Wall clock time and date at job start Tue Mar 31 2020 22:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47571 * 2 1 4 4 H 1.09003 * 109.46782 * 54.63151 * 3 2 1 5 5 O 1.42904 * 109.47166 * 294.63680 * 3 2 1 6 6 C 1.35959 * 117.00121 * 95.77330 * 5 3 2 7 7 C 1.38658 * 120.06260 * 1.32065 * 6 5 3 8 8 C 1.38180 * 119.96761 * 179.72168 * 7 6 5 9 9 C 1.38260 * 120.09852 * 0.55403 * 8 7 6 10 10 C 1.38261 * 120.11993 * 359.71960 * 9 8 7 11 11 C 1.38326 * 120.03185 * 0.02562 * 10 9 8 12 12 F 1.35099 * 120.04929 * 180.02562 * 11 10 9 13 13 C 1.50690 * 109.47226 * 174.63327 * 3 2 1 14 14 O 1.21284 * 120.00280 * 102.05847 * 13 3 2 15 15 N 1.34779 * 119.99996 * 282.05179 * 13 3 2 16 16 C 1.46493 * 120.00117 * 4.81475 * 15 13 3 17 17 C 1.50703 * 109.47111 * 266.47056 * 16 15 13 18 18 H 1.08006 * 119.99775 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99992 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00088 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99892 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47356 * 89.99946 * 21 19 17 23 23 H 1.48504 * 109.46954 * 210.00002 * 21 19 17 24 24 H 1.48501 * 109.47211 * 330.00085 * 21 19 17 25 25 C 1.46505 * 120.00003 * 184.80899 * 15 13 3 26 26 C 1.52997 * 109.47272 * 264.14323 * 25 15 13 27 27 O 1.42896 * 109.47548 * 64.99738 * 26 25 15 28 28 C 1.42899 * 114.00244 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.46749 * 59.99667 * 1 2 3 30 30 H 1.08995 * 109.47581 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46848 * 300.00243 * 1 2 3 32 32 H 1.09001 * 109.46848 * 239.99757 * 2 1 3 33 33 H 1.09002 * 109.46375 * 120.00194 * 2 1 3 34 34 H 1.08000 * 120.01570 * 359.97438 * 7 6 5 35 35 H 1.08006 * 119.95436 * 180.27442 * 8 7 6 36 36 H 1.07994 * 119.94373 * 179.74774 * 9 8 7 37 37 H 1.08004 * 119.98297 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.47301 * 26.46873 * 16 15 13 39 39 H 1.09000 * 109.47279 * 146.47207 * 16 15 13 40 40 H 0.97005 * 119.99972 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.46659 * 24.13988 * 25 15 13 42 42 H 1.08997 * 109.46887 * 144.13818 * 25 15 13 43 43 H 1.08998 * 109.47528 * 185.00299 * 26 25 15 44 44 H 1.09005 * 109.47173 * 304.99877 * 26 25 15 45 45 H 1.08995 * 109.47128 * 300.00231 * 28 27 26 46 46 H 1.08999 * 109.46979 * 60.00289 * 28 27 26 47 47 H 1.09005 * 109.47024 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6005 1.9832 0.8380 5 8 1.6695 2.0788 -1.2247 6 6 0.5308 2.8216 -1.2143 7 6 -0.1990 2.9578 -0.0432 8 6 -1.3530 3.7179 -0.0335 9 6 -1.7873 4.3337 -1.1927 10 6 -1.0657 4.1958 -2.3639 11 6 0.0930 3.4404 -2.3783 12 9 0.7988 3.3059 -3.5224 13 6 3.5412 1.4444 0.1329 14 8 4.2362 1.6325 -0.8431 15 7 4.1115 1.2373 1.3364 16 6 3.2780 0.9059 2.4946 17 6 2.9317 2.1679 3.2420 18 1 3.2966 3.1215 2.8896 19 6 2.1494 2.1052 4.3754 20 7 1.7056 0.9440 4.8048 21 14 1.7196 3.6697 5.3014 22 1 0.4562 4.2333 4.7615 23 1 1.5471 3.3598 6.7434 24 1 2.8140 4.6597 5.1353 25 6 5.5650 1.3435 1.4863 26 6 6.1919 -0.0480 1.3781 27 8 5.9842 -0.5630 0.0615 28 6 6.5337 -1.8657 -0.1464 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.1364 2.4734 0.8619 35 1 -1.9189 3.8275 0.8798 36 1 -2.6917 4.9238 -1.1833 37 1 -1.4072 4.6774 -3.2683 38 1 2.3622 0.4211 2.1564 39 1 3.8240 0.2313 3.1541 40 1 1.1554 0.8999 5.6025 41 1 5.9653 1.9844 0.7007 42 1 5.7993 1.7729 2.4603 43 1 7.2613 0.0188 1.5777 44 1 5.7273 -0.7134 2.1060 45 1 7.6102 -1.8370 0.0216 46 1 6.0759 -2.5684 0.5497 47 1 6.3344 -2.1850 -1.1694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591169134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:14 Heat of formation + Delta-G solvation = -146.144373 kcal Electronic energy + Delta-G solvation = -31357.930891 eV Core-core repulsion = 27034.763848 eV Total energy + Delta-G solvation = -4323.167043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.81807 -41.83095 -40.40972 -38.81101 -38.24576 -36.80465 -34.73494 -34.58172 -31.70776 -31.43116 -30.92251 -29.09615 -28.26253 -27.04658 -25.04088 -24.46854 -23.91559 -23.44601 -22.26140 -20.24253 -19.79995 -18.65621 -18.10551 -18.02312 -17.52674 -17.42268 -17.25341 -16.91858 -16.54931 -16.36061 -16.26850 -15.89957 -15.80760 -15.52255 -15.25426 -14.76351 -14.69257 -14.26277 -14.11607 -13.82468 -13.54613 -13.49569 -13.31816 -13.22486 -13.00454 -12.97189 -12.84470 -12.68123 -12.64092 -12.58996 -12.34476 -12.09106 -12.03381 -11.89144 -11.64160 -11.51168 -10.73240 -10.57819 -10.46889 -9.90213 -9.49860 -9.18538 -8.19542 -6.34334 0.13915 0.27511 1.42033 1.45488 1.50600 1.56508 1.74792 2.38688 2.56460 2.62806 2.94282 3.10206 3.24511 3.49453 3.71173 3.77345 3.89417 3.95872 4.12825 4.15738 4.21099 4.32152 4.36208 4.39465 4.42045 4.51285 4.52741 4.54791 4.61013 4.68229 4.79994 4.83708 4.91740 4.95769 4.98302 5.05321 5.11114 5.18605 5.27020 5.31770 5.45694 5.62506 5.71654 5.81069 6.04353 6.24249 6.31353 6.52084 6.78419 7.25758 7.39873 8.85399 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007928 B = 0.005475 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3531.158362 B = 5112.625215 C = 7594.230138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.073 3.927 4 H 0.111 0.889 5 O -0.307 6.307 6 C 0.077 3.923 7 C -0.192 4.192 8 C -0.084 4.084 9 C -0.119 4.119 10 C -0.110 4.110 11 C 0.033 3.967 12 F -0.151 7.151 13 C 0.515 3.485 14 O -0.569 6.569 15 N -0.588 5.588 16 C 0.240 3.760 17 C -0.552 4.552 18 H 0.050 0.950 19 C 0.034 3.966 20 N -0.911 5.911 21 Si 0.946 3.054 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.276 1.276 25 C 0.115 3.885 26 C 0.051 3.949 27 O -0.408 6.408 28 C 0.027 3.973 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.169 0.831 38 H 0.045 0.955 39 H 0.027 0.973 40 H 0.269 0.731 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 0.235 -6.005 7.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.014 3.986 4 H 0.129 0.871 5 O -0.220 6.220 6 C 0.031 3.969 7 C -0.210 4.210 8 C -0.102 4.102 9 C -0.137 4.137 10 C -0.128 4.128 11 C 0.013 3.987 12 F -0.130 7.130 13 C 0.302 3.698 14 O -0.449 6.449 15 N -0.320 5.320 16 C 0.120 3.880 17 C -0.591 4.591 18 H 0.068 0.932 19 C -0.168 4.168 20 N -0.549 5.549 21 Si 0.771 3.229 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.201 1.201 25 C -0.007 4.007 26 C -0.026 4.026 27 O -0.328 6.328 28 C -0.069 4.069 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.192 0.808 37 H 0.186 0.814 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.100 0.900 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.589 0.287 -6.692 8.120 hybrid contribution 0.520 0.254 0.905 1.074 sum -4.069 0.542 -5.787 7.095 Atomic orbital electron populations 1.21821 0.92874 1.03373 1.01900 1.21944 0.98677 0.92866 1.03293 1.22412 0.92818 0.96438 0.86965 0.87130 1.86169 1.39060 1.61942 1.34853 1.19445 0.88074 0.94536 0.94819 1.21482 0.98375 1.04591 0.96572 1.21414 0.94359 0.94197 1.00259 1.21366 1.01281 1.00481 0.90570 1.21356 0.91880 0.97688 1.01891 1.17476 0.95480 1.05477 0.80221 1.91440 1.78593 1.94984 1.47980 1.20331 0.89739 0.76630 0.83113 1.90614 1.64980 1.51006 1.38314 1.47988 1.07585 1.67663 1.08724 1.19403 0.90443 0.95754 0.82423 1.21622 1.32854 0.93719 1.10892 0.93166 1.25488 0.95236 0.98698 0.97352 1.69986 1.35156 1.25228 1.24529 0.85741 0.78947 0.80160 0.78038 1.19301 1.20681 1.20140 1.21544 0.79751 0.96495 1.02945 1.22979 1.00216 0.95054 0.84388 1.88057 1.79765 1.33640 1.31323 1.22861 0.98178 0.83618 1.02224 0.92923 0.90186 0.91892 0.91444 0.89392 0.84633 0.82589 0.80804 0.81365 0.93771 0.95539 0.92154 0.91137 0.87727 0.89984 0.93117 0.92507 0.93715 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.49 71.98 0.61 -3.66 16 2 C -0.13 -4.66 5.26 30.60 0.16 -4.50 16 3 C 0.07 2.99 1.73 29.84 0.05 3.04 16 4 H 0.11 4.66 4.29 -2.39 -0.01 4.65 16 5 O -0.31 -13.09 9.11 -74.70 -0.68 -13.77 16 6 C 0.08 2.78 5.41 22.53 0.12 2.90 16 7 C -0.19 -6.00 7.28 22.36 0.16 -5.84 16 8 C -0.08 -1.97 10.04 22.26 0.22 -1.75 16 9 C -0.12 -2.28 10.04 22.28 0.22 -2.05 16 10 C -0.11 -2.51 10.02 22.30 0.22 -2.28 16 11 C 0.03 1.08 7.31 22.45 0.16 1.24 16 12 F -0.15 -5.51 17.11 44.97 0.77 -4.74 16 13 C 0.51 23.68 6.74 87.65 0.59 24.27 16 14 O -0.57 -29.50 15.70 16.87 0.26 -29.23 16 15 N -0.59 -25.32 2.41 -826.17 -1.99 -27.31 16 16 C 0.24 10.91 4.73 85.64 0.40 11.31 16 17 C -0.55 -27.12 8.95 25.60 0.23 -26.89 16 18 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 19 C 0.03 1.66 5.46 84.65 0.46 2.12 16 20 N -0.91 -46.34 13.29 21.45 0.28 -46.06 16 21 Si 0.95 39.15 29.54 68.60 2.03 41.18 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 25 C 0.12 4.33 5.85 86.38 0.51 4.84 16 26 C 0.05 1.64 6.28 71.98 0.45 2.10 16 27 O -0.41 -14.84 10.01 -148.96 -1.49 -16.33 16 28 C 0.03 0.71 11.01 113.37 1.25 1.96 16 29 H 0.05 1.59 6.38 -2.39 -0.02 1.57 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.89 6.89 -2.39 -0.02 1.87 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.09 3.24 5.91 -2.39 -0.01 3.22 16 34 H 0.14 4.61 4.56 -2.91 -0.01 4.59 16 35 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.04 2.04 4.42 -2.39 -0.01 2.03 16 39 H 0.03 1.26 7.98 -2.39 -0.02 1.24 16 40 H 0.27 13.02 8.31 -92.70 -0.77 12.25 16 41 H 0.07 2.80 7.32 -2.39 -0.02 2.79 16 42 H 0.10 3.62 8.11 -2.39 -0.02 3.60 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 44 H 0.05 1.63 8.03 -2.38 -0.02 1.61 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -66.85 386.14 6.00 -60.85 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.99 Total: 28.60 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 5.84 Total: 6.82 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.71 Total: -73.37 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -1.91 Total: -59.34 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.77 Total: -4.74 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -66.85 6.00 -60.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591169134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.299 kcal (2) G-P(sol) polarization free energy of solvation -66.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds