Wall clock time and date at job start Tue Mar 31 2020 22:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34720 * 116.99897 * 2 1 4 4 O 1.21490 * 119.99968 * 0.02562 * 3 2 1 5 5 C 1.47631 * 120.00126 * 179.97438 * 3 2 1 6 6 C 1.40925 * 126.26971 * 179.97438 * 5 3 2 7 7 C 1.37087 * 105.46389 * 180.02562 * 6 5 3 8 8 C 1.47054 * 126.64986 * 180.26748 * 7 6 5 9 9 O 1.21543 * 120.00053 * 359.68125 * 8 7 6 10 10 O 1.34812 * 119.99700 * 179.68652 * 8 7 6 11 11 C 1.45206 * 116.99746 * 179.97438 * 10 8 7 12 12 N 1.36813 * 106.69738 * 0.02562 * 7 6 5 13 13 C 1.46500 * 125.06287 * 179.97438 * 12 7 6 14 14 N 1.46895 * 109.47301 * 71.67495 * 13 12 7 15 15 C 1.46907 * 111.00076 * 200.20093 * 14 13 12 16 16 C 1.50700 * 109.47126 * 166.71601 * 15 14 13 17 17 H 1.08002 * 120.00367 * 4.44653 * 16 15 14 18 18 C 1.37875 * 119.99996 * 184.45151 * 16 15 14 19 19 N 1.31519 * 120.00061 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00186 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47247 * 59.99804 * 20 18 16 22 22 H 1.48502 * 109.47355 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46939 * 299.99689 * 20 18 16 24 24 C 1.46901 * 111.00272 * 76.25097 * 14 13 12 25 25 C 1.53003 * 109.46818 * 285.24162 * 24 14 13 26 26 C 1.52998 * 109.47071 * 45.23809 * 24 14 13 27 27 N 1.28449 * 109.87436 * 359.97438 * 12 7 6 28 28 H 1.08998 * 109.47058 * 299.99389 * 1 2 3 29 29 H 1.08991 * 109.47327 * 60.00191 * 1 2 3 30 30 H 1.09005 * 109.46771 * 180.02562 * 1 2 3 31 31 H 1.07997 * 127.27022 * 0.06258 * 6 5 3 32 32 H 1.08996 * 109.47033 * 179.97438 * 11 10 8 33 33 H 1.09001 * 109.46843 * 299.99785 * 11 10 8 34 34 H 1.09004 * 109.46804 * 59.99713 * 11 10 8 35 35 H 1.09000 * 109.47027 * 191.67468 * 13 12 7 36 36 H 1.08998 * 109.46984 * 311.67303 * 13 12 7 37 37 H 1.09000 * 109.47277 * 286.71448 * 15 14 13 38 38 H 1.09002 * 109.46775 * 46.71821 * 15 14 13 39 39 H 0.96997 * 119.99937 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.47382 * 165.24622 * 24 14 13 41 41 H 1.09007 * 109.46746 * 71.77125 * 25 24 14 42 42 H 1.08999 * 109.47018 * 191.77065 * 25 24 14 43 43 H 1.08999 * 109.47088 * 311.77383 * 25 24 14 44 44 H 1.09004 * 109.47092 * 51.57794 * 26 24 14 45 45 H 1.09005 * 109.47270 * 171.57041 * 26 24 14 46 46 H 1.08997 * 109.47439 * 291.57547 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5379 1.2777 0.0006 6 6 4.3109 2.4560 0.0001 7 6 5.6161 2.0369 0.0004 8 6 6.8126 2.8918 0.0056 9 8 6.6952 4.1015 0.0044 10 8 8.0398 2.3336 0.0115 11 6 9.1754 3.2385 0.0159 12 7 5.5897 0.6690 0.0003 13 6 6.7724 -0.1956 0.0000 14 7 7.4250 -0.1331 1.3145 15 6 8.8241 -0.5729 1.2291 16 6 9.5479 -0.1943 2.4956 17 1 9.0054 0.2565 3.3134 18 6 10.9026 -0.4234 2.6101 19 7 11.5632 -0.9728 1.6144 20 14 11.7996 0.0452 4.1802 21 1 11.2125 -0.6953 5.3257 22 1 13.2376 -0.3026 4.0515 23 1 11.6619 1.5056 4.4119 24 6 6.6849 -0.9227 2.3079 25 6 5.4142 -0.1722 2.7117 26 6 6.3072 -2.2769 1.7043 27 7 4.3735 0.2557 0.0006 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.9511 3.4743 0.0003 32 1 10.0999 2.6611 0.0209 33 1 9.1434 3.8660 -0.8748 34 1 9.1353 3.8675 0.9052 35 1 6.4717 -1.2225 -0.2079 36 1 7.4687 0.1416 -0.7678 37 1 8.8578 -1.6548 1.1010 38 1 9.3051 -0.0910 0.3779 39 1 12.5162 -1.1342 1.6952 40 1 7.3098 -1.0783 3.1872 41 1 4.6996 -0.1987 1.8890 42 1 4.9754 -0.6466 3.5895 43 1 5.6622 0.8634 2.9442 44 1 7.1954 -2.7466 1.2814 45 1 5.8925 -2.9184 2.4820 46 1 5.5650 -2.1308 0.9197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765681606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:09 Heat of formation + Delta-G solvation = -75.438001 kcal Electronic energy + Delta-G solvation = -31518.609905 eV Core-core repulsion = 27218.428883 eV Total energy + Delta-G solvation = -4300.181023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.06317 -41.33067 -41.07590 -39.38920 -37.55388 -37.48432 -34.92880 -34.13637 -32.70509 -32.26790 -29.59262 -28.83206 -28.36794 -28.11528 -26.65893 -24.88967 -24.30844 -24.00075 -22.19023 -21.51834 -20.70959 -19.56244 -18.49394 -18.14959 -18.03414 -17.90062 -17.37291 -17.30435 -17.20150 -16.56973 -16.48163 -16.41564 -15.62929 -15.01689 -14.85870 -14.69680 -14.50342 -14.42723 -14.30014 -14.15406 -14.03233 -13.66988 -13.23180 -13.08450 -13.00101 -12.78628 -12.72470 -12.57503 -12.47109 -12.35271 -12.16748 -11.95965 -11.85380 -11.80396 -11.72960 -11.71563 -11.53401 -11.33851 -10.61106 -10.53616 -10.39839 -9.14723 -8.13782 -6.19306 -0.18133 0.13775 0.99263 1.40784 1.44379 1.45982 1.52589 1.69196 1.82626 1.95022 2.43873 2.96185 3.17989 3.25704 3.42236 3.84035 3.99769 4.04772 4.10679 4.19525 4.28126 4.30594 4.32584 4.36587 4.39745 4.41014 4.45970 4.71056 4.74990 4.76374 4.80888 4.93623 4.96305 5.02166 5.15712 5.18496 5.22237 5.23209 5.27861 5.45896 5.49919 5.70208 6.06109 6.29389 6.35604 6.53067 6.58246 6.73490 6.92238 7.47865 8.95652 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.003795 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.944235 B = 7377.043946 C = 8556.528265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.567 3.433 4 O -0.517 6.517 5 C -0.032 4.032 6 C -0.091 4.091 7 C -0.015 4.015 8 C 0.547 3.453 9 O -0.521 6.521 10 O -0.331 6.331 11 C 0.043 3.957 12 N -0.224 5.224 13 C 0.270 3.730 14 N -0.535 5.535 15 C 0.224 3.776 16 C -0.508 4.508 17 H 0.052 0.948 18 C 0.018 3.982 19 N -0.924 5.924 20 Si 0.949 3.051 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.076 3.924 25 C -0.144 4.144 26 C -0.174 4.174 27 N -0.191 5.191 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.134 0.866 31 H 0.186 0.814 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.119 0.881 37 H -0.018 1.018 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.035 0.965 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.037 0.619 -4.914 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.409 3.591 4 O -0.405 6.405 5 C -0.184 4.184 6 C -0.119 4.119 7 C -0.138 4.138 8 C 0.391 3.609 9 O -0.410 6.410 10 O -0.245 6.245 11 C -0.050 4.050 12 N -0.020 5.020 13 C 0.061 3.939 14 N -0.260 5.260 15 C 0.099 3.901 16 C -0.546 4.546 17 H 0.071 0.929 18 C -0.181 4.181 19 N -0.565 5.565 20 Si 0.775 3.225 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.032 4.032 25 C -0.202 4.202 26 C -0.233 4.233 27 N -0.034 5.034 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.203 0.797 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.136 0.864 37 H -0.001 1.001 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.915 0.506 -4.809 15.679 hybrid contribution 0.894 0.519 0.695 1.245 sum -14.021 1.025 -4.115 14.648 Atomic orbital electron populations 1.23687 0.73580 1.06106 1.03106 1.86631 1.25645 1.30759 1.83327 1.19339 0.85707 0.81989 0.72022 1.90857 1.65657 1.36718 1.47238 1.20558 0.91593 0.90537 1.15720 1.21880 0.88482 1.00484 1.01068 1.20244 0.93538 0.84551 1.15472 1.19635 0.83336 0.85545 0.72415 1.90850 1.87517 1.14969 1.47643 1.86769 1.14421 1.40733 1.82623 1.23397 0.85437 0.93696 1.02464 1.46646 1.05324 1.04488 1.45521 1.22830 0.82369 0.93548 0.95144 1.61877 1.03976 1.55775 1.04334 1.19295 0.81015 0.92565 0.97207 1.21222 0.93040 1.39454 1.00926 0.92937 1.25528 0.98203 0.95464 0.98916 1.70012 1.09085 1.44669 1.32736 0.85757 0.77420 0.78739 0.80566 1.20115 1.21202 1.19932 1.21690 0.94490 0.91373 0.95657 1.22077 0.96820 0.99369 1.01947 1.22347 1.01286 0.97571 1.02066 1.73530 0.89699 1.26540 1.13637 0.91405 0.91201 0.84815 0.79714 0.87343 0.90536 0.92219 0.87733 0.86371 1.00074 0.95468 0.92828 0.91052 0.91556 0.91702 0.94547 0.93214 0.91034 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -7.97 10.57 -56.30 -0.60 -8.57 16 3 C 0.57 15.20 7.97 70.30 0.56 15.76 16 4 O -0.52 -15.28 16.70 19.87 0.33 -14.95 16 5 C -0.03 -0.89 7.06 42.26 0.30 -0.60 16 6 C -0.09 -2.64 10.55 22.66 0.24 -2.40 16 7 C -0.01 -0.47 6.90 40.41 0.28 -0.19 16 8 C 0.55 18.38 7.94 70.13 0.56 18.94 16 9 O -0.52 -18.74 16.69 19.70 0.33 -18.41 16 10 O -0.33 -11.22 7.92 -57.24 -0.45 -11.67 16 11 C 0.04 1.26 10.57 113.37 1.20 2.46 16 12 N -0.22 -6.71 2.34 -345.19 -0.81 -7.52 16 13 C 0.27 8.30 4.72 170.81 0.81 9.10 16 14 N -0.53 -19.60 3.81 -887.81 -3.38 -22.98 16 15 C 0.22 9.98 4.64 85.56 0.40 10.38 16 16 C -0.51 -25.49 8.38 25.60 0.21 -25.28 16 17 H 0.05 2.70 7.36 -2.91 -0.02 2.68 16 18 C 0.02 0.92 5.46 84.65 0.46 1.38 16 19 N -0.92 -49.94 13.29 21.45 0.28 -49.66 16 20 Si 0.95 41.47 29.54 68.60 2.03 43.50 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 C 0.08 2.61 2.74 44.92 0.12 2.74 16 25 C -0.14 -4.55 8.63 71.98 0.62 -3.92 16 26 C -0.17 -5.09 8.01 71.98 0.58 -4.51 16 27 N -0.19 -5.49 9.42 -48.50 -0.46 -5.95 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.19 4.86 8.06 -2.91 -0.02 4.83 16 32 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.11 2.92 5.39 -2.39 -0.01 2.91 16 36 H 0.12 3.56 6.83 -2.39 -0.02 3.55 16 37 H -0.02 -0.87 6.74 -2.39 -0.02 -0.89 16 38 H 0.03 1.29 7.74 -2.39 -0.02 1.27 16 39 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 40 H 0.07 2.83 6.76 -2.39 -0.02 2.81 16 41 H 0.07 2.03 4.44 -2.38 -0.01 2.02 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.05 1.57 6.79 -2.39 -0.02 1.55 16 45 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.07 1.85 6.46 -2.39 -0.02 1.83 16 Total: -1.00 -60.52 383.84 5.82 -54.71 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.01 Total: 16.04 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 7.53 Total: 25.45 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -4.36 Total: -86.10 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.39 Total: -53.60 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -60.52 5.82 -54.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765681606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.730 kcal (2) G-P(sol) polarization free energy of solvation -60.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds