Wall clock time and date at job start Tue Mar 31 2020 22:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34720 * 116.99897 * 2 1 4 4 O 1.21490 * 119.99968 * 0.02562 * 3 2 1 5 5 C 1.47631 * 120.00126 * 179.97438 * 3 2 1 6 6 C 1.40925 * 126.26971 * 179.97438 * 5 3 2 7 7 C 1.37087 * 105.46389 * 180.02562 * 6 5 3 8 8 C 1.47054 * 126.64986 * 180.26748 * 7 6 5 9 9 O 1.21543 * 120.00053 * 359.68125 * 8 7 6 10 10 O 1.34812 * 119.99700 * 179.68652 * 8 7 6 11 11 C 1.45206 * 116.99746 * 179.97438 * 10 8 7 12 12 N 1.36813 * 106.69738 * 0.02562 * 7 6 5 13 13 C 1.46500 * 125.06287 * 179.97438 * 12 7 6 14 14 N 1.46895 * 109.47301 * 71.67495 * 13 12 7 15 15 C 1.46907 * 111.00076 * 200.20093 * 14 13 12 16 16 C 1.50700 * 109.47126 * 166.71601 * 15 14 13 17 17 H 1.08002 * 120.00367 * 4.44653 * 16 15 14 18 18 C 1.37875 * 119.99996 * 184.45151 * 16 15 14 19 19 N 1.31519 * 120.00061 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00186 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47247 * 59.99804 * 20 18 16 22 22 H 1.48502 * 109.47355 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46939 * 299.99689 * 20 18 16 24 24 C 1.46901 * 111.00272 * 76.25097 * 14 13 12 25 25 C 1.53003 * 109.46818 * 285.24162 * 24 14 13 26 26 C 1.52998 * 109.47071 * 45.23809 * 24 14 13 27 27 N 1.28449 * 109.87436 * 359.97438 * 12 7 6 28 28 H 1.08998 * 109.47058 * 299.99389 * 1 2 3 29 29 H 1.08991 * 109.47327 * 60.00191 * 1 2 3 30 30 H 1.09005 * 109.46771 * 180.02562 * 1 2 3 31 31 H 1.07997 * 127.27022 * 0.06258 * 6 5 3 32 32 H 1.08996 * 109.47033 * 179.97438 * 11 10 8 33 33 H 1.09001 * 109.46843 * 299.99785 * 11 10 8 34 34 H 1.09004 * 109.46804 * 59.99713 * 11 10 8 35 35 H 1.09000 * 109.47027 * 191.67468 * 13 12 7 36 36 H 1.08998 * 109.46984 * 311.67303 * 13 12 7 37 37 H 1.09000 * 109.47277 * 286.71448 * 15 14 13 38 38 H 1.09002 * 109.46775 * 46.71821 * 15 14 13 39 39 H 0.96997 * 119.99937 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.47382 * 165.24622 * 24 14 13 41 41 H 1.09007 * 109.46746 * 71.77125 * 25 24 14 42 42 H 1.08999 * 109.47018 * 191.77065 * 25 24 14 43 43 H 1.08999 * 109.47088 * 311.77383 * 25 24 14 44 44 H 1.09004 * 109.47092 * 51.57794 * 26 24 14 45 45 H 1.09005 * 109.47270 * 171.57041 * 26 24 14 46 46 H 1.08997 * 109.47439 * 291.57547 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5379 1.2777 0.0006 6 6 4.3109 2.4560 0.0001 7 6 5.6161 2.0369 0.0004 8 6 6.8126 2.8918 0.0056 9 8 6.6952 4.1015 0.0044 10 8 8.0398 2.3336 0.0115 11 6 9.1754 3.2385 0.0159 12 7 5.5897 0.6690 0.0003 13 6 6.7724 -0.1956 0.0000 14 7 7.4250 -0.1331 1.3145 15 6 8.8241 -0.5729 1.2291 16 6 9.5479 -0.1943 2.4956 17 1 9.0054 0.2565 3.3134 18 6 10.9026 -0.4234 2.6101 19 7 11.5632 -0.9728 1.6144 20 14 11.7996 0.0452 4.1802 21 1 11.2125 -0.6953 5.3257 22 1 13.2376 -0.3026 4.0515 23 1 11.6619 1.5056 4.4119 24 6 6.6849 -0.9227 2.3079 25 6 5.4142 -0.1722 2.7117 26 6 6.3072 -2.2769 1.7043 27 7 4.3735 0.2557 0.0006 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.9511 3.4743 0.0003 32 1 10.0999 2.6611 0.0209 33 1 9.1434 3.8660 -0.8748 34 1 9.1353 3.8675 0.9052 35 1 6.4717 -1.2225 -0.2079 36 1 7.4687 0.1416 -0.7678 37 1 8.8578 -1.6548 1.1010 38 1 9.3051 -0.0910 0.3779 39 1 12.5162 -1.1342 1.6952 40 1 7.3098 -1.0783 3.1872 41 1 4.6996 -0.1987 1.8890 42 1 4.9754 -0.6466 3.5895 43 1 5.6622 0.8634 2.9442 44 1 7.1954 -2.7466 1.2814 45 1 5.8925 -2.9184 2.4820 46 1 5.5650 -2.1308 0.9197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765681606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:10 Heat of formation + Delta-G solvation = -59.803147 kcal Electronic energy + Delta-G solvation = -31517.931927 eV Core-core repulsion = 27218.428883 eV Total energy + Delta-G solvation = -4299.503045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.83322 -40.24081 -39.78855 -37.94976 -36.51234 -36.15141 -33.12353 -32.79500 -31.41081 -30.79975 -28.42895 -27.54482 -27.17144 -26.80522 -25.20127 -23.69272 -23.06895 -22.27504 -20.96068 -20.30887 -19.33071 -18.36193 -17.25688 -16.76190 -16.72017 -16.47866 -16.21421 -16.02127 -15.78993 -15.30505 -15.17664 -14.74156 -14.13940 -13.86361 -13.66248 -13.41891 -13.29901 -13.14161 -13.06273 -12.89705 -12.40972 -12.28734 -12.23295 -11.83740 -11.64384 -11.33569 -11.15496 -11.08080 -10.94450 -10.92888 -10.85524 -10.76602 -10.66741 -10.47283 -10.43584 -10.15328 -10.01129 -9.50872 -9.33185 -9.15871 -8.56967 -7.63019 -6.16745 -4.17613 1.08988 1.29787 2.18968 2.55681 2.93913 2.97930 3.14789 3.24597 3.29787 3.32909 4.17125 4.30288 4.58769 4.69332 4.93981 4.96878 5.02359 5.19886 5.24930 5.30182 5.33762 5.41298 5.44979 5.47037 5.53731 5.59696 5.65969 5.78885 5.98514 6.00690 6.06518 6.14952 6.20078 6.26198 6.39194 6.43641 6.57672 6.66066 6.70900 7.03937 7.12738 7.48239 7.60274 7.77439 7.84841 7.95550 7.96878 8.28885 8.88029 9.46380 10.93460 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.003795 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.944235 B = 7377.043946 C = 8556.528265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.343 6.343 3 C 0.562 3.438 4 O -0.502 6.502 5 C -0.031 4.031 6 C -0.097 4.097 7 C -0.003 4.003 8 C 0.545 3.455 9 O -0.504 6.504 10 O -0.320 6.320 11 C 0.045 3.955 12 N -0.223 5.223 13 C 0.265 3.735 14 N -0.528 5.528 15 C 0.205 3.795 16 C -0.503 4.503 17 H 0.062 0.938 18 C 0.060 3.940 19 N -0.897 5.897 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.077 3.923 25 C -0.156 4.156 26 C -0.185 4.185 27 N -0.193 5.193 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.175 0.825 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.115 0.885 37 H -0.002 1.002 38 H 0.041 0.959 39 H 0.263 0.737 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.515 0.992 -5.017 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.258 6.258 3 C 0.405 3.595 4 O -0.387 6.387 5 C -0.183 4.183 6 C -0.125 4.125 7 C -0.126 4.126 8 C 0.388 3.612 9 O -0.392 6.392 10 O -0.234 6.234 11 C -0.048 4.048 12 N -0.019 5.019 13 C 0.056 3.944 14 N -0.253 5.253 15 C 0.081 3.919 16 C -0.542 4.542 17 H 0.080 0.920 18 C -0.142 4.142 19 N -0.536 5.536 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.031 4.031 25 C -0.214 4.214 26 C -0.243 4.243 27 N -0.037 5.037 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.192 0.808 32 H 0.129 0.871 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.016 0.984 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.369 0.889 -4.916 14.272 hybrid contribution 0.535 0.420 0.737 1.003 sum -12.834 1.309 -4.179 13.561 Atomic orbital electron populations 1.23312 0.75969 1.03843 1.02620 1.86648 1.23324 1.31908 1.83929 1.19477 0.86092 0.81630 0.72324 1.90864 1.65447 1.36077 1.46352 1.20370 0.90979 0.90746 1.16226 1.21694 0.88869 0.99816 1.02128 1.20239 0.93514 0.84383 1.14509 1.19522 0.83151 0.85640 0.72924 1.90867 1.87318 1.14359 1.46675 1.86783 1.13932 1.39908 1.82731 1.23297 0.86172 0.93784 1.01577 1.46797 1.05317 1.04741 1.45059 1.22867 0.82193 0.92718 0.96578 1.62071 1.05213 1.55379 1.02641 1.19724 0.79170 0.93964 0.99075 1.20988 0.92746 1.40230 1.00207 0.91974 1.24905 0.97407 0.95314 0.96563 1.69925 1.08955 1.43479 1.31253 0.86601 0.78492 0.79059 0.83517 1.20304 1.21369 1.20196 1.21716 0.94656 0.90057 0.96672 1.22192 0.97460 1.00580 1.01174 1.22462 1.01509 0.98854 1.01485 1.73549 0.89926 1.26480 1.13758 0.91742 0.91775 0.87908 0.80776 0.87134 0.92627 0.91868 0.89213 0.86721 0.98443 0.94055 0.92758 0.88458 0.91993 0.93279 0.92728 0.92082 0.92535 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.37 16 2 O -0.34 -4.32 10.57 -40.55 -0.43 -4.75 16 3 C 0.56 8.05 7.97 34.56 0.28 8.32 16 4 O -0.50 -7.80 16.70 -19.26 -0.32 -8.13 16 5 C -0.03 -0.46 7.06 -82.94 -0.59 -1.05 16 6 C -0.10 -1.46 10.55 -38.98 -0.41 -1.87 16 7 C 0.00 -0.05 6.90 -82.49 -0.57 -0.62 16 8 C 0.54 9.25 7.94 34.31 0.27 9.52 16 9 O -0.50 -9.19 16.69 -19.30 -0.32 -9.51 16 10 O -0.32 -5.41 7.92 -40.80 -0.32 -5.74 16 11 C 0.05 0.66 10.57 101.05 1.07 1.73 16 12 N -0.22 -3.47 2.34 -60.46 -0.14 -3.61 16 13 C 0.27 4.18 4.72 -63.32 -0.30 3.88 16 14 N -0.53 -9.71 3.81 -231.97 -0.88 -10.59 16 15 C 0.20 4.49 4.64 -4.97 -0.02 4.47 16 16 C -0.50 -12.49 8.38 -34.44 -0.29 -12.78 16 17 H 0.06 1.58 7.36 -52.49 -0.39 1.19 16 18 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -24.03 13.29 55.43 0.74 -23.29 16 20 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.08 1.35 2.74 -67.71 -0.19 1.17 16 25 C -0.16 -2.56 8.63 37.16 0.32 -2.24 16 26 C -0.18 -2.83 8.01 37.16 0.30 -2.53 16 27 N -0.19 -2.95 9.42 33.32 0.31 -2.64 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.17 2.39 8.06 -52.49 -0.42 1.97 16 32 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.32 5.39 -51.93 -0.28 1.04 16 36 H 0.12 1.75 6.83 -51.93 -0.35 1.40 16 37 H 0.00 -0.05 6.74 -51.93 -0.35 -0.40 16 38 H 0.04 0.96 7.74 -51.93 -0.40 0.56 16 39 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.10 1.92 6.76 -51.93 -0.35 1.57 16 41 H 0.06 1.00 4.44 -51.92 -0.23 0.77 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.99 6.79 -51.93 -0.35 0.64 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.83 6.46 -51.93 -0.34 0.50 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -28.83 383.84 -6.17 -35.00 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.40 Total: 1.47 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 0.84 Total: 10.81 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.03 Total: -40.13 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -1.40 Total: -28.12 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.83 -6.17 -35.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765681606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.804 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds