Wall clock time and date at job start Tue Mar 31 2020 22:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47150 * 2 1 4 4 H 1.08996 * 109.46918 * 303.13552 * 3 2 1 5 5 O 1.42901 * 109.46884 * 63.13571 * 3 2 1 6 6 C 1.35957 * 116.99462 * 259.83105 * 5 3 2 7 7 C 1.38660 * 120.06586 * 5.57088 * 6 5 3 8 8 C 1.38180 * 119.96639 * 179.72228 * 7 6 5 9 9 C 1.38256 * 120.09943 * 0.54765 * 8 7 6 10 10 C 1.38253 * 120.12439 * 359.72365 * 9 8 7 11 11 C 1.38337 * 120.02927 * 359.97438 * 10 9 8 12 12 F 1.35100 * 120.04669 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46963 * 183.13194 * 3 2 1 14 14 O 1.21285 * 120.00151 * 254.41826 * 13 3 2 15 15 N 1.34777 * 119.99797 * 74.42559 * 13 3 2 16 16 C 1.46498 * 119.99714 * 185.11439 * 15 13 3 17 17 C 1.50705 * 109.47443 * 89.99749 * 16 15 13 18 18 H 1.07998 * 119.99723 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00256 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99903 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99970 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47039 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47086 * 119.99793 * 21 19 17 24 24 H 1.48499 * 109.46813 * 239.99426 * 21 19 17 25 25 C 1.46500 * 120.00267 * 5.10763 * 15 13 3 26 26 C 1.52994 * 109.46804 * 92.56803 * 25 15 13 27 27 O 1.42896 * 109.47460 * 65.00071 * 26 25 15 28 28 C 1.42896 * 114.00328 * 179.97438 * 27 26 25 29 29 H 1.08997 * 109.46858 * 299.99809 * 1 2 3 30 30 H 1.08997 * 109.47027 * 59.99746 * 1 2 3 31 31 H 1.08994 * 109.46710 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46858 * 240.00191 * 2 1 3 33 33 H 1.09003 * 109.47653 * 120.00002 * 2 1 3 34 34 H 1.07998 * 120.01415 * 359.96840 * 7 6 5 35 35 H 1.08001 * 119.95029 * 180.27365 * 8 7 6 36 36 H 1.08000 * 119.94195 * 179.74783 * 9 8 7 37 37 H 1.07998 * 119.98659 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.46979 * 209.99488 * 16 15 13 39 39 H 1.09002 * 109.47391 * 329.99597 * 16 15 13 40 40 H 0.97001 * 120.00092 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.47014 * 212.57049 * 25 15 13 42 42 H 1.09006 * 109.47349 * 332.56757 * 25 15 13 43 43 H 1.09007 * 109.46911 * 185.00430 * 26 25 15 44 44 H 1.09006 * 109.47500 * 304.99802 * 26 25 15 45 45 H 1.09000 * 109.47323 * 180.02562 * 28 27 26 46 46 H 1.09006 * 109.47300 * 300.00049 * 28 27 26 47 47 H 1.08998 * 109.47179 * 59.99817 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6315 1.9723 -0.8605 5 8 1.6248 2.0945 1.2019 6 6 0.5402 2.9101 1.1185 7 6 -0.1795 2.9901 -0.0640 8 6 -1.2849 3.8153 -0.1447 9 6 -1.6680 4.5701 0.9485 10 6 -0.9500 4.4976 2.1277 11 6 0.1539 3.6685 2.2163 12 9 0.8555 3.5970 3.3686 13 6 3.5451 1.4432 -0.0776 14 8 4.2030 1.7071 0.9065 15 7 4.1599 1.1507 -1.2407 16 6 5.6200 1.0412 -1.2901 17 6 6.0269 -0.3822 -1.0079 18 1 5.2733 -1.1303 -0.8111 19 6 7.3613 -0.7291 -1.0000 20 7 8.2790 0.1821 -1.2392 21 14 7.8656 -2.4932 -0.6496 22 1 6.6530 -3.3172 -0.4137 23 1 8.6139 -3.0345 -1.8125 24 1 8.7311 -2.5303 0.5566 25 6 3.3683 0.9420 -2.4556 26 6 3.2419 2.2640 -3.2153 27 8 4.5319 2.6768 -3.6709 28 6 4.5255 3.9075 -4.3970 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.1214 2.4048 -0.9202 35 1 -1.8479 3.8741 -1.0645 36 1 -2.5300 5.2172 0.8813 37 1 -1.2510 5.0885 2.9802 38 1 5.9728 1.3304 -2.2800 39 1 6.0593 1.6999 -0.5409 40 1 9.2178 -0.0620 -1.2340 41 1 3.8619 0.2048 -3.0888 42 1 2.3756 0.5820 -2.1851 43 1 2.5802 2.1295 -4.0710 44 1 2.8296 3.0255 -2.5533 45 1 5.5413 4.1511 -4.7082 46 1 3.8905 3.8067 -5.2773 47 1 4.1396 4.7033 -3.7599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591169135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:19 Heat of formation + Delta-G solvation = -125.330992 kcal Electronic energy + Delta-G solvation = -30964.880034 eV Core-core repulsion = 26642.615527 eV Total energy + Delta-G solvation = -4322.264507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.75000 -40.71614 -39.07218 -37.73219 -37.20050 -34.98148 -33.73916 -32.55423 -30.89470 -30.12034 -29.67518 -28.19360 -26.47352 -25.92145 -23.63401 -22.94865 -22.80080 -22.58410 -21.17972 -18.85440 -18.80149 -17.09582 -16.96463 -16.53386 -16.45102 -16.22989 -15.91259 -15.61939 -15.36691 -15.05517 -14.94462 -14.81345 -14.62664 -14.29127 -13.92894 -13.76780 -13.36392 -13.00730 -12.91475 -12.59540 -12.47666 -12.24206 -12.00728 -11.98318 -11.84728 -11.74471 -11.66590 -11.47102 -11.27888 -10.98248 -10.91655 -10.85504 -10.62348 -10.42859 -10.12307 -9.58054 -9.49147 -9.14966 -8.92939 -8.37028 -8.25197 -7.69288 -5.98264 -4.02829 0.91954 1.07616 2.79707 3.19802 3.32866 3.38693 3.40659 3.44026 3.88016 3.97814 4.14047 4.46855 4.48219 4.58240 4.63150 4.75568 4.80313 4.99736 5.01229 5.10641 5.21155 5.25373 5.32534 5.34598 5.37473 5.38883 5.46684 5.50284 5.55143 5.59098 5.73879 5.82891 5.84679 5.86131 5.95799 5.99182 6.10327 6.15284 6.20793 6.46715 7.08866 7.29996 7.34621 7.51951 7.60827 7.98974 8.29434 8.36589 8.89082 9.05240 9.61149 11.09839 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.003631 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.035534 B = 7708.699920 C = 8735.573758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.062 3.938 4 H 0.093 0.907 5 O -0.271 6.271 6 C 0.107 3.893 7 C -0.191 4.191 8 C -0.089 4.089 9 C -0.136 4.136 10 C -0.117 4.117 11 C 0.068 3.932 12 F -0.129 7.129 13 C 0.504 3.496 14 O -0.514 6.514 15 N -0.583 5.583 16 C 0.249 3.751 17 C -0.528 4.528 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.896 3.104 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.101 3.899 26 C 0.043 3.957 27 O -0.368 6.368 28 C 0.032 3.968 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.051 0.949 39 H 0.041 0.959 40 H 0.262 0.738 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.035 0.965 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.477 7.282 -4.330 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.003 3.997 4 H 0.110 0.890 5 O -0.183 6.183 6 C 0.059 3.941 7 C -0.209 4.209 8 C -0.107 4.107 9 C -0.155 4.155 10 C -0.136 4.136 11 C 0.048 3.952 12 F -0.108 7.108 13 C 0.288 3.712 14 O -0.389 6.389 15 N -0.316 5.316 16 C 0.131 3.869 17 C -0.567 4.567 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.724 3.276 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.023 4.023 26 C -0.035 4.035 27 O -0.286 6.286 28 C -0.065 4.065 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.054 0.946 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.555 7.282 -3.556 23.028 hybrid contribution 0.191 -0.784 0.017 0.807 sum -21.364 6.498 -3.539 22.609 Atomic orbital electron populations 1.21920 0.94785 1.02476 1.01949 1.22020 0.96666 0.94144 1.05035 1.22667 0.95158 0.94773 0.87144 0.88979 1.86331 1.41859 1.56574 1.33528 1.19190 0.89004 0.91989 0.93884 1.21295 0.98287 1.04032 0.97306 1.20977 0.95755 0.95117 0.98861 1.20884 1.00880 1.01206 0.92482 1.21022 0.94025 0.98632 0.99898 1.17048 0.94972 1.01090 0.82125 1.91533 1.77766 1.95270 1.46222 1.19912 0.87771 0.79135 0.84410 1.90721 1.66023 1.47034 1.35131 1.48119 1.10079 1.67709 1.05706 1.19395 0.71331 0.97068 0.99122 1.21490 0.92087 0.94625 1.48496 0.92515 1.24914 0.96385 0.97500 0.95221 1.69957 1.00707 1.33060 1.49317 0.86478 0.78550 0.84707 0.77866 1.19856 1.21012 1.20946 1.21718 0.96582 0.96098 0.87916 1.23108 0.86087 0.97183 0.97166 1.88119 1.28050 1.39220 1.73220 1.22717 1.02630 0.86535 0.94633 0.92275 0.92505 0.91792 0.89029 0.89631 0.84163 0.85135 0.85014 0.84193 0.93130 0.94115 0.92853 0.88460 0.89964 0.92831 0.93994 0.89627 0.94626 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.51 37.16 0.32 -1.23 16 2 C -0.14 -1.88 5.29 -26.73 -0.14 -2.02 16 3 C 0.06 0.99 1.69 -27.88 -0.05 0.94 16 4 H 0.09 1.16 4.18 -51.93 -0.22 0.94 16 5 O -0.27 -4.76 8.96 -39.09 -0.35 -5.11 16 6 C 0.11 1.51 5.62 -39.18 -0.22 1.29 16 7 C -0.19 -2.01 7.45 -39.45 -0.29 -2.30 16 8 C -0.09 -0.73 10.04 -39.60 -0.40 -1.13 16 9 C -0.14 -1.11 10.04 -39.57 -0.40 -1.50 16 10 C -0.12 -1.18 10.02 -39.54 -0.40 -1.58 16 11 C 0.07 0.94 7.31 -39.30 -0.29 0.65 16 12 F -0.13 -2.11 17.11 2.25 0.04 -2.07 16 13 C 0.50 10.83 6.97 -10.98 -0.08 10.76 16 14 O -0.51 -13.86 16.12 -13.93 -0.22 -14.09 16 15 N -0.58 -12.27 2.43 -175.06 -0.43 -12.70 16 16 C 0.25 6.63 5.02 -5.19 -0.03 6.60 16 17 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 18 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 21 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 25 C 0.10 1.56 5.30 -4.04 -0.02 1.53 16 26 C 0.04 0.58 6.22 37.15 0.23 0.81 16 27 O -0.37 -6.19 9.29 -35.23 -0.33 -6.52 16 28 C 0.03 0.40 11.01 101.05 1.11 1.51 16 29 H 0.06 0.66 6.63 -51.93 -0.34 0.31 16 30 H 0.06 0.45 6.71 -51.93 -0.35 0.10 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.12 6.24 -51.93 -0.32 0.80 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.14 1.25 4.39 -52.49 -0.23 1.02 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.05 1.39 6.89 -51.93 -0.36 1.03 16 39 H 0.04 1.25 7.36 -51.93 -0.38 0.87 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.10 1.57 8.09 -51.93 -0.42 1.15 16 42 H 0.08 0.95 4.58 -51.93 -0.24 0.71 16 43 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 44 H 0.04 0.55 7.87 -51.93 -0.41 0.14 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -36.66 385.45 -7.45 -44.11 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.62 Total: -0.95 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.07 Total: 0.67 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.31 Total: -38.88 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.90 Total: -25.72 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.66 -7.45 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591169135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.219 kcal (2) G-P(sol) polarization free energy of solvation -36.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds