1.49212 1.37350 1.47943 1.06551 1.68379 1.09408 1.19652 0.90523 0.96678 0.82506 1.21533 1.32669 0.93681 1.10458 0.91940 1.24922 0.95442 0.96343 0.96817 1.69915 1.34703 1.23812 1.24103 0.86574 0.79113 0.83255 0.79107 1.20292 1.20992 1.19713 1.21334 0.80978 0.94782 1.02892 1.23043 0.98624 0.96798 0.84842 1.88107 1.78767 1.31475 1.30629 1.22673 0.96888 0.85362 1.01571 0.92796 0.92257 0.91761 0.90876 0.88665 0.83125 0.85105 0.85231 0.84513 0.93598 0.94548 0.92392 0.89933 0.88754 0.93205 0.93017 0.94740 0.94552 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.49 37.16 0.32 -1.97 16 2 C -0.14 -2.36 5.26 -26.73 -0.14 -2.50 16 3 C 0.06 1.27 1.73 -27.89 -0.05 1.22 16 4 H 0.12 2.36 4.29 -51.93 -0.22 2.14 16 5 O -0.28 -5.66 9.11 -38.85 -0.35 -6.01 16 6 C 0.11 1.93 5.41 -39.18 -0.21 1.72 16 7 C -0.18 -2.87 7.28 -39.45 -0.29 -3.16 16 8 C -0.09 -1.13 10.04 -39.59 -0.40 -1.53 16 9 C -0.14 -1.61 10.04 -39.56 -0.40 -2.01 16 10 C -0.12 -1.55 10.02 -39.54 -0.40 -1.95 16 11 C 0.06 0.99 7.31 -39.30 -0.29 0.70 16 12 F -0.13 -2.39 17.11 2.25 0.04 -2.35 16 13 C 0.52 11.47 6.74 -10.99 -0.07 11.40 16 14 O -0.53 -13.17 15.70 -15.27 -0.24 -13.41 16 15 N -0.59 -12.26 2.41 -175.06 -0.42 -12.68 16 16 C 0.23 5.01 4.73 -5.20 -0.02 4.99 16 17 C -0.54 -13.20 8.95 -34.44 -0.31 -13.51 16 18 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 19 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -22.70 13.29 55.43 0.74 -21.96 16 21 Si 0.89 19.37 29.54 -169.99 -5.02 14.35 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 25 C 0.12 2.26 5.85 -4.04 -0.02 2.24 16 26 C 0.04 0.72 6.28 37.16 0.23 0.96 16 27 O -0.37 -6.69 10.01 -35.25 -0.35 -7.04 16 28 C 0.03 0.43 11.01 101.05 1.11 1.54 16 29 H 0.05 0.81 6.38 -51.93 -0.33 0.48 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.96 6.89 -51.93 -0.36 0.60 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.10 1.69 5.91 -51.93 -0.31 1.38 16 34 H 0.15 2.50 4.56 -52.49 -0.24 2.26 16 35 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.05 1.03 4.42 -51.93 -0.23 0.80 16 39 H 0.04 0.85 7.98 -51.93 -0.41 0.43 16 40 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 41 H 0.08 1.57 7.32 -51.93 -0.38 1.19 16 42 H 0.09 1.61 8.11 -51.93 -0.42 1.18 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.83 8.03 -51.93 -0.42 0.42 16 45 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -30.04 386.14 -7.50 -37.54 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.67 Total: 6.03 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.03 Total: -0.29 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.31 Total: -34.65 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.95 Total: -26.46 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.04 -7.50 -37.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591169134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.605 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds