Wall clock time and date at job start Tue Mar 31 2020 22:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47150 * 2 1 4 4 H 1.08996 * 109.46918 * 303.13552 * 3 2 1 5 5 O 1.42901 * 109.46884 * 63.13571 * 3 2 1 6 6 C 1.35957 * 116.99462 * 259.83105 * 5 3 2 7 7 C 1.38660 * 120.06586 * 5.57088 * 6 5 3 8 8 C 1.38180 * 119.96639 * 179.72228 * 7 6 5 9 9 C 1.38256 * 120.09943 * 0.54765 * 8 7 6 10 10 C 1.38253 * 120.12439 * 359.72365 * 9 8 7 11 11 C 1.38337 * 120.02927 * 359.97438 * 10 9 8 12 12 F 1.35100 * 120.04669 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46963 * 183.13194 * 3 2 1 14 14 O 1.21285 * 120.00151 * 254.41826 * 13 3 2 15 15 N 1.34777 * 119.99797 * 74.42559 * 13 3 2 16 16 C 1.46498 * 119.99714 * 185.11439 * 15 13 3 17 17 C 1.50705 * 109.47443 * 89.99749 * 16 15 13 18 18 H 1.07998 * 119.99723 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00256 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99903 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99970 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47039 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47086 * 119.99793 * 21 19 17 24 24 H 1.48499 * 109.46813 * 239.99426 * 21 19 17 25 25 C 1.46500 * 120.00267 * 5.10763 * 15 13 3 26 26 C 1.52994 * 109.46804 * 92.56803 * 25 15 13 27 27 O 1.42896 * 109.47460 * 65.00071 * 26 25 15 28 28 C 1.42896 * 114.00328 * 179.97438 * 27 26 25 29 29 H 1.08997 * 109.46858 * 299.99809 * 1 2 3 30 30 H 1.08997 * 109.47027 * 59.99746 * 1 2 3 31 31 H 1.08994 * 109.46710 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46858 * 240.00191 * 2 1 3 33 33 H 1.09003 * 109.47653 * 120.00002 * 2 1 3 34 34 H 1.07998 * 120.01415 * 359.96840 * 7 6 5 35 35 H 1.08001 * 119.95029 * 180.27365 * 8 7 6 36 36 H 1.08000 * 119.94195 * 179.74783 * 9 8 7 37 37 H 1.07998 * 119.98659 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.46979 * 209.99488 * 16 15 13 39 39 H 1.09002 * 109.47391 * 329.99597 * 16 15 13 40 40 H 0.97001 * 120.00092 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.47014 * 212.57049 * 25 15 13 42 42 H 1.09006 * 109.47349 * 332.56757 * 25 15 13 43 43 H 1.09007 * 109.46911 * 185.00430 * 26 25 15 44 44 H 1.09006 * 109.47500 * 304.99802 * 26 25 15 45 45 H 1.09000 * 109.47323 * 180.02562 * 28 27 26 46 46 H 1.09006 * 109.47300 * 300.00049 * 28 27 26 47 47 H 1.08998 * 109.47179 * 59.99817 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6315 1.9723 -0.8605 5 8 1.6248 2.0945 1.2019 6 6 0.5402 2.9101 1.1185 7 6 -0.1795 2.9901 -0.0640 8 6 -1.2849 3.8153 -0.1447 9 6 -1.6680 4.5701 0.9485 10 6 -0.9500 4.4976 2.1277 11 6 0.1539 3.6685 2.2163 12 9 0.8555 3.5970 3.3686 13 6 3.5451 1.4432 -0.0776 14 8 4.2030 1.7071 0.9065 15 7 4.1599 1.1507 -1.2407 16 6 5.6200 1.0412 -1.2901 17 6 6.0269 -0.3822 -1.0079 18 1 5.2733 -1.1303 -0.8111 19 6 7.3613 -0.7291 -1.0000 20 7 8.2790 0.1821 -1.2392 21 14 7.8656 -2.4932 -0.6496 22 1 6.6530 -3.3172 -0.4137 23 1 8.6139 -3.0345 -1.8125 24 1 8.7311 -2.5303 0.5566 25 6 3.3683 0.9420 -2.4556 26 6 3.2419 2.2640 -3.2153 27 8 4.5319 2.6768 -3.6709 28 6 4.5255 3.9075 -4.3970 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.1214 2.4048 -0.9202 35 1 -1.8479 3.8741 -1.0645 36 1 -2.5300 5.2172 0.8813 37 1 -1.2510 5.0885 2.9802 38 1 5.9728 1.3304 -2.2800 39 1 6.0593 1.6999 -0.5409 40 1 9.2178 -0.0620 -1.2340 41 1 3.8619 0.2048 -3.0888 42 1 2.3756 0.5820 -2.1851 43 1 2.5802 2.1295 -4.0710 44 1 2.8296 3.0255 -2.5533 45 1 5.5413 4.1511 -4.7082 46 1 3.8905 3.8067 -5.2773 47 1 4.1396 4.7033 -3.7599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591169135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:18 Heat of formation + Delta-G solvation = -149.920154 kcal Electronic energy + Delta-G solvation = -30965.946300 eV Core-core repulsion = 26642.615527 eV Total energy + Delta-G solvation = -4323.330773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.83552 -41.91524 -40.39961 -38.84018 -38.35511 -36.66747 -35.14714 -34.38576 -31.67931 -31.19809 -30.95658 -29.66745 -27.96800 -27.11088 -24.94093 -24.35671 -24.07676 -23.46384 -22.31346 -20.32005 -19.87452 -18.63827 -18.27986 -18.10434 -17.60043 -17.33303 -17.08676 -16.93836 -16.68766 -16.35248 -16.20099 -16.04243 -15.77341 -15.51093 -15.32855 -14.81208 -14.74132 -14.27918 -14.13373 -13.81674 -13.67837 -13.46883 -13.29351 -13.12366 -13.02314 -12.92237 -12.87447 -12.70225 -12.63111 -12.57287 -12.33554 -12.19921 -12.02891 -11.88736 -11.67763 -11.58631 -10.65594 -10.62764 -10.53509 -9.90395 -9.50662 -9.20733 -8.20658 -6.35506 0.14606 0.26523 1.35296 1.38620 1.49504 1.57086 1.63293 2.36152 2.51476 2.62880 2.93690 3.09455 3.25972 3.34849 3.46301 3.67534 3.80686 3.95635 4.11616 4.12250 4.22307 4.29041 4.33863 4.34409 4.37887 4.45989 4.52837 4.54663 4.60442 4.72642 4.86930 4.89153 4.95019 5.02666 5.10069 5.12054 5.14797 5.27716 5.28310 5.32480 5.44087 5.53581 5.71160 5.83527 6.07387 6.24073 6.33415 6.67185 6.74935 7.23135 7.38478 8.87214 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.003631 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.035534 B = 7708.699920 C = 8735.573758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.079 3.921 4 H 0.131 0.869 5 O -0.313 6.313 6 C 0.072 3.928 7 C -0.188 4.188 8 C -0.074 4.074 9 C -0.123 4.123 10 C -0.116 4.116 11 C 0.021 3.979 12 F -0.159 7.159 13 C 0.490 3.510 14 O -0.589 6.589 15 N -0.584 5.584 16 C 0.270 3.730 17 C -0.543 4.543 18 H 0.058 0.942 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.263 1.263 23 H -0.268 1.268 24 H -0.285 1.285 25 C 0.092 3.908 26 C 0.041 3.959 27 O -0.417 6.417 28 C 0.028 3.972 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.161 0.839 35 H 0.175 0.825 36 H 0.172 0.828 37 H 0.157 0.843 38 H 0.037 0.963 39 H -0.017 1.017 40 H 0.266 0.734 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.005 6.936 -7.218 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.020 3.980 4 H 0.149 0.851 5 O -0.226 6.226 6 C 0.026 3.974 7 C -0.206 4.206 8 C -0.092 4.092 9 C -0.141 4.141 10 C -0.134 4.134 11 C 0.002 3.998 12 F -0.138 7.138 13 C 0.278 3.722 14 O -0.469 6.469 15 N -0.315 5.315 16 C 0.149 3.851 17 C -0.582 4.582 18 H 0.076 0.924 19 C -0.193 4.193 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.187 1.187 23 H -0.193 1.193 24 H -0.211 1.211 25 C -0.030 4.030 26 C -0.036 4.036 27 O -0.336 6.336 28 C -0.068 4.068 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.178 0.822 35 H 0.192 0.808 36 H 0.189 0.811 37 H 0.175 0.825 38 H 0.055 0.945 39 H 0.001 0.999 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.146 0.854 43 H 0.122 0.878 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -26.147 6.941 -6.500 27.823 hybrid contribution 1.510 -0.532 0.886 1.830 sum -24.637 6.409 -5.613 26.069 Atomic orbital electron populations 1.21888 0.91467 1.03891 1.02912 1.22063 0.99399 0.92030 1.04148 1.22551 0.90166 0.96857 0.88429 0.85145 1.86272 1.43998 1.57947 1.34414 1.19563 0.89255 0.92845 0.95754 1.21561 0.98439 1.04488 0.96121 1.21521 0.94417 0.92918 1.00352 1.21424 1.00924 1.00536 0.91177 1.21356 0.92737 0.97603 1.01716 1.17724 0.96857 1.03513 0.81714 1.91443 1.78800 1.95714 1.47868 1.21101 0.90629 0.77310 0.83190 1.90670 1.68306 1.50294 1.37633 1.48053 1.08421 1.67056 1.08005 1.18723 0.75084 0.95121 0.96145 1.21788 0.92575 0.95299 1.48525 0.92417 1.25894 0.96379 1.02310 0.94758 1.70094 1.01163 1.35475 1.50109 0.85351 0.78394 0.79042 0.77903 1.18718 1.19260 1.21145 1.22179 0.97626 0.97696 0.85536 1.23240 0.85757 0.95777 0.98808 1.88056 1.30392 1.40998 1.74169 1.22858 1.03172 0.85239 0.95540 0.93649 0.89106 0.90177 0.87628 0.92875 0.82216 0.80760 0.81078 0.82487 0.94474 0.99898 0.92550 0.89360 0.85419 0.87786 0.93473 0.90302 0.91406 0.94055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.51 71.98 0.61 -1.82 16 2 C -0.14 -3.55 5.29 30.60 0.16 -3.39 16 3 C 0.08 2.49 1.69 29.85 0.05 2.54 16 4 H 0.13 2.93 4.18 -2.39 -0.01 2.92 16 5 O -0.31 -11.49 8.96 -74.44 -0.67 -12.16 16 6 C 0.07 2.01 5.62 22.53 0.13 2.14 16 7 C -0.19 -3.27 7.45 22.36 0.17 -3.10 16 8 C -0.07 -0.81 10.04 22.26 0.22 -0.59 16 9 C -0.12 -1.41 10.04 22.28 0.22 -1.19 16 10 C -0.12 -2.12 10.02 22.30 0.22 -1.90 16 11 C 0.02 0.61 7.31 22.45 0.16 0.78 16 12 F -0.16 -5.68 17.11 44.97 0.77 -4.91 16 13 C 0.49 22.27 6.97 87.66 0.61 22.88 16 14 O -0.59 -34.73 16.12 15.59 0.25 -34.47 16 15 N -0.58 -25.55 2.43 -826.15 -2.01 -27.56 16 16 C 0.27 15.37 5.02 85.64 0.43 15.80 16 17 C -0.54 -32.30 9.39 25.60 0.24 -32.06 16 18 H 0.06 3.33 7.81 -2.91 -0.02 3.30 16 19 C 0.01 0.32 5.46 84.65 0.46 0.78 16 20 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 21 Si 0.97 46.21 29.54 68.60 2.03 48.24 16 22 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 C 0.09 2.68 5.30 86.38 0.46 3.14 16 26 C 0.04 1.01 6.22 71.98 0.45 1.46 16 27 O -0.42 -13.88 9.29 -148.98 -1.38 -15.26 16 28 C 0.03 0.67 11.01 113.37 1.25 1.92 16 29 H 0.04 0.92 6.63 -2.39 -0.02 0.90 16 30 H 0.09 0.91 6.71 -2.39 -0.02 0.90 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 2.34 6.24 -2.39 -0.01 2.32 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.16 1.98 4.39 -2.91 -0.01 1.97 16 35 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 36 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 37 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.04 2.19 6.89 -2.39 -0.02 2.17 16 39 H -0.02 -1.16 7.36 -2.39 -0.02 -1.18 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.09 2.77 8.09 -2.39 -0.02 2.75 16 42 H 0.13 2.49 4.58 -2.38 -0.01 2.47 16 43 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.05 1.10 7.87 -2.38 -0.02 1.08 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -92.58 385.45 6.11 -86.47 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.99 Total: 10.48 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 5.85 Total: 7.39 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.72 Total: -85.77 kcal Atomic # 8 Polarization: -60.10 SS G_CDS: -1.80 Total: -61.90 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.77 Total: -4.91 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -92.58 6.11 -86.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591169135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.449 kcal (2) G-P(sol) polarization free energy of solvation -92.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds