Wall clock time and date at job start Wed Apr 1 2020 00:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00063 * 2 1 4 4 C 1.53003 * 109.47011 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47344 * 64.99664 * 4 3 2 6 6 C 1.46496 * 120.00314 * 270.00109 * 5 4 3 7 7 C 1.50700 * 109.47066 * 270.00247 * 6 5 4 8 8 H 1.07997 * 120.00471 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99964 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99771 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00012 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47170 * 89.99594 * 11 9 7 13 13 H 1.48495 * 109.46985 * 209.99934 * 11 9 7 14 14 H 1.48506 * 109.47264 * 329.99912 * 11 9 7 15 15 C 1.38991 * 119.99939 * 90.00066 * 5 4 3 16 16 C 1.39031 * 119.67076 * 5.00156 * 15 5 4 17 17 C 1.38457 * 119.21956 * 179.97438 * 16 15 5 18 18 C 1.38634 * 118.56709 * 0.27814 * 17 16 15 19 19 N 1.48008 * 120.35590 * 179.70278 * 18 17 16 20 20 O 1.21794 * 120.00370 * 359.97438 * 19 18 17 21 21 O 1.21801 * 119.99630 * 179.97438 * 19 18 17 22 22 C 1.38736 * 119.27731 * 359.42743 * 18 17 16 23 23 O 1.35677 * 119.63468 * 180.29806 * 22 18 17 24 24 C 1.42898 * 116.99975 * 180.27960 * 23 22 18 25 25 C 1.53000 * 109.47167 * 150.00216 * 24 23 22 26 26 C 1.52997 * 109.47352 * 270.00651 * 24 23 22 27 27 N 1.32347 * 120.72293 * 0.58553 * 22 18 17 28 28 H 1.09001 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47294 * 300.00016 * 1 2 3 30 30 H 1.09003 * 109.47176 * 60.00071 * 1 2 3 31 31 H 1.09001 * 109.47302 * 60.00020 * 3 2 1 32 32 H 1.08998 * 109.46891 * 299.99660 * 3 2 1 33 33 H 1.09003 * 109.46776 * 304.99773 * 4 3 2 34 34 H 1.08997 * 109.47012 * 185.00114 * 4 3 2 35 35 H 1.09003 * 109.47016 * 29.99689 * 6 5 4 36 36 H 1.09003 * 109.47496 * 150.00111 * 6 5 4 37 37 H 0.97001 * 119.99659 * 179.97438 * 10 9 7 38 38 H 1.07998 * 120.38757 * 0.02562 * 16 15 5 39 39 H 1.08002 * 120.71104 * 179.97438 * 17 16 15 40 40 H 1.09004 * 109.46872 * 30.00262 * 24 23 22 41 41 H 1.08996 * 109.46895 * 60.00268 * 25 24 23 42 42 H 1.09003 * 109.46574 * 180.02562 * 25 24 23 43 43 H 1.08992 * 109.47043 * 300.00020 * 25 24 23 44 44 H 1.09004 * 109.46814 * 299.99646 * 26 24 23 45 45 H 1.09003 * 109.47535 * 59.99867 * 26 24 23 46 46 H 1.09002 * 109.47643 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2526 6 6 4.1052 -0.8921 -1.3427 7 6 5.5009 -1.2979 -0.9447 8 1 6.2198 -0.5461 -0.6543 9 6 5.8602 -2.6291 -0.9515 10 7 7.0785 -2.9831 -0.6047 11 14 4.6168 -3.9296 -1.4532 12 1 4.7009 -4.1557 -2.9185 13 1 4.9113 -5.1977 -0.7389 14 1 3.2495 -3.4692 -1.1011 15 6 4.2705 1.3576 -2.3552 16 6 4.2464 2.7424 -2.2329 17 6 4.5421 3.5237 -3.3370 18 6 4.8476 2.8926 -4.5330 19 7 5.1634 3.6893 -5.7397 20 8 5.1553 4.9060 -5.6856 21 8 5.4313 3.1281 -6.7870 22 6 4.8597 1.5063 -4.5849 23 8 5.1636 0.8812 -5.7501 24 6 5.1535 -0.5477 -5.7416 25 6 4.7711 -1.0634 -7.1304 26 6 6.5445 -1.0655 -5.3704 27 7 4.5725 0.7870 -3.5117 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9785 2.1764 0.0889 35 1 3.3852 -1.3630 -0.6733 36 1 3.9120 -1.2115 -2.3668 37 1 7.3311 -3.9196 -0.6091 38 1 4.0008 3.2031 -1.2875 39 1 4.5302 4.6015 -3.2692 40 1 4.4270 -0.9015 -5.0099 41 1 5.4976 -0.7096 -7.8619 42 1 4.7629 -2.1533 -7.1237 43 1 3.7801 -0.6946 -7.3947 44 1 7.2710 -0.7117 -6.1020 45 1 6.8169 -0.6982 -4.3809 46 1 6.5369 -2.1555 -5.3643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594562894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:56 Heat of formation + Delta-G solvation = -56.459340 kcal Electronic energy + Delta-G solvation = -31258.457229 eV Core-core repulsion = 26959.099183 eV Total energy + Delta-G solvation = -4299.358046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.10026 -41.84246 -40.12302 -38.91605 -37.43391 -37.34780 -34.84128 -34.22224 -33.99435 -31.77775 -31.35010 -29.27290 -28.24192 -27.33745 -26.64636 -25.43762 -24.32962 -23.86159 -22.31240 -22.07985 -20.41186 -19.65966 -19.30832 -19.11485 -18.47820 -18.23081 -17.56710 -17.17184 -16.81619 -16.74106 -16.50519 -15.90876 -15.80811 -15.32381 -15.20187 -14.89442 -14.73483 -14.42290 -14.23027 -13.73526 -13.71391 -13.37822 -13.31469 -13.18258 -12.95906 -12.83907 -12.78675 -12.50819 -12.46967 -12.21150 -12.13123 -12.08303 -12.03244 -11.94524 -11.87704 -11.73079 -11.51141 -10.87212 -10.78419 -10.60446 -10.31278 -8.81559 -8.32691 -6.36391 -0.92701 0.07490 0.48968 0.60073 1.32311 1.33596 1.43442 1.59378 1.89430 2.29934 2.45538 2.89135 3.03460 3.16464 3.42851 3.61535 3.79485 3.85395 3.94311 4.07277 4.14052 4.19882 4.34746 4.42021 4.46929 4.51388 4.57187 4.61801 4.64132 4.73580 4.75487 4.79562 4.83962 4.86339 4.91083 4.99095 5.07843 5.13755 5.20497 5.44792 5.46225 5.63947 5.96763 6.08395 6.26404 6.35248 6.64233 6.77008 6.82199 7.26869 8.83489 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.005190 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.768582 B = 5393.192077 C = 7285.790240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.417 6.417 3 C 0.046 3.954 4 C 0.108 3.892 5 N -0.553 5.553 6 C 0.239 3.761 7 C -0.525 4.525 8 H 0.031 0.969 9 C 0.023 3.977 10 N -0.942 5.942 11 Si 0.931 3.069 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.246 1.246 15 C 0.469 3.531 16 C -0.261 4.261 17 C 0.059 3.941 18 C -0.215 4.215 19 N 0.063 4.937 20 O -0.191 6.191 21 O -0.206 6.206 22 C 0.430 3.570 23 O -0.282 6.282 24 C 0.075 3.925 25 C -0.139 4.139 26 C -0.159 4.159 27 N -0.598 5.598 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.046 0.954 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.194 0.806 39 H 0.196 0.804 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.032 0.968 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.013 9.375 -1.309 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.337 6.337 3 C -0.032 4.032 4 C -0.014 4.014 5 N -0.255 5.255 6 C 0.116 3.884 7 C -0.563 4.563 8 H 0.050 0.950 9 C -0.175 4.175 10 N -0.582 5.582 11 Si 0.754 3.246 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.169 1.169 15 C 0.229 3.771 16 C -0.285 4.285 17 C 0.034 3.966 18 C -0.308 4.308 19 N 0.569 4.431 20 O -0.401 6.401 21 O -0.412 6.412 22 C 0.243 3.757 23 O -0.186 6.186 24 C 0.019 3.981 25 C -0.196 4.196 26 C -0.217 4.217 27 N -0.334 5.334 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.147 0.853 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.211 0.789 39 H 0.213 0.787 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.051 0.949 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.915 7.728 -0.864 15.076 hybrid contribution 0.157 -0.105 -0.263 0.324 sum -12.758 7.623 -1.127 14.905 Atomic orbital electron populations 1.22850 0.79876 1.03187 1.00829 1.87976 1.21197 1.28903 1.95592 1.23170 0.92659 0.84967 1.02356 1.22097 0.93519 1.01019 0.84733 1.47152 1.62625 1.06893 1.08801 1.19397 0.95121 0.76489 0.97356 1.21439 0.96991 0.92678 1.45236 0.95046 1.25600 0.96741 1.00593 0.94609 1.70035 1.20338 1.17930 1.49886 0.85962 0.80723 0.78735 0.79145 1.19227 1.20861 1.16924 1.18747 0.83907 0.89169 0.85319 1.21647 1.14677 0.90060 1.02149 1.21275 0.85708 1.03017 0.86647 1.21000 1.32022 0.88267 0.89497 1.43228 0.96881 1.00768 1.02216 1.94408 1.57651 0.96277 1.91719 1.94555 1.53805 1.73837 1.18958 1.19167 0.84019 0.86758 0.85746 1.86574 1.80704 1.24139 1.27174 1.22642 0.98665 0.75960 1.00831 1.21878 1.02674 1.02096 0.92951 1.22108 0.96483 1.02178 1.00907 1.67119 1.28062 1.38680 0.99556 0.89849 0.92106 0.93825 0.88643 0.92459 0.89542 0.85260 0.93572 0.95342 0.92473 0.78921 0.78685 0.90552 0.90699 0.88590 0.91417 0.91027 0.94904 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.42 -11.01 9.53 -148.98 -1.42 -12.43 16 3 C 0.05 0.89 6.28 71.98 0.45 1.35 16 4 C 0.11 2.63 5.65 86.38 0.49 3.12 16 5 N -0.55 -19.11 2.53 -708.31 -1.80 -20.91 16 6 C 0.24 10.44 4.11 85.63 0.35 10.79 16 7 C -0.52 -28.12 9.94 25.60 0.25 -27.87 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 9 C 0.02 1.28 5.47 84.66 0.46 1.74 16 10 N -0.94 -56.50 13.96 21.45 0.30 -56.20 16 11 Si 0.93 42.00 27.47 68.60 1.88 43.89 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 15 C 0.47 15.73 7.37 133.02 0.98 16.72 16 16 C -0.26 -6.25 9.27 22.51 0.21 -6.04 16 17 C 0.06 1.45 9.66 22.42 0.22 1.67 16 18 C -0.21 -7.16 6.89 36.59 0.25 -6.91 16 19 N 0.06 2.26 4.45 -45.96 -0.20 2.05 16 20 O -0.19 -6.46 18.52 18.89 0.35 -6.11 16 21 O -0.21 -8.10 17.26 25.60 0.44 -7.66 16 22 C 0.43 15.99 7.44 84.73 0.63 16.62 16 23 O -0.28 -10.45 7.78 -68.82 -0.54 -10.98 16 24 C 0.07 2.50 3.11 30.59 0.10 2.59 16 25 C -0.14 -3.49 9.56 71.98 0.69 -2.80 16 26 C -0.16 -5.58 9.53 71.98 0.69 -4.89 16 27 N -0.60 -23.02 7.35 -306.32 -2.25 -25.27 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 34 H 0.13 2.11 5.97 -2.39 -0.01 2.10 16 35 H 0.05 2.04 6.17 -2.39 -0.01 2.02 16 36 H 0.03 1.32 6.73 -2.39 -0.02 1.30 16 37 H 0.27 15.03 8.31 -92.71 -0.77 14.25 16 38 H 0.19 2.80 6.01 -2.91 -0.02 2.79 16 39 H 0.20 3.39 7.69 -2.91 -0.02 3.36 16 40 H 0.08 2.81 6.98 -2.38 -0.02 2.79 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 45 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -73.43 388.45 4.72 -68.71 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.94 Total: 17.05 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 7.02 Total: 7.86 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -3.95 Total: -100.33 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -1.16 Total: -37.19 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.89 kcal Total: -73.43 4.72 -68.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594562894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.254 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds