Wall clock time and date at job start Tue Mar 31 2020 22:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47242 * 2 1 4 4 C 1.53003 * 109.46563 * 119.99777 * 2 1 3 5 5 N 1.46493 * 109.47417 * 305.00036 * 4 2 1 6 6 C 1.34780 * 120.00228 * 180.02562 * 5 4 2 7 7 O 1.21586 * 119.99906 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00048 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00071 * 180.02562 * 8 6 5 10 10 C 1.53050 * 109.45836 * 275.02339 * 9 8 6 11 11 C 1.53192 * 109.31261 * 178.59838 * 10 9 8 12 12 N 1.46927 * 108.76390 * 54.65468 * 11 10 9 13 13 C 1.36940 * 120.63164 * 126.40435 * 12 11 10 14 14 H 1.08005 * 119.99734 * 332.61257 * 13 12 11 15 15 C 1.38807 * 120.00227 * 152.60992 * 13 12 11 16 16 N 1.31614 * 120.00198 * 159.34825 * 15 13 12 17 17 Si 1.86795 * 119.99920 * 339.34178 * 15 13 12 18 18 H 1.48504 * 109.46989 * 92.94727 * 17 15 13 19 19 H 1.48505 * 109.47321 * 212.94462 * 17 15 13 20 20 H 1.48499 * 109.47311 * 332.94718 * 17 15 13 21 21 C 1.46927 * 118.74133 * 306.38270 * 12 11 10 22 22 C 1.53039 * 109.46376 * 154.96753 * 9 8 6 23 23 C 1.52998 * 109.47179 * 239.99538 * 2 1 3 24 24 F 1.39900 * 109.46892 * 180.02562 * 23 2 1 25 25 F 1.39902 * 109.46916 * 60.00424 * 23 2 1 26 26 F 1.39895 * 109.47513 * 300.00231 * 23 2 1 27 27 H 1.08999 * 109.47239 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47319 * 300.00268 * 1 2 3 29 29 H 1.09003 * 109.46759 * 60.00343 * 1 2 3 30 30 H 0.96697 * 114.00200 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47412 * 65.00510 * 4 2 1 32 32 H 1.08999 * 109.46832 * 185.00063 * 4 2 1 33 33 H 0.97000 * 120.00029 * 0.02562 * 5 4 2 34 34 H 0.97000 * 119.99660 * 359.97438 * 8 6 5 35 35 H 1.09005 * 109.46268 * 34.99299 * 9 8 6 36 36 H 1.08996 * 109.49767 * 298.56509 * 10 9 8 37 37 H 1.08998 * 109.49116 * 58.66266 * 10 9 8 38 38 H 1.08996 * 109.59813 * 294.87249 * 11 10 9 39 39 H 1.08996 * 109.70276 * 174.50551 * 11 10 9 40 40 H 0.97004 * 120.00502 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.58715 * 293.82414 * 21 12 11 42 42 H 1.08997 * 109.70420 * 173.46371 * 21 12 11 43 43 H 1.08997 * 109.49887 * 301.33793 * 22 9 8 44 44 H 1.09005 * 109.49592 * 61.39924 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.4557 -0.1036 2.4424 6 6 1.7645 -0.5768 3.6660 7 8 2.5276 -1.5165 3.7797 8 7 1.2267 -0.0089 4.7636 9 6 1.5627 -0.5228 6.0937 10 6 0.6454 -1.7003 6.4320 11 6 1.0228 -2.2572 7.8083 12 7 0.9853 -1.1626 8.7877 13 6 0.2424 -1.2756 9.9324 14 1 -0.6318 -1.9098 9.9484 15 6 0.6127 -0.5753 11.0722 16 7 -0.2714 -0.3453 12.0196 17 14 2.3660 0.0405 11.2615 18 1 2.4592 1.4327 10.7532 19 1 2.7491 0.0107 12.6960 20 1 3.2837 -0.8321 10.4859 21 6 1.7605 0.0555 8.5157 22 6 1.3752 0.5864 7.1313 23 6 2.0400 -0.7213 -1.2492 24 9 3.4390 -0.7218 -1.2488 25 9 1.5738 -0.0618 -2.3915 26 9 1.5737 -2.0403 -1.2492 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 2.9703 1.4236 0.0004 31 1 1.7516 -1.7716 1.2057 32 1 3.1262 -0.6443 1.2953 33 1 0.8467 0.6458 2.3517 34 1 0.6176 0.7406 4.6729 35 1 2.6004 -0.8566 6.1025 36 1 -0.3904 -1.3616 6.4479 37 1 0.7623 -2.4802 5.6796 38 1 2.0273 -2.6784 7.7694 39 1 0.3128 -3.0317 8.0986 40 1 -0.0126 0.1437 12.8164 41 1 2.8252 -0.1771 8.5344 42 1 1.5378 0.8092 9.2710 43 1 2.0113 1.4341 6.8767 44 1 0.3324 0.9038 7.1401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614265310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:04 Heat of formation + Delta-G solvation = -206.206310 kcal Electronic energy + Delta-G solvation = -30548.223380 eV Core-core repulsion = 25700.515077 eV Total energy + Delta-G solvation = -4847.708303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.70393 -48.21183 -48.14976 -40.37772 -38.92129 -37.69403 -34.90746 -34.50860 -32.53787 -31.88552 -30.44511 -29.99464 -27.65915 -26.37624 -24.72244 -22.95331 -22.08230 -21.61778 -20.95196 -19.75216 -19.31635 -19.11229 -18.94024 -18.43598 -17.01954 -16.41555 -16.20547 -16.05372 -15.27409 -15.17604 -15.01453 -14.73236 -14.60293 -14.54160 -14.39012 -14.31134 -14.24389 -14.15246 -13.87661 -13.80647 -13.43999 -13.14809 -13.00467 -12.91665 -12.61698 -12.38400 -11.99180 -11.90617 -11.79249 -11.10918 -11.00530 -10.83228 -10.56359 -10.31524 -10.28859 -10.06910 -9.77997 -9.50482 -9.42667 -8.76180 -8.64528 -7.00266 -5.96083 -3.31914 1.87785 2.51655 2.99538 3.11605 3.17015 3.28296 3.30139 3.48411 3.51740 3.56689 3.92542 4.10206 4.16510 4.51828 4.87488 4.94179 4.95218 5.01743 5.08905 5.16398 5.32956 5.39325 5.39665 5.66116 5.81557 6.03143 6.07459 6.09105 6.14765 6.29248 6.40242 6.55979 6.56346 6.63313 6.64484 6.70017 6.81530 6.97345 7.92720 7.95023 8.31860 8.54179 8.92780 9.70776 10.08367 11.19893 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.032736 B = 0.002121 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.111311 B =13197.552845 C =13292.772974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.087 3.913 3 O -0.525 6.525 4 C 0.115 3.885 5 N -0.743 5.743 6 C 0.704 3.296 7 O -0.587 6.587 8 N -0.736 5.736 9 C 0.168 3.832 10 C -0.141 4.141 11 C 0.151 3.849 12 N -0.606 5.606 13 C -0.259 4.259 14 H 0.086 0.914 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 0.881 3.119 18 H -0.289 1.289 19 H -0.303 1.303 20 H -0.270 1.270 21 C 0.129 3.871 22 C -0.140 4.140 23 C 0.430 3.570 24 F -0.180 7.180 25 F -0.172 7.172 26 F -0.174 7.174 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.391 0.609 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.400 0.600 34 H 0.393 0.607 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.066 0.934 40 H 0.262 0.738 41 H 0.028 0.972 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 3.609 -28.613 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.043 3.957 3 O -0.332 6.332 4 C -0.011 4.011 5 N -0.402 5.402 6 C 0.404 3.596 7 O -0.465 6.465 8 N -0.389 5.389 9 C 0.064 3.936 10 C -0.182 4.182 11 C 0.024 3.976 12 N -0.330 5.330 13 C -0.387 4.387 14 H 0.104 0.896 15 C -0.176 4.176 16 N -0.552 5.552 17 Si 0.712 3.288 18 H -0.216 1.216 19 H -0.231 1.231 20 H -0.195 1.195 21 C 0.003 3.997 22 C -0.180 4.180 23 C 0.375 3.625 24 F -0.162 7.162 25 F -0.153 7.153 26 F -0.155 7.155 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.241 0.759 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.235 0.765 34 H 0.227 0.773 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.888 2.885 -28.328 28.621 hybrid contribution 1.138 0.910 -0.220 1.474 sum 4.025 3.795 -28.548 29.080 Atomic orbital electron populations 1.21897 0.88383 1.04875 1.05370 1.22614 0.98828 0.84208 0.90045 1.86691 1.28467 1.21916 1.96131 1.21665 0.99242 0.97840 0.82373 1.44857 1.52763 1.38593 1.03954 1.15916 0.80977 0.82515 0.80169 1.90946 1.39880 1.30039 1.85632 1.45447 1.50717 1.37336 1.05448 1.20890 0.99814 0.94337 0.78516 1.22399 0.99518 0.97381 0.98877 1.20899 0.98747 0.90631 0.87309 1.44412 1.55701 1.11616 1.21279 1.18932 1.04927 1.28065 0.86795 0.89631 1.25285 0.97503 0.99166 0.95692 1.69834 1.33042 1.42294 1.09983 0.86974 0.87633 0.78206 0.76001 1.21641 1.23129 1.19456 1.21303 0.94457 0.90035 0.93898 1.22355 1.02284 0.96771 0.96586 1.21286 0.75880 0.78286 0.87088 1.93208 1.29811 1.96323 1.96814 1.93217 1.88268 1.80576 1.53248 1.93220 1.88310 1.37228 1.96737 0.89097 0.89300 0.89887 0.75885 0.89237 0.89948 0.76469 0.77341 0.89886 0.91909 0.92212 0.95676 0.91594 0.92768 0.95456 0.90495 0.92256 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.37 37.16 0.31 -0.42 16 2 C 0.09 0.52 0.58 -90.62 -0.05 0.46 16 3 O -0.53 -2.94 12.87 -35.23 -0.45 -3.39 16 4 C 0.11 0.89 4.57 -4.04 -0.02 0.87 16 5 N -0.74 -6.40 5.19 -65.23 -0.34 -6.74 16 6 C 0.70 9.15 8.53 -86.91 -0.74 8.41 16 7 O -0.59 -10.18 16.01 5.29 0.08 -10.09 16 8 N -0.74 -9.02 5.08 -58.63 -0.30 -9.32 16 9 C 0.17 2.64 2.42 -67.89 -0.16 2.47 16 10 C -0.14 -2.38 5.65 -26.61 -0.15 -2.53 16 11 C 0.15 3.00 6.52 -3.71 -0.02 2.97 16 12 N -0.61 -14.17 2.77 -172.32 -0.48 -14.65 16 13 C -0.26 -7.14 10.03 -15.06 -0.15 -7.29 16 14 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 15 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 16 N -0.91 -27.56 13.97 55.49 0.78 -26.79 16 17 Si 0.88 22.11 24.35 -169.99 -4.14 17.98 16 18 H -0.29 -6.91 6.62 56.52 0.37 -6.54 16 19 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 20 H -0.27 -6.69 6.63 56.52 0.37 -6.32 16 21 C 0.13 2.73 4.20 -3.71 -0.02 2.72 16 22 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 23 C 0.43 3.02 2.38 37.16 0.09 3.11 16 24 F -0.18 -1.34 16.51 2.25 0.04 -1.30 16 25 F -0.17 -1.34 16.74 2.25 0.04 -1.30 16 26 F -0.17 -1.36 16.19 2.25 0.04 -1.32 16 27 H 0.09 0.41 7.80 -51.93 -0.41 0.01 16 28 H 0.09 0.37 6.57 -51.93 -0.34 0.03 16 29 H 0.08 0.40 7.80 -51.93 -0.41 -0.01 16 30 H 0.39 1.21 8.69 45.56 0.40 1.61 16 31 H 0.09 0.78 7.66 -51.93 -0.40 0.38 16 32 H 0.08 0.68 7.94 -51.93 -0.41 0.27 16 33 H 0.40 2.51 7.00 -40.82 -0.29 2.23 16 34 H 0.39 3.70 8.62 -40.82 -0.35 3.35 16 35 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 41 H 0.03 0.58 7.08 -51.93 -0.37 0.21 16 42 H 0.08 1.77 4.50 -51.93 -0.23 1.54 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -33.72 360.32 -5.80 -39.52 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.34 Total: 3.11 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.16 Total: 8.88 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.34 Total: -57.50 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.37 Total: -13.49 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.11 Total: -3.93 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.72 -5.80 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614265310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.691 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds