Wall clock time and date at job start Tue Mar 31 2020 22:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47497 * 240.00350 * 2 1 3 5 5 O 1.45195 * 109.47224 * 120.00099 * 2 1 3 6 6 C 1.34638 * 117.00135 * 60.00489 * 5 2 1 7 7 O 1.21513 * 119.99867 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99828 * 180.27525 * 8 6 5 10 10 H 1.09004 * 109.47372 * 34.71852 * 9 8 6 11 11 C 1.52999 * 109.46963 * 154.72290 * 9 8 6 12 12 C 1.52997 * 109.47080 * 294.99494 * 11 9 8 13 13 C 1.50701 * 109.47234 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00351 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99551 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00274 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47094 * 60.00336 * 17 15 13 19 19 H 1.48501 * 109.47133 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47486 * 300.00205 * 17 15 13 21 21 C 1.50701 * 109.46815 * 274.72090 * 9 8 6 22 22 O 1.21272 * 120.00277 * 0.02562 * 21 9 8 23 23 N 1.34781 * 119.99914 * 180.02562 * 21 9 8 24 24 C 1.39499 * 120.00232 * 179.97438 * 23 21 9 25 25 C 1.42032 * 126.89134 * 0.02562 * 24 23 21 26 26 C 1.35247 * 103.95361 * 179.97438 * 25 24 23 27 27 O 1.34085 * 106.61027 * 0.02562 * 26 25 24 28 28 N 1.20910 * 111.74671 * 359.72992 * 27 26 25 29 29 H 1.08996 * 109.47509 * 299.99293 * 1 2 3 30 30 H 1.09006 * 109.47298 * 59.99979 * 1 2 3 31 31 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47042 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47205 * 300.00164 * 3 2 1 34 34 H 1.09001 * 109.46587 * 60.00389 * 3 2 1 35 35 H 1.09003 * 109.46840 * 300.00288 * 4 2 1 36 36 H 1.09006 * 109.47115 * 59.99560 * 4 2 1 37 37 H 1.08995 * 109.47291 * 179.97438 * 4 2 1 38 38 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 39 39 H 1.08997 * 109.47492 * 54.99915 * 11 9 8 40 40 H 1.09007 * 109.47243 * 174.99697 * 11 9 8 41 41 H 1.09002 * 109.47641 * 299.99883 * 12 11 9 42 42 H 1.08998 * 109.46968 * 60.00255 * 12 11 9 43 43 H 0.97000 * 119.99723 * 179.97438 * 16 15 13 44 44 H 0.97007 * 119.99770 * 0.02562 * 23 21 9 45 45 H 1.08002 * 128.01966 * 359.95506 * 25 24 23 46 46 H 1.07998 * 126.69323 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6788 -4.0686 2.5801 10 1 1.6321 -4.5487 1.6026 11 6 2.7115 -4.7857 3.4519 12 6 4.0570 -4.8204 2.7244 13 6 5.0741 -5.5273 3.5828 14 1 4.7894 -5.9129 4.5507 15 6 6.3684 -5.6809 3.1332 16 7 6.7152 -5.2109 1.9548 17 14 7.6293 -6.5565 4.1974 18 1 7.1745 -7.9452 4.4625 19 1 8.9352 -6.5903 3.4913 20 1 7.7804 -5.8310 5.4843 21 6 0.3262 -4.1416 3.2406 22 8 -0.2560 -3.1222 3.5447 23 7 -0.2365 -5.3400 3.4934 24 6 -1.4882 -5.4077 4.1053 25 6 -2.2946 -4.3147 4.5206 26 6 -3.3933 -4.9015 5.0473 27 8 -3.2123 -6.2253 4.9343 28 7 -2.1567 -6.4897 4.4072 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7207 -1.2495 38 1 2.6269 -2.2366 3.0832 39 1 2.8226 -4.2530 4.3963 40 1 2.3775 -5.8049 3.6468 41 1 3.9460 -5.3532 1.7801 42 1 4.3910 -3.8013 2.5295 43 1 7.6259 -5.3186 1.6386 44 1 0.2294 -6.1555 3.2505 45 1 -2.0798 -3.2596 4.4357 46 1 -4.2492 -4.4015 5.4760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819458713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:22 Heat of formation + Delta-G solvation = -57.577471 kcal Electronic energy + Delta-G solvation = -30249.835471 eV Core-core repulsion = 25950.428939 eV Total energy + Delta-G solvation = -4299.406532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.92559 -40.83320 -39.98186 -37.36143 -35.62926 -35.40887 -34.04693 -33.14038 -32.59531 -31.58966 -30.97049 -27.78074 -27.40451 -27.32448 -24.52094 -23.63936 -22.78908 -21.83747 -21.05815 -20.29015 -19.88880 -18.39668 -18.04791 -17.63986 -17.37903 -16.85106 -16.38611 -16.17893 -15.76927 -15.26381 -15.02972 -14.52828 -14.45064 -14.32682 -14.07754 -13.76756 -13.42987 -13.25444 -13.02265 -12.50058 -12.36052 -12.17918 -12.12674 -11.86491 -11.83305 -11.67100 -11.51079 -11.43825 -11.24685 -11.07417 -10.97578 -10.77663 -10.36001 -10.23664 -10.16833 -9.86530 -9.80605 -9.67170 -9.29164 -8.92922 -8.87682 -8.46259 -6.11295 -4.15633 1.36837 1.95764 2.16850 2.59708 2.83674 3.13346 3.26522 3.26954 3.32482 3.34121 4.24293 4.29937 4.36668 4.59829 4.74533 4.79251 4.93155 4.96288 5.11043 5.12479 5.24943 5.34469 5.40452 5.45192 5.54103 5.64584 5.68160 5.77910 5.84180 5.89944 5.93598 5.98471 6.24231 6.28498 6.33076 6.35065 6.50558 6.66662 6.69095 7.04952 7.48893 7.55897 7.62952 7.84778 7.91848 8.23353 8.24303 8.59890 8.90264 9.49757 10.99346 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005871 B = 0.004563 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4768.066624 B = 6135.015482 C =10442.158976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.361 6.361 6 C 0.662 3.338 7 O -0.573 6.573 8 N -0.678 5.678 9 C 0.157 3.843 10 H 0.123 0.877 11 C -0.118 4.118 12 C 0.025 3.975 13 C -0.529 4.529 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.516 3.484 22 O -0.510 6.510 23 N -0.631 5.631 24 C 0.251 3.749 25 C -0.226 4.226 26 C -0.056 4.056 27 O 0.094 5.906 28 N -0.392 5.392 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.414 0.586 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.021 0.979 42 H 0.024 0.976 43 H 0.263 0.737 44 H 0.423 0.577 45 H 0.189 0.811 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.990 8.308 0.036 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.276 6.276 6 C 0.416 3.584 7 O -0.463 6.463 8 N -0.336 5.336 9 C 0.048 3.952 10 H 0.141 0.859 11 C -0.156 4.156 12 C -0.012 4.012 13 C -0.567 4.567 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.302 3.698 22 O -0.382 6.382 23 N -0.284 5.284 24 C 0.001 3.999 25 C -0.249 4.249 26 C -0.137 4.137 27 O 0.034 5.966 28 N -0.108 5.108 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.250 0.750 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.261 0.739 45 H 0.206 0.794 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -16.342 7.637 -0.499 18.045 hybrid contribution 1.233 0.214 0.658 1.414 sum -15.108 7.851 0.159 17.027 Atomic orbital electron populations 1.22499 0.94207 1.05080 1.02090 1.22023 0.94171 0.91473 0.82353 1.21851 1.02428 0.92651 1.02816 1.22525 1.01912 1.03543 0.96168 1.86300 1.71557 1.23544 1.46172 1.17925 0.78134 0.80419 0.81969 1.90862 1.41362 1.70392 1.43662 1.44190 1.54393 1.11089 1.23899 1.21022 0.89799 0.82059 1.02319 0.85902 1.22108 0.96453 0.98713 0.98323 1.19112 0.88455 0.98091 0.95536 1.21107 0.94739 1.37437 1.03379 0.92561 1.24994 0.98532 0.95557 0.95040 1.69949 1.19034 1.45606 1.18303 0.86649 0.80603 0.80232 0.80478 1.20183 1.21258 1.20204 1.21827 0.88318 0.81910 0.77709 1.90605 1.63185 1.34177 1.50226 1.42682 1.15386 1.11111 1.59180 1.20707 0.89770 0.90555 0.98851 1.23059 0.93942 1.02179 1.05728 1.25946 1.01631 0.83340 1.02825 1.84807 1.28920 1.24265 1.58610 1.74059 0.96572 1.21551 1.18648 0.92292 0.91464 0.89362 0.91326 0.90354 0.91586 0.89258 0.91443 0.91876 0.74955 0.91383 0.90595 0.96049 0.95725 0.92774 0.73941 0.79421 0.76517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 8.37 37.16 0.31 -1.96 16 2 C 0.14 1.79 1.13 -90.62 -0.10 1.68 16 3 C -0.14 -1.40 8.85 37.16 0.33 -1.07 16 4 C -0.18 -2.40 8.37 37.16 0.31 -2.09 16 5 O -0.36 -5.74 9.94 -40.32 -0.40 -6.14 16 6 C 0.66 11.49 7.90 54.06 0.43 11.91 16 7 O -0.57 -10.69 11.54 -19.28 -0.22 -10.91 16 8 N -0.68 -11.12 4.06 -59.86 -0.24 -11.37 16 9 C 0.16 2.48 2.38 -69.08 -0.16 2.32 16 10 H 0.12 1.99 7.57 -51.93 -0.39 1.60 16 11 C -0.12 -2.01 4.64 -26.73 -0.12 -2.13 16 12 C 0.03 0.57 4.86 -27.88 -0.14 0.43 16 13 C -0.53 -13.67 9.11 -34.44 -0.31 -13.98 16 14 H 0.06 1.40 7.74 -52.49 -0.41 1.00 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 17 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.52 8.03 7.16 -10.98 -0.08 7.95 16 22 O -0.51 -8.82 13.61 5.56 0.08 -8.75 16 23 N -0.63 -8.80 5.28 -11.43 -0.06 -8.86 16 24 C 0.25 3.60 8.18 -154.83 -1.27 2.34 16 25 C -0.23 -2.87 9.86 -39.19 -0.39 -3.26 16 26 C -0.06 -0.53 12.28 29.67 0.36 -0.16 16 27 O 0.09 1.12 11.19 17.06 0.19 1.31 16 28 N -0.39 -5.55 12.10 31.19 0.38 -5.18 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.39 5.88 -51.93 -0.31 1.08 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.41 6.38 8.71 -40.82 -0.36 6.02 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.18 7.43 -51.93 -0.39 0.80 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.59 7.75 -51.93 -0.40 0.19 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.42 5.10 8.18 -40.82 -0.33 4.76 16 45 H 0.19 2.52 6.22 -52.49 -0.33 2.19 16 46 H 0.22 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -32.65 385.42 -6.26 -38.91 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.58 Total: 10.67 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.93 Total: 3.53 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.81 Total: -50.06 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.36 Total: -24.49 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.65 -6.26 -38.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819458713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.669 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds