Wall clock time and date at job start Tue Mar 31 2020 22:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.46819 * 2 1 4 4 C 1.52997 * 109.47167 * 240.00314 * 2 1 3 5 5 N 1.46496 * 109.47595 * 59.99783 * 4 2 1 6 6 C 1.34777 * 120.00088 * 180.02562 * 5 4 2 7 7 O 1.21579 * 120.00208 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99666 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99821 * 180.02562 * 8 6 5 10 10 C 1.53040 * 109.45822 * 275.02378 * 9 8 6 11 11 C 1.53195 * 109.31566 * 178.59978 * 10 9 8 12 12 N 1.46929 * 108.76247 * 54.65482 * 11 10 9 13 13 C 1.36936 * 120.62820 * 126.40773 * 12 11 10 14 14 H 1.08000 * 120.00243 * 332.60964 * 13 12 11 15 15 C 1.38814 * 119.99934 * 152.60947 * 13 12 11 16 16 N 1.31615 * 119.99899 * 159.34093 * 15 13 12 17 17 Si 1.86795 * 119.99824 * 339.34603 * 15 13 12 18 18 H 1.48499 * 109.47374 * 92.94336 * 17 15 13 19 19 H 1.48507 * 109.46893 * 212.93941 * 17 15 13 20 20 H 1.48499 * 109.47291 * 332.93996 * 17 15 13 21 21 C 1.46929 * 118.73999 * 306.38584 * 12 11 10 22 22 C 1.53041 * 109.46224 * 154.97521 * 9 8 6 23 23 C 1.52998 * 109.47181 * 119.99580 * 2 1 3 24 24 F 1.39903 * 109.46900 * 179.97438 * 23 2 1 25 25 F 1.39898 * 109.46960 * 60.00476 * 23 2 1 26 26 F 1.39894 * 109.47411 * 300.00274 * 23 2 1 27 27 H 1.09003 * 109.47231 * 299.99972 * 1 2 3 28 28 H 1.08997 * 109.47646 * 59.99931 * 1 2 3 29 29 H 1.09003 * 109.47194 * 180.02562 * 1 2 3 30 30 H 0.96702 * 113.99839 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47155 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.47009 * 299.99530 * 4 2 1 33 33 H 0.97004 * 119.99779 * 359.97438 * 5 4 2 34 34 H 0.97004 * 120.00201 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.46529 * 34.99478 * 9 8 6 36 36 H 1.09003 * 109.49855 * 298.56777 * 10 9 8 37 37 H 1.09000 * 109.49745 * 58.66661 * 10 9 8 38 38 H 1.08999 * 109.59572 * 294.87528 * 11 10 9 39 39 H 1.08997 * 109.70421 * 174.50875 * 11 10 9 40 40 H 0.97001 * 120.00211 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.58838 * 293.82057 * 21 12 11 42 42 H 1.08996 * 109.70384 * 173.46288 * 21 12 11 43 43 H 1.09008 * 109.49369 * 301.33193 * 22 9 8 44 44 H 1.08997 * 109.50052 * 61.42581 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5517 -0.0306 -2.4454 6 6 1.8769 -0.4914 -3.6695 7 8 2.5759 -1.4799 -3.7811 8 7 1.4272 0.1437 -4.7700 9 6 1.7802 -0.3575 -6.1005 10 6 3.1432 0.2040 -6.5117 11 6 3.5250 -0.3496 -7.8881 12 7 2.4405 -0.0536 -8.8341 13 6 2.6993 0.5972 -10.0108 14 1 3.5404 1.2710 -10.0816 15 6 1.8808 0.3907 -11.1127 16 7 1.8541 1.2747 -12.0875 17 14 0.8170 -1.1415 -11.2119 18 1 -0.5288 -0.8466 -10.6577 19 1 0.6868 -1.5627 -12.6301 20 1 1.4472 -2.2334 -10.4271 21 6 1.0730 -0.4694 -8.4937 22 6 0.7189 0.0854 -7.1103 23 6 2.0400 -0.7211 1.2493 24 9 3.4390 -0.7216 1.2489 25 9 1.5737 -2.0401 1.2493 26 9 1.5736 -0.0617 2.3915 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 2.9702 1.4237 -0.0004 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7488 -1.2493 33 1 0.9936 0.7578 -2.3564 34 1 0.8691 0.9321 -4.6810 35 1 1.8279 -1.4462 -6.0778 36 1 3.0894 1.2917 -6.5590 37 1 3.8945 -0.0921 -5.7796 38 1 3.6675 -1.4282 -7.8216 39 1 4.4470 0.1203 -8.2304 40 1 1.2824 1.1303 -12.8577 41 1 1.0155 -1.5577 -8.4766 42 1 0.3750 -0.0782 -9.2338 43 1 -0.2557 -0.2951 -6.8043 44 1 0.6881 1.1742 -7.1519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614265311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:07 Heat of formation + Delta-G solvation = -206.993378 kcal Electronic energy + Delta-G solvation = -30545.198107 eV Core-core repulsion = 25697.455674 eV Total energy + Delta-G solvation = -4847.742432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.70314 -48.21017 -48.15044 -40.37195 -38.91610 -37.69204 -34.87607 -34.49977 -32.56249 -31.90395 -30.44509 -29.99770 -27.62436 -26.37855 -24.71943 -22.95245 -22.07279 -21.63403 -20.95263 -19.74924 -19.31125 -19.10336 -18.94066 -18.42695 -17.01899 -16.41379 -16.16944 -16.09361 -15.28207 -15.15476 -15.01558 -14.70639 -14.59001 -14.54946 -14.40703 -14.31153 -14.24411 -14.15198 -13.87551 -13.80258 -13.43955 -13.15202 -13.03753 -12.88738 -12.63517 -12.37852 -11.99422 -11.90605 -11.79053 -11.10250 -11.00801 -10.83178 -10.56336 -10.31561 -10.28880 -10.06932 -9.78044 -9.50397 -9.42479 -8.76028 -8.64497 -7.00254 -5.96064 -3.31850 1.87831 2.51040 3.00729 3.12761 3.16331 3.28466 3.30072 3.48378 3.51719 3.56754 3.92815 4.09921 4.17638 4.51838 4.88426 4.94006 4.94968 5.01603 5.08954 5.16456 5.33001 5.38938 5.39518 5.66122 5.81602 6.03183 6.07446 6.09164 6.14679 6.29256 6.40175 6.56032 6.56829 6.63422 6.64556 6.70241 6.81751 6.97570 7.93132 7.95065 8.31933 8.54384 8.92820 9.70788 10.08410 11.19927 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.002120 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.195904 B =13202.748690 C =13297.014816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.087 3.913 3 O -0.525 6.525 4 C 0.114 3.886 5 N -0.743 5.743 6 C 0.704 3.296 7 O -0.588 6.588 8 N -0.736 5.736 9 C 0.168 3.832 10 C -0.141 4.141 11 C 0.151 3.849 12 N -0.606 5.606 13 C -0.259 4.259 14 H 0.086 0.914 15 C 0.022 3.978 16 N -0.908 5.908 17 Si 0.881 3.119 18 H -0.289 1.289 19 H -0.303 1.303 20 H -0.270 1.270 21 C 0.129 3.871 22 C -0.140 4.140 23 C 0.430 3.570 24 F -0.180 7.180 25 F -0.174 7.174 26 F -0.172 7.172 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.392 0.608 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.400 0.600 34 H 0.393 0.607 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.066 0.934 40 H 0.262 0.738 41 H 0.028 0.972 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 -1.251 28.805 29.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.043 3.957 3 O -0.332 6.332 4 C -0.012 4.012 5 N -0.401 5.401 6 C 0.404 3.596 7 O -0.465 6.465 8 N -0.389 5.389 9 C 0.064 3.936 10 C -0.182 4.182 11 C 0.024 3.976 12 N -0.330 5.330 13 C -0.387 4.387 14 H 0.104 0.896 15 C -0.176 4.176 16 N -0.551 5.551 17 Si 0.712 3.288 18 H -0.216 1.216 19 H -0.231 1.231 20 H -0.195 1.195 21 C 0.003 3.997 22 C -0.180 4.180 23 C 0.375 3.625 24 F -0.161 7.161 25 F -0.155 7.155 26 F -0.153 7.153 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.242 0.758 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.236 0.764 34 H 0.227 0.773 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.554 -2.014 28.522 28.814 hybrid contribution -0.429 -0.287 0.274 0.584 sum -3.983 -2.301 28.797 29.162 Atomic orbital electron populations 1.21896 0.88411 1.04788 1.05403 1.22616 0.98787 0.84251 0.90030 1.86688 1.28542 1.21844 1.96111 1.21662 1.00422 0.96775 0.82319 1.44814 1.57906 1.33675 1.03716 1.15910 0.80460 0.83034 0.80164 1.90945 1.42346 1.27463 1.85749 1.45449 1.55774 1.32497 1.05229 1.20888 0.95014 0.99148 0.78508 1.22398 0.96088 1.00976 0.98710 1.20901 0.91837 0.97085 0.87764 1.44411 1.00901 1.67996 1.19696 1.18932 1.14661 1.18726 0.86404 0.89634 1.25289 0.98795 0.97913 0.95652 1.69835 1.40856 1.33964 1.10494 0.86971 0.79956 0.85992 0.75890 1.21644 1.23130 1.19452 1.21303 0.88072 0.96718 0.93601 1.22356 0.96867 1.02057 0.96715 1.21291 0.75899 0.78261 0.87097 1.93210 1.29789 1.96317 1.96803 1.93218 1.88320 1.37261 1.96750 1.93215 1.88266 1.80574 1.53253 0.89929 0.89281 0.89191 0.75817 0.89949 0.89249 0.76437 0.77332 0.89872 0.91912 0.92241 0.95674 0.91597 0.92767 0.95452 0.90500 0.92255 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 8.43 37.16 0.31 -0.40 16 2 C 0.09 0.51 0.56 -90.62 -0.05 0.46 16 3 O -0.52 -2.96 12.67 -35.23 -0.45 -3.41 16 4 C 0.11 0.89 4.54 -4.05 -0.02 0.87 16 5 N -0.74 -6.38 5.15 -65.23 -0.34 -6.71 16 6 C 0.70 9.14 8.53 -86.92 -0.74 8.39 16 7 O -0.59 -10.17 16.01 5.30 0.08 -10.09 16 8 N -0.74 -9.02 5.08 -58.64 -0.30 -9.31 16 9 C 0.17 2.64 2.42 -67.89 -0.16 2.47 16 10 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 11 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 12 N -0.61 -14.18 2.77 -172.32 -0.48 -14.65 16 13 C -0.26 -7.14 10.04 -15.06 -0.15 -7.30 16 14 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 15 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 16 N -0.91 -27.57 13.97 55.49 0.78 -26.80 16 17 Si 0.88 22.11 24.34 -169.99 -4.14 17.97 16 18 H -0.29 -6.90 6.62 56.52 0.37 -6.53 16 19 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 20 H -0.27 -6.69 6.63 56.52 0.37 -6.31 16 21 C 0.13 2.73 4.20 -3.71 -0.02 2.71 16 22 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 23 C 0.43 3.02 2.38 37.16 0.09 3.11 16 24 F -0.18 -1.35 16.42 2.25 0.04 -1.32 16 25 F -0.17 -1.35 16.28 2.25 0.04 -1.31 16 26 F -0.17 -1.34 16.74 2.25 0.04 -1.30 16 27 H 0.08 0.39 7.80 -51.93 -0.41 -0.02 16 28 H 0.09 0.37 6.86 -51.93 -0.36 0.01 16 29 H 0.09 0.39 7.80 -51.93 -0.41 -0.01 16 30 H 0.39 1.29 8.69 45.56 0.40 1.69 16 31 H 0.08 0.69 7.80 -51.93 -0.41 0.29 16 32 H 0.09 0.76 7.80 -51.93 -0.41 0.35 16 33 H 0.40 2.53 7.21 -40.82 -0.29 2.23 16 34 H 0.39 3.71 8.62 -40.82 -0.35 3.35 16 35 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 42 H 0.08 1.77 4.50 -51.93 -0.23 1.53 16 43 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -33.67 360.56 -5.80 -39.47 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.36 Total: 3.16 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -1.15 Total: 8.87 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.34 Total: -57.48 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.36 Total: -13.50 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.11 Total: -3.93 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.67 -5.80 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614265311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.518 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds