Wall clock time and date at job start Tue Mar 31 2020 22:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.46819 * 2 1 4 4 C 1.52997 * 109.47167 * 240.00314 * 2 1 3 5 5 N 1.46496 * 109.47595 * 59.99783 * 4 2 1 6 6 C 1.34777 * 120.00088 * 180.02562 * 5 4 2 7 7 O 1.21579 * 120.00208 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99666 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99821 * 180.02562 * 8 6 5 10 10 C 1.53040 * 109.45822 * 275.02378 * 9 8 6 11 11 C 1.53195 * 109.31566 * 178.59978 * 10 9 8 12 12 N 1.46929 * 108.76247 * 54.65482 * 11 10 9 13 13 C 1.36936 * 120.62820 * 126.40773 * 12 11 10 14 14 H 1.08000 * 120.00243 * 332.60964 * 13 12 11 15 15 C 1.38814 * 119.99934 * 152.60947 * 13 12 11 16 16 N 1.31615 * 119.99899 * 159.34093 * 15 13 12 17 17 Si 1.86795 * 119.99824 * 339.34603 * 15 13 12 18 18 H 1.48499 * 109.47374 * 92.94336 * 17 15 13 19 19 H 1.48507 * 109.46893 * 212.93941 * 17 15 13 20 20 H 1.48499 * 109.47291 * 332.93996 * 17 15 13 21 21 C 1.46929 * 118.73999 * 306.38584 * 12 11 10 22 22 C 1.53041 * 109.46224 * 154.97521 * 9 8 6 23 23 C 1.52998 * 109.47181 * 119.99580 * 2 1 3 24 24 F 1.39903 * 109.46900 * 179.97438 * 23 2 1 25 25 F 1.39898 * 109.46960 * 60.00476 * 23 2 1 26 26 F 1.39894 * 109.47411 * 300.00274 * 23 2 1 27 27 H 1.09003 * 109.47231 * 299.99972 * 1 2 3 28 28 H 1.08997 * 109.47646 * 59.99931 * 1 2 3 29 29 H 1.09003 * 109.47194 * 180.02562 * 1 2 3 30 30 H 0.96702 * 113.99839 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47155 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.47009 * 299.99530 * 4 2 1 33 33 H 0.97004 * 119.99779 * 359.97438 * 5 4 2 34 34 H 0.97004 * 120.00201 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.46529 * 34.99478 * 9 8 6 36 36 H 1.09003 * 109.49855 * 298.56777 * 10 9 8 37 37 H 1.09000 * 109.49745 * 58.66661 * 10 9 8 38 38 H 1.08999 * 109.59572 * 294.87528 * 11 10 9 39 39 H 1.08997 * 109.70421 * 174.50875 * 11 10 9 40 40 H 0.97001 * 120.00211 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.58838 * 293.82057 * 21 12 11 42 42 H 1.08996 * 109.70384 * 173.46288 * 21 12 11 43 43 H 1.09008 * 109.49369 * 301.33193 * 22 9 8 44 44 H 1.08997 * 109.50052 * 61.42581 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5517 -0.0306 -2.4454 6 6 1.8769 -0.4914 -3.6695 7 8 2.5759 -1.4799 -3.7811 8 7 1.4272 0.1437 -4.7700 9 6 1.7802 -0.3575 -6.1005 10 6 3.1432 0.2040 -6.5117 11 6 3.5250 -0.3496 -7.8881 12 7 2.4405 -0.0536 -8.8341 13 6 2.6993 0.5972 -10.0108 14 1 3.5404 1.2710 -10.0816 15 6 1.8808 0.3907 -11.1127 16 7 1.8541 1.2747 -12.0875 17 14 0.8170 -1.1415 -11.2119 18 1 -0.5288 -0.8466 -10.6577 19 1 0.6868 -1.5627 -12.6301 20 1 1.4472 -2.2334 -10.4271 21 6 1.0730 -0.4694 -8.4937 22 6 0.7189 0.0854 -7.1103 23 6 2.0400 -0.7211 1.2493 24 9 3.4390 -0.7216 1.2489 25 9 1.5737 -2.0401 1.2493 26 9 1.5736 -0.0617 2.3915 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 2.9702 1.4237 -0.0004 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7488 -1.2493 33 1 0.9936 0.7578 -2.3564 34 1 0.8691 0.9321 -4.6810 35 1 1.8279 -1.4462 -6.0778 36 1 3.0894 1.2917 -6.5590 37 1 3.8945 -0.0921 -5.7796 38 1 3.6675 -1.4282 -7.8216 39 1 4.4470 0.1203 -8.2304 40 1 1.2824 1.1303 -12.8577 41 1 1.0155 -1.5577 -8.4766 42 1 0.3750 -0.0782 -9.2338 43 1 -0.2557 -0.2951 -6.8043 44 1 0.6881 1.1742 -7.1519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614265311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:07 Heat of formation + Delta-G solvation = -234.326281 kcal Electronic energy + Delta-G solvation = -30546.383350 eV Core-core repulsion = 25697.455674 eV Total energy + Delta-G solvation = -4848.927676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.27427 -48.78610 -48.73120 -41.34964 -39.73887 -38.96283 -36.09771 -35.50782 -34.06543 -32.92795 -31.95844 -31.50263 -28.18506 -27.27572 -26.27449 -24.49768 -23.53646 -22.29326 -21.94703 -21.19092 -19.97227 -19.82548 -19.53376 -19.23495 -18.71894 -17.64389 -17.08875 -16.85495 -16.73627 -15.99260 -15.90304 -15.66087 -15.58086 -15.37877 -15.29330 -15.27896 -15.16509 -14.90406 -14.83742 -14.79051 -14.55502 -14.46662 -14.25529 -13.80757 -13.75715 -13.50291 -13.43824 -13.09300 -12.57506 -12.52733 -12.38371 -12.26125 -12.00735 -11.76729 -11.62808 -11.54546 -11.41284 -11.27611 -10.70106 -10.39582 -9.80692 -8.95372 -8.14944 -5.47186 1.25016 1.30701 1.44523 1.53138 1.74776 2.14222 2.42871 2.52850 2.55528 2.73156 3.06716 3.07383 3.26557 3.37792 3.41325 3.60478 3.80574 4.01455 4.25932 4.34557 4.36207 4.42268 4.50898 4.59833 4.65345 4.65569 4.72285 4.89244 4.94365 5.04895 5.05837 5.09676 5.19329 5.30316 5.43120 5.56885 5.88150 5.97101 6.14223 6.24190 6.92190 7.07768 7.57207 7.62794 8.03185 9.04888 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.002120 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.195904 B =13202.748690 C =13297.014816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.102 3.898 3 O -0.528 6.528 4 C 0.113 3.887 5 N -0.721 5.721 6 C 0.704 3.296 7 O -0.632 6.632 8 N -0.724 5.724 9 C 0.179 3.821 10 C -0.128 4.128 11 C 0.147 3.853 12 N -0.619 5.619 13 C -0.248 4.248 14 H 0.052 0.948 15 C -0.034 4.034 16 N -0.956 5.956 17 Si 0.945 3.055 18 H -0.267 1.267 19 H -0.313 1.313 20 H -0.265 1.265 21 C 0.120 3.880 22 C -0.126 4.126 23 C 0.428 3.572 24 F -0.184 7.184 25 F -0.179 7.179 26 F -0.176 7.176 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.402 0.598 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.411 0.589 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.028 0.972 39 H 0.057 0.943 40 H 0.262 0.738 41 H 0.032 0.968 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.145 -1.529 31.159 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.058 3.942 3 O -0.337 6.337 4 C -0.012 4.012 5 N -0.380 5.380 6 C 0.404 3.596 7 O -0.512 6.512 8 N -0.379 5.379 9 C 0.074 3.926 10 C -0.168 4.168 11 C 0.021 3.979 12 N -0.344 5.344 13 C -0.378 4.378 14 H 0.070 0.930 15 C -0.229 4.229 16 N -0.602 5.602 17 Si 0.773 3.227 18 H -0.194 1.194 19 H -0.242 1.242 20 H -0.190 1.190 21 C -0.005 4.005 22 C -0.166 4.166 23 C 0.373 3.627 24 F -0.166 7.166 25 F -0.160 7.160 26 F -0.157 7.157 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.254 0.746 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.253 0.747 34 H 0.247 0.753 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.168 -2.259 30.966 31.475 hybrid contribution 0.171 -0.163 -0.360 0.431 sum -4.998 -2.422 30.606 31.106 Atomic orbital electron populations 1.21986 0.87340 1.05403 1.06098 1.22461 0.99397 0.83963 0.88387 1.86682 1.29670 1.21379 1.95923 1.21695 1.00168 0.96772 0.82598 1.44561 1.57149 1.33706 1.02571 1.16012 0.80028 0.82497 0.81105 1.90927 1.44343 1.29493 1.86484 1.45053 1.55918 1.32997 1.03883 1.20519 0.93944 0.98216 0.79953 1.22211 0.97236 1.00721 0.96621 1.21011 0.90816 0.97339 0.88720 1.44519 1.02921 1.68003 1.18953 1.18862 1.13108 1.17613 0.88176 0.92977 1.25891 1.01070 1.00424 0.95509 1.69960 1.42919 1.35863 1.11503 0.85947 0.79411 0.82099 0.75196 1.19362 1.24196 1.18969 1.21382 0.86245 0.96980 0.95895 1.22154 0.98454 1.02066 0.93893 1.21484 0.75680 0.78112 0.87399 1.93203 1.30211 1.96322 1.96832 1.93209 1.88351 1.37707 1.96781 1.93206 1.88298 1.80625 1.53583 0.89593 0.88239 0.88692 0.74633 0.90549 0.89786 0.74692 0.75252 0.91354 0.91905 0.91800 0.95362 0.92442 0.92929 0.95037 0.92348 0.89091 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.43 71.98 0.61 -0.45 16 2 C 0.10 0.98 0.56 -10.80 -0.01 0.97 16 3 O -0.53 -4.60 12.67 -148.98 -1.89 -6.48 16 4 C 0.11 1.53 4.54 86.38 0.39 1.92 16 5 N -0.72 -10.34 5.15 -478.55 -2.47 -12.81 16 6 C 0.70 16.43 8.53 179.05 1.53 17.96 16 7 O -0.63 -20.83 16.01 -3.97 -0.06 -20.89 16 8 N -0.72 -15.40 5.08 -457.69 -2.33 -17.73 16 9 C 0.18 5.14 2.42 45.02 0.11 5.25 16 10 C -0.13 -4.10 5.65 30.67 0.17 -3.92 16 11 C 0.15 5.76 6.52 86.36 0.56 6.33 16 12 N -0.62 -28.64 2.77 -699.09 -1.94 -30.58 16 13 C -0.25 -13.92 10.04 84.03 0.84 -13.08 16 14 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 15 C -0.03 -1.97 5.23 84.86 0.44 -1.53 16 16 N -0.96 -59.49 13.97 21.65 0.30 -59.19 16 17 Si 0.94 45.84 24.34 68.60 1.67 47.51 16 18 H -0.27 -11.94 6.62 99.48 0.66 -11.28 16 19 H -0.31 -15.57 7.11 99.48 0.71 -14.87 16 20 H -0.27 -12.50 6.63 99.48 0.66 -11.84 16 21 C 0.12 4.84 4.20 86.36 0.36 5.20 16 22 C -0.13 -3.73 5.55 30.67 0.17 -3.56 16 23 C 0.43 5.34 2.38 71.98 0.17 5.51 16 24 F -0.18 -2.54 16.42 44.97 0.74 -1.80 16 25 F -0.18 -2.53 16.28 44.97 0.73 -1.80 16 26 F -0.18 -2.46 16.74 44.97 0.75 -1.71 16 27 H 0.09 0.58 7.80 -2.39 -0.02 0.56 16 28 H 0.10 0.49 6.86 -2.39 -0.02 0.47 16 29 H 0.09 0.59 7.80 -2.39 -0.02 0.57 16 30 H 0.40 1.72 8.69 -74.06 -0.64 1.08 16 31 H 0.08 1.16 7.80 -2.38 -0.02 1.15 16 32 H 0.08 1.29 7.80 -2.39 -0.02 1.27 16 33 H 0.41 3.71 7.21 -92.71 -0.67 3.04 16 34 H 0.41 6.07 8.62 -92.71 -0.80 5.27 16 35 H 0.07 2.24 7.58 -2.39 -0.02 2.22 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 2.30 7.93 -2.39 -0.02 2.29 16 40 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.03 1.25 7.07 -2.39 -0.02 1.24 16 42 H 0.06 2.57 4.50 -2.39 -0.01 2.56 16 43 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -73.63 360.56 -0.26 -73.89 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -1.13 Total: 10.97 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 5.36 Total: 20.60 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -6.43 Total: -120.29 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -1.95 Total: -27.38 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 2.22 Total: -5.31 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Total: -73.63 -0.26 -73.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614265311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.434 kcal (2) G-P(sol) polarization free energy of solvation -73.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds