Wall clock time and date at job start Tue Mar 31 2020 22:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47497 * 240.00350 * 2 1 3 5 5 O 1.45195 * 109.47224 * 120.00099 * 2 1 3 6 6 C 1.34638 * 117.00135 * 60.00489 * 5 2 1 7 7 O 1.21513 * 119.99867 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99828 * 180.27525 * 8 6 5 10 10 H 1.09004 * 109.47372 * 34.71852 * 9 8 6 11 11 C 1.52999 * 109.46963 * 154.72290 * 9 8 6 12 12 C 1.52997 * 109.47080 * 294.99494 * 11 9 8 13 13 C 1.50701 * 109.47234 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00351 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99551 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00274 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47094 * 60.00336 * 17 15 13 19 19 H 1.48501 * 109.47133 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47486 * 300.00205 * 17 15 13 21 21 C 1.50701 * 109.46815 * 274.72090 * 9 8 6 22 22 O 1.21272 * 120.00277 * 0.02562 * 21 9 8 23 23 N 1.34781 * 119.99914 * 180.02562 * 21 9 8 24 24 C 1.39499 * 120.00232 * 179.97438 * 23 21 9 25 25 C 1.42032 * 126.89134 * 0.02562 * 24 23 21 26 26 C 1.35247 * 103.95361 * 179.97438 * 25 24 23 27 27 O 1.34085 * 106.61027 * 0.02562 * 26 25 24 28 28 N 1.20910 * 111.74671 * 359.72992 * 27 26 25 29 29 H 1.08996 * 109.47509 * 299.99293 * 1 2 3 30 30 H 1.09006 * 109.47298 * 59.99979 * 1 2 3 31 31 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47042 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47205 * 300.00164 * 3 2 1 34 34 H 1.09001 * 109.46587 * 60.00389 * 3 2 1 35 35 H 1.09003 * 109.46840 * 300.00288 * 4 2 1 36 36 H 1.09006 * 109.47115 * 59.99560 * 4 2 1 37 37 H 1.08995 * 109.47291 * 179.97438 * 4 2 1 38 38 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 39 39 H 1.08997 * 109.47492 * 54.99915 * 11 9 8 40 40 H 1.09007 * 109.47243 * 174.99697 * 11 9 8 41 41 H 1.09002 * 109.47641 * 299.99883 * 12 11 9 42 42 H 1.08998 * 109.46968 * 60.00255 * 12 11 9 43 43 H 0.97000 * 119.99723 * 179.97438 * 16 15 13 44 44 H 0.97007 * 119.99770 * 0.02562 * 23 21 9 45 45 H 1.08002 * 128.01966 * 359.95506 * 25 24 23 46 46 H 1.07998 * 126.69323 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6788 -4.0686 2.5801 10 1 1.6321 -4.5487 1.6026 11 6 2.7115 -4.7857 3.4519 12 6 4.0570 -4.8204 2.7244 13 6 5.0741 -5.5273 3.5828 14 1 4.7894 -5.9129 4.5507 15 6 6.3684 -5.6809 3.1332 16 7 6.7152 -5.2109 1.9548 17 14 7.6293 -6.5565 4.1974 18 1 7.1745 -7.9452 4.4625 19 1 8.9352 -6.5903 3.4913 20 1 7.7804 -5.8310 5.4843 21 6 0.3262 -4.1416 3.2406 22 8 -0.2560 -3.1222 3.5447 23 7 -0.2365 -5.3400 3.4934 24 6 -1.4882 -5.4077 4.1053 25 6 -2.2946 -4.3147 4.5206 26 6 -3.3933 -4.9015 5.0473 27 8 -3.2123 -6.2253 4.9343 28 7 -2.1567 -6.4897 4.4072 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7207 -1.2495 38 1 2.6269 -2.2366 3.0832 39 1 2.8226 -4.2530 4.3963 40 1 2.3775 -5.8049 3.6468 41 1 3.9460 -5.3532 1.7801 42 1 4.3910 -3.8013 2.5295 43 1 7.6259 -5.3186 1.6386 44 1 0.2294 -6.1555 3.2505 45 1 -2.0798 -3.2596 4.4357 46 1 -4.2492 -4.4015 5.4760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819458713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:21 Heat of formation + Delta-G solvation = -79.155280 kcal Electronic energy + Delta-G solvation = -30250.771155 eV Core-core repulsion = 25950.428939 eV Total energy + Delta-G solvation = -4300.342216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.91299 -42.11091 -41.20290 -38.58856 -36.93446 -36.71332 -35.33174 -34.83861 -33.63053 -32.79450 -32.37543 -29.38835 -28.35209 -28.28314 -26.20221 -24.79999 -23.89118 -23.01807 -22.56171 -21.57519 -21.09578 -19.40537 -19.28677 -18.84820 -18.63324 -18.08529 -17.92489 -17.46768 -17.01296 -16.57009 -16.46047 -16.13682 -15.67345 -15.51277 -15.22865 -14.84398 -14.69467 -14.43964 -14.16647 -14.12185 -13.74013 -13.33995 -13.15054 -12.97897 -12.89938 -12.85483 -12.82540 -12.62378 -12.55565 -12.50944 -12.48831 -12.32625 -11.86682 -11.82154 -11.40727 -11.36218 -11.17650 -11.14199 -10.70274 -10.52808 -10.28102 -9.95449 -8.17266 -6.27505 0.42199 0.92147 0.97153 1.41879 1.44324 1.45051 1.52747 1.68690 1.84462 2.42840 2.45592 3.10171 3.17790 3.22360 3.48335 3.73926 3.76946 3.81364 3.93259 3.95879 3.98315 4.25153 4.45995 4.56884 4.62154 4.63077 4.72991 4.77323 4.77389 4.84461 4.88593 4.90717 5.00505 5.05290 5.17753 5.26918 5.30030 5.36192 5.52274 5.53666 5.67550 5.85107 5.94935 6.21940 6.31122 6.72258 6.89368 7.27984 7.30734 7.42049 8.93648 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005871 B = 0.004563 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4768.066624 B = 6135.015482 C =10442.158976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.181 4.181 5 O -0.369 6.369 6 C 0.656 3.344 7 O -0.591 6.591 8 N -0.680 5.680 9 C 0.165 3.835 10 H 0.117 0.883 11 C -0.100 4.100 12 C 0.031 3.969 13 C -0.540 4.540 14 H 0.065 0.935 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.957 3.043 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.268 1.268 21 C 0.523 3.477 22 O -0.527 6.527 23 N -0.624 5.624 24 C 0.226 3.774 25 C -0.258 4.258 26 C -0.016 4.016 27 O 0.097 5.903 28 N -0.411 5.411 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.417 0.583 39 H 0.076 0.924 40 H 0.095 0.905 41 H -0.004 1.004 42 H 0.004 0.996 43 H 0.262 0.738 44 H 0.430 0.570 45 H 0.179 0.821 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.395 8.831 1.236 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.410 3.590 7 O -0.482 6.482 8 N -0.338 5.338 9 C 0.056 3.944 10 H 0.134 0.866 11 C -0.138 4.138 12 C -0.006 4.006 13 C -0.578 4.578 14 H 0.084 0.916 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.782 3.218 18 H -0.193 1.193 19 H -0.215 1.215 20 H -0.193 1.193 21 C 0.309 3.691 22 O -0.401 6.401 23 N -0.277 5.277 24 C -0.023 4.023 25 C -0.281 4.281 26 C -0.097 4.097 27 O 0.037 5.963 28 N -0.127 5.127 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.254 0.746 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.015 0.985 42 H 0.022 0.978 43 H 0.070 0.930 44 H 0.269 0.731 45 H 0.196 0.804 46 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -17.750 8.138 0.717 19.540 hybrid contribution 1.559 0.081 0.268 1.584 sum -16.191 8.219 0.985 18.184 Atomic orbital electron populations 1.22431 0.93725 1.03473 1.03592 1.22488 0.94786 0.92848 0.81309 1.21886 1.02314 0.90415 1.04519 1.22486 1.01428 1.02235 0.97655 1.86315 1.71666 1.22727 1.47640 1.18092 0.78025 0.80962 0.81877 1.90853 1.42150 1.70918 1.44241 1.44240 1.54377 1.11250 1.23900 1.20830 0.89965 0.81809 1.01788 0.86553 1.21847 0.93841 1.00236 0.97889 1.18944 0.90930 0.96068 0.94705 1.21609 0.95422 1.36836 1.03904 0.91632 1.25856 1.00828 0.96468 0.96186 1.70087 1.19382 1.47365 1.20164 0.85620 0.77880 0.79389 0.78869 1.19269 1.21465 1.19305 1.21508 0.87949 0.82169 0.77513 1.90599 1.63565 1.34901 1.51048 1.42496 1.15618 1.10808 1.58770 1.21008 0.90026 0.91485 0.99760 1.23102 0.95358 1.01671 1.07972 1.26801 1.01517 0.81825 0.99581 1.84774 1.28021 1.25580 1.57926 1.74070 0.97323 1.21877 1.19394 0.92102 0.88598 0.92418 0.91544 0.87429 0.91070 0.92219 0.88489 0.92529 0.74564 0.90570 0.88710 0.98528 0.97773 0.92959 0.73146 0.80367 0.71210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.25 8.37 71.98 0.60 -3.65 16 2 C 0.12 3.12 1.13 -10.79 -0.01 3.11 16 3 C -0.13 -2.43 8.85 71.98 0.64 -1.80 16 4 C -0.18 -4.70 8.37 71.98 0.60 -4.10 16 5 O -0.37 -11.96 9.94 -55.48 -0.55 -12.51 16 6 C 0.66 23.63 7.90 129.79 1.03 24.65 16 7 O -0.59 -23.00 11.54 19.80 0.23 -22.77 16 8 N -0.68 -23.08 4.06 -573.72 -2.33 -25.41 16 9 C 0.16 5.36 2.38 44.25 0.11 5.46 16 10 H 0.12 3.95 7.57 -2.39 -0.02 3.94 16 11 C -0.10 -3.43 4.64 30.59 0.14 -3.29 16 12 C 0.03 1.43 4.86 29.85 0.15 1.58 16 13 C -0.54 -28.01 9.11 25.60 0.23 -27.77 16 14 H 0.07 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.00 0.27 5.46 84.65 0.46 0.73 16 16 N -0.93 -54.22 13.29 21.45 0.28 -53.94 16 17 Si 0.96 42.32 29.54 68.60 2.03 44.34 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 21 C 0.52 16.41 7.16 87.66 0.63 17.04 16 22 O -0.53 -18.45 13.61 -3.01 -0.04 -18.50 16 23 N -0.62 -17.39 5.28 -309.53 -1.64 -19.02 16 24 C 0.23 6.36 8.18 134.11 1.10 7.45 16 25 C -0.26 -6.24 9.86 22.52 0.22 -6.02 16 26 C -0.02 -0.26 12.28 67.13 0.82 0.57 16 27 O 0.10 2.09 11.19 71.23 0.80 2.89 16 28 N -0.41 -11.18 12.10 -56.32 -0.68 -11.86 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 1.78 5.88 -2.39 -0.01 1.77 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.92 5.88 -2.39 -0.01 1.91 16 36 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.42 13.30 8.71 -92.71 -0.81 12.49 16 39 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.09 2.89 7.43 -2.38 -0.02 2.87 16 41 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.00 0.20 7.75 -2.39 -0.02 0.18 16 43 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.43 10.32 8.18 -92.70 -0.76 9.56 16 45 H 0.18 4.71 6.22 -2.91 -0.02 4.69 16 46 H 0.27 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -72.71 385.42 4.27 -68.44 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: -0.54 Total: 34.37 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 6.71 Total: 13.97 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -4.36 Total: -110.23 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: 0.43 Total: -50.89 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -72.71 4.27 -68.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819458713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.719 kcal (2) G-P(sol) polarization free energy of solvation -72.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds