Wall clock time and date at job start Tue Mar 31 2020 22:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47242 * 2 1 4 4 C 1.53003 * 109.46563 * 119.99777 * 2 1 3 5 5 N 1.46493 * 109.47417 * 305.00036 * 4 2 1 6 6 C 1.34780 * 120.00228 * 180.02562 * 5 4 2 7 7 O 1.21586 * 119.99906 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00048 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00071 * 180.02562 * 8 6 5 10 10 C 1.53050 * 109.45836 * 275.02339 * 9 8 6 11 11 C 1.53192 * 109.31261 * 178.59838 * 10 9 8 12 12 N 1.46927 * 108.76390 * 54.65468 * 11 10 9 13 13 C 1.36940 * 120.63164 * 126.40435 * 12 11 10 14 14 H 1.08005 * 119.99734 * 332.61257 * 13 12 11 15 15 C 1.38807 * 120.00227 * 152.60992 * 13 12 11 16 16 N 1.31614 * 120.00198 * 159.34825 * 15 13 12 17 17 Si 1.86795 * 119.99920 * 339.34178 * 15 13 12 18 18 H 1.48504 * 109.46989 * 92.94727 * 17 15 13 19 19 H 1.48505 * 109.47321 * 212.94462 * 17 15 13 20 20 H 1.48499 * 109.47311 * 332.94718 * 17 15 13 21 21 C 1.46927 * 118.74133 * 306.38270 * 12 11 10 22 22 C 1.53039 * 109.46376 * 154.96753 * 9 8 6 23 23 C 1.52998 * 109.47179 * 239.99538 * 2 1 3 24 24 F 1.39900 * 109.46892 * 180.02562 * 23 2 1 25 25 F 1.39902 * 109.46916 * 60.00424 * 23 2 1 26 26 F 1.39895 * 109.47513 * 300.00231 * 23 2 1 27 27 H 1.08999 * 109.47239 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47319 * 300.00268 * 1 2 3 29 29 H 1.09003 * 109.46759 * 60.00343 * 1 2 3 30 30 H 0.96697 * 114.00200 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47412 * 65.00510 * 4 2 1 32 32 H 1.08999 * 109.46832 * 185.00063 * 4 2 1 33 33 H 0.97000 * 120.00029 * 0.02562 * 5 4 2 34 34 H 0.97000 * 119.99660 * 359.97438 * 8 6 5 35 35 H 1.09005 * 109.46268 * 34.99299 * 9 8 6 36 36 H 1.08996 * 109.49767 * 298.56509 * 10 9 8 37 37 H 1.08998 * 109.49116 * 58.66266 * 10 9 8 38 38 H 1.08996 * 109.59813 * 294.87249 * 11 10 9 39 39 H 1.08996 * 109.70276 * 174.50551 * 11 10 9 40 40 H 0.97004 * 120.00502 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.58715 * 293.82414 * 21 12 11 42 42 H 1.08997 * 109.70420 * 173.46371 * 21 12 11 43 43 H 1.08997 * 109.49887 * 301.33793 * 22 9 8 44 44 H 1.09005 * 109.49592 * 61.39924 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.4557 -0.1036 2.4424 6 6 1.7645 -0.5768 3.6660 7 8 2.5276 -1.5165 3.7797 8 7 1.2267 -0.0089 4.7636 9 6 1.5627 -0.5228 6.0937 10 6 0.6454 -1.7003 6.4320 11 6 1.0228 -2.2572 7.8083 12 7 0.9853 -1.1626 8.7877 13 6 0.2424 -1.2756 9.9324 14 1 -0.6318 -1.9098 9.9484 15 6 0.6127 -0.5753 11.0722 16 7 -0.2714 -0.3453 12.0196 17 14 2.3660 0.0405 11.2615 18 1 2.4592 1.4327 10.7532 19 1 2.7491 0.0107 12.6960 20 1 3.2837 -0.8321 10.4859 21 6 1.7605 0.0555 8.5157 22 6 1.3752 0.5864 7.1313 23 6 2.0400 -0.7213 -1.2492 24 9 3.4390 -0.7218 -1.2488 25 9 1.5738 -0.0618 -2.3915 26 9 1.5737 -2.0403 -1.2492 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 2.9703 1.4236 0.0004 31 1 1.7516 -1.7716 1.2057 32 1 3.1262 -0.6443 1.2953 33 1 0.8467 0.6458 2.3517 34 1 0.6176 0.7406 4.6729 35 1 2.6004 -0.8566 6.1025 36 1 -0.3904 -1.3616 6.4479 37 1 0.7623 -2.4802 5.6796 38 1 2.0273 -2.6784 7.7694 39 1 0.3128 -3.0317 8.0986 40 1 -0.0126 0.1437 12.8164 41 1 2.8252 -0.1771 8.5344 42 1 1.5378 0.8092 9.2710 43 1 2.0113 1.4341 6.8767 44 1 0.3324 0.9038 7.1401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614265310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:03 Heat of formation + Delta-G solvation = -233.609643 kcal Electronic energy + Delta-G solvation = -30549.411677 eV Core-core repulsion = 25700.515077 eV Total energy + Delta-G solvation = -4848.896600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.27524 -48.78616 -48.73246 -41.35433 -39.74278 -38.96468 -36.10261 -35.53945 -34.06526 -32.89561 -31.95799 -31.49358 -28.22350 -27.27610 -26.27622 -24.49794 -23.54016 -22.29975 -21.93085 -21.19106 -19.97626 -19.83644 -19.53454 -19.24031 -18.72024 -17.64745 -17.08230 -16.89767 -16.68558 -16.01933 -15.90745 -15.65720 -15.58327 -15.38359 -15.29508 -15.28257 -15.16639 -14.90277 -14.83613 -14.78509 -14.57457 -14.45377 -14.25310 -13.78749 -13.77673 -13.51161 -13.43478 -13.09452 -12.57645 -12.52659 -12.38359 -12.26075 -12.00630 -11.76758 -11.63246 -11.54529 -11.41210 -11.27411 -10.70121 -10.39824 -9.80930 -8.95321 -8.14917 -5.47145 1.25010 1.30605 1.44401 1.52955 1.74872 2.13812 2.42805 2.52667 2.55265 2.72914 3.06437 3.07406 3.25725 3.37356 3.41459 3.60126 3.80513 4.01505 4.25835 4.34467 4.35208 4.42053 4.50837 4.58518 4.64838 4.65746 4.72242 4.89205 4.94455 5.04110 5.06079 5.09849 5.19307 5.30414 5.43253 5.56791 5.88209 5.96590 6.14270 6.25154 6.92226 7.07261 7.56933 7.62848 8.03238 9.04889 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.032736 B = 0.002121 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.111311 B =13197.552845 C =13292.772974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.102 3.898 3 O -0.528 6.528 4 C 0.114 3.886 5 N -0.722 5.722 6 C 0.704 3.296 7 O -0.632 6.632 8 N -0.724 5.724 9 C 0.179 3.821 10 C -0.128 4.128 11 C 0.147 3.853 12 N -0.619 5.619 13 C -0.248 4.248 14 H 0.053 0.947 15 C -0.034 4.034 16 N -0.956 5.956 17 Si 0.944 3.056 18 H -0.268 1.268 19 H -0.313 1.313 20 H -0.265 1.265 21 C 0.120 3.880 22 C -0.126 4.126 23 C 0.429 3.571 24 F -0.184 7.184 25 F -0.176 7.176 26 F -0.179 7.179 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.402 0.598 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.414 0.586 34 H 0.411 0.589 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.028 0.972 39 H 0.057 0.943 40 H 0.262 0.738 41 H 0.031 0.969 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 5.115 -30.899 31.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.058 3.942 3 O -0.336 6.336 4 C -0.012 4.012 5 N -0.381 5.381 6 C 0.403 3.597 7 O -0.512 6.512 8 N -0.379 5.379 9 C 0.074 3.926 10 C -0.168 4.168 11 C 0.021 3.979 12 N -0.344 5.344 13 C -0.377 4.377 14 H 0.071 0.929 15 C -0.229 4.229 16 N -0.602 5.602 17 Si 0.773 3.227 18 H -0.194 1.194 19 H -0.242 1.242 20 H -0.190 1.190 21 C -0.005 4.005 22 C -0.166 4.166 23 C 0.373 3.627 24 F -0.165 7.165 25 F -0.157 7.157 26 F -0.161 7.161 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.254 0.746 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.253 0.747 34 H 0.247 0.753 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.635 4.442 -30.702 31.234 hybrid contribution 0.871 0.374 0.388 1.024 sum 4.506 4.816 -30.315 31.024 Atomic orbital electron populations 1.21987 0.87444 1.05391 1.06097 1.22440 0.99354 0.83976 0.88412 1.86683 1.29677 1.21351 1.95935 1.21701 0.99129 0.97714 0.82653 1.44609 1.52218 1.38437 1.02802 1.16019 0.80505 0.82027 0.81110 1.90928 1.41857 1.32082 1.86372 1.45051 1.50979 1.37716 1.04106 1.20520 0.98554 0.93587 0.79972 1.22212 0.99762 0.98067 0.96742 1.21012 0.98754 0.89912 0.88218 1.44520 1.55616 1.13624 1.20628 1.18865 1.04031 1.26375 0.88450 0.92929 1.25883 1.00928 1.00488 0.95578 1.69958 1.34898 1.44503 1.10876 0.85954 0.82681 0.78852 0.75206 1.19403 1.24197 1.18984 1.21378 0.94227 0.88661 0.96226 1.22153 1.03091 0.97591 0.93742 1.21477 0.75699 0.78099 0.87387 1.93202 1.30153 1.96321 1.96838 1.93209 1.88307 1.80619 1.53576 1.93209 1.88359 1.37739 1.96771 0.88763 0.88241 0.89512 0.74603 0.90008 0.90285 0.74709 0.75253 0.91413 0.91821 0.91741 0.95388 0.92400 0.92934 0.95076 0.92356 0.89189 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.37 71.98 0.60 -0.51 16 2 C 0.10 0.98 0.58 -10.79 -0.01 0.98 16 3 O -0.53 -4.47 12.87 -148.98 -1.92 -6.39 16 4 C 0.11 1.54 4.57 86.38 0.39 1.93 16 5 N -0.72 -10.38 5.19 -478.54 -2.49 -12.87 16 6 C 0.70 16.45 8.53 179.05 1.53 17.98 16 7 O -0.63 -20.84 16.01 -3.99 -0.06 -20.91 16 8 N -0.72 -15.41 5.08 -457.67 -2.33 -17.74 16 9 C 0.18 5.14 2.42 45.02 0.11 5.25 16 10 C -0.13 -4.08 5.65 30.68 0.17 -3.90 16 11 C 0.15 5.75 6.52 86.36 0.56 6.31 16 12 N -0.62 -28.61 2.77 -699.10 -1.94 -30.54 16 13 C -0.25 -13.88 10.03 84.03 0.84 -13.04 16 14 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 15 C -0.03 -1.96 5.23 84.86 0.44 -1.52 16 16 N -0.96 -59.45 13.97 21.65 0.30 -59.15 16 17 Si 0.94 45.87 24.35 68.60 1.67 47.54 16 18 H -0.27 -11.98 6.62 99.48 0.66 -11.32 16 19 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 20 H -0.27 -12.53 6.63 99.48 0.66 -11.87 16 21 C 0.12 4.85 4.20 86.36 0.36 5.21 16 22 C -0.13 -3.74 5.55 30.67 0.17 -3.57 16 23 C 0.43 5.34 2.38 71.98 0.17 5.51 16 24 F -0.18 -2.48 16.51 44.97 0.74 -1.74 16 25 F -0.18 -2.46 16.74 44.97 0.75 -1.71 16 26 F -0.18 -2.59 16.19 44.97 0.73 -1.86 16 27 H 0.09 0.64 7.80 -2.39 -0.02 0.62 16 28 H 0.10 0.51 6.57 -2.39 -0.02 0.49 16 29 H 0.09 0.61 7.80 -2.39 -0.02 0.59 16 30 H 0.40 1.48 8.69 -74.06 -0.64 0.83 16 31 H 0.08 1.29 7.66 -2.38 -0.02 1.27 16 32 H 0.08 1.17 7.94 -2.39 -0.02 1.15 16 33 H 0.41 3.68 7.00 -92.71 -0.65 3.04 16 34 H 0.41 6.06 8.62 -92.71 -0.80 5.26 16 35 H 0.07 2.23 7.58 -2.38 -0.02 2.21 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 40 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.03 1.24 7.08 -2.39 -0.02 1.23 16 42 H 0.06 2.57 4.50 -2.39 -0.01 2.56 16 43 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -73.67 360.32 -0.29 -73.96 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -1.11 Total: 10.76 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 5.35 Total: 20.64 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -6.44 Total: -120.30 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -1.98 Total: -27.30 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 2.22 Total: -5.31 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.67 Total: 47.54 kcal Total: -73.67 -0.29 -73.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614265310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.648 kcal (2) G-P(sol) polarization free energy of solvation -73.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds