Wall clock time and date at job start Tue Mar 31 2020 22:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47584 * 2 1 4 4 C 1.53007 * 109.47066 * 240.00032 * 2 1 3 5 5 O 1.45204 * 109.47156 * 120.00288 * 2 1 3 6 6 C 1.34635 * 116.99932 * 59.99939 * 5 2 1 7 7 O 1.21517 * 119.99965 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00087 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00075 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47092 * 324.99806 * 9 8 6 11 11 C 1.53000 * 109.47023 * 204.99547 * 9 8 6 12 12 C 1.53006 * 109.46846 * 65.00406 * 11 9 8 13 13 C 1.50701 * 109.47024 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99939 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99968 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99808 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47109 * 90.00453 * 17 15 13 19 19 H 1.48498 * 109.47260 * 209.99830 * 17 15 13 20 20 H 1.48494 * 109.47293 * 330.00082 * 17 15 13 21 21 C 1.50703 * 109.47155 * 84.99845 * 9 8 6 22 22 O 1.21278 * 119.99818 * 359.97438 * 21 9 8 23 23 N 1.34777 * 119.99991 * 180.02562 * 21 9 8 24 24 C 1.39496 * 119.99757 * 180.02562 * 23 21 9 25 25 C 1.42027 * 126.89718 * 359.70836 * 24 23 21 26 26 C 1.35247 * 103.95646 * 179.85254 * 25 24 23 27 27 O 1.34085 * 106.60975 * 0.40756 * 26 25 24 28 28 N 1.20910 * 111.74832 * 359.72044 * 27 26 25 29 29 H 1.09001 * 109.46742 * 299.99765 * 1 2 3 30 30 H 1.09004 * 109.47070 * 59.99819 * 1 2 3 31 31 H 1.08998 * 109.47250 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47874 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47203 * 300.00644 * 3 2 1 34 34 H 1.09004 * 109.47338 * 60.00074 * 3 2 1 35 35 H 1.08998 * 109.47141 * 300.00135 * 4 2 1 36 36 H 1.08998 * 109.46610 * 60.00036 * 4 2 1 37 37 H 1.08996 * 109.47308 * 180.02562 * 4 2 1 38 38 H 0.96997 * 119.99651 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47069 * 184.99840 * 11 9 8 40 40 H 1.08991 * 109.47625 * 305.00159 * 11 9 8 41 41 H 1.09002 * 109.46824 * 299.99583 * 12 11 9 42 42 H 1.09001 * 109.47241 * 59.99481 * 12 11 9 43 43 H 0.96998 * 120.00041 * 179.97438 * 16 15 13 44 44 H 0.96998 * 120.00094 * 359.97438 * 23 21 9 45 45 H 1.07998 * 128.01923 * 0.02562 * 25 24 23 46 46 H 1.08003 * 126.69387 * 180.10914 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9508 -2.5095 0.5039 8 7 2.0672 -2.6656 2.4170 9 6 1.6731 -4.0667 2.5835 10 1 0.6640 -4.2087 2.1965 11 6 1.7061 -4.4328 4.0687 12 6 0.6459 -3.6225 4.8173 13 6 0.6779 -3.9835 6.2801 14 1 1.3841 -4.7171 6.6399 15 6 -0.1936 -3.3764 7.1592 16 7 -1.0525 -2.4819 6.7213 17 14 -0.1534 -3.8233 8.9725 18 1 0.7949 -2.9275 9.6822 19 1 -1.5115 -3.6649 9.5516 20 1 0.2885 -5.2328 9.1252 21 6 2.6303 -4.9511 1.8268 22 8 3.5508 -4.4594 1.2089 23 7 2.4629 -6.2884 1.8358 24 6 3.3493 -7.1070 1.1358 25 6 4.4674 -6.6905 0.3654 26 6 4.9934 -7.8472 -0.0979 27 8 4.2191 -8.8358 0.3722 28 7 3.3143 -8.4112 1.0527 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2491 38 1 2.6268 -2.2367 3.0832 39 1 1.4996 -5.4967 4.1853 40 1 2.6911 -4.2070 4.4768 41 1 0.8524 -2.5585 4.7007 42 1 -0.3393 -3.8482 4.4091 43 1 -1.6659 -2.0550 7.3397 44 1 1.7265 -6.6816 2.3297 45 1 4.8181 -5.6839 0.1922 46 1 5.8641 -7.9535 -0.7280 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819458714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:26 Heat of formation + Delta-G solvation = -57.646540 kcal Electronic energy + Delta-G solvation = -30251.198053 eV Core-core repulsion = 25951.788526 eV Total energy + Delta-G solvation = -4299.409527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.92519 -40.83359 -39.98183 -37.36097 -35.62964 -35.40882 -34.04790 -33.14187 -32.59612 -31.58950 -30.97135 -27.78103 -27.40496 -27.32518 -24.52256 -23.63945 -22.78965 -21.83827 -21.05916 -20.29073 -19.88920 -18.39742 -18.04753 -17.63900 -17.38100 -16.85128 -16.38689 -16.18170 -15.76980 -15.26425 -15.02969 -14.52787 -14.44877 -14.32729 -14.07847 -13.76819 -13.43042 -13.25446 -13.02315 -12.49985 -12.36760 -12.18044 -12.12507 -11.86630 -11.83345 -11.67077 -11.51118 -11.43807 -11.24784 -11.08428 -10.98868 -10.75103 -10.35909 -10.23825 -10.17189 -9.86603 -9.80656 -9.67376 -9.28010 -8.92915 -8.87739 -8.46686 -6.11529 -4.15783 1.36775 1.95690 2.16887 2.59570 2.83585 3.13359 3.25546 3.26524 3.32939 3.35180 4.24268 4.29865 4.36589 4.59747 4.74514 4.79165 4.93088 4.96244 5.11000 5.12436 5.24863 5.34473 5.40429 5.45085 5.54088 5.64526 5.68113 5.77805 5.84141 5.89874 5.93625 5.98374 6.24214 6.28485 6.33017 6.35038 6.50531 6.66632 6.69045 7.04902 7.49052 7.55858 7.62928 7.84731 7.91739 8.23264 8.24248 8.59872 8.90364 9.49715 10.99158 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005877 B = 0.004560 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4763.503646 B = 6139.283221 C =10442.093739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.361 6.361 6 C 0.662 3.338 7 O -0.573 6.573 8 N -0.678 5.678 9 C 0.157 3.843 10 H 0.123 0.877 11 C -0.118 4.118 12 C 0.025 3.975 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.516 3.484 22 O -0.510 6.510 23 N -0.631 5.631 24 C 0.251 3.749 25 C -0.226 4.226 26 C -0.056 4.056 27 O 0.094 5.906 28 N -0.392 5.392 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.414 0.586 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.024 0.976 42 H 0.021 0.979 43 H 0.262 0.738 44 H 0.423 0.577 45 H 0.189 0.811 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.277 -0.581 -15.482 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.276 6.276 6 C 0.416 3.584 7 O -0.463 6.463 8 N -0.336 5.336 9 C 0.048 3.952 10 H 0.141 0.859 11 C -0.156 4.156 12 C -0.012 4.012 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.302 3.698 22 O -0.382 6.382 23 N -0.283 5.283 24 C 0.001 3.999 25 C -0.249 4.249 26 C -0.137 4.137 27 O 0.034 5.966 28 N -0.108 5.108 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.250 0.750 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.261 0.739 45 H 0.206 0.794 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 8.645 -1.158 -15.840 18.082 hybrid contribution 0.226 0.583 1.273 1.418 sum 8.870 -0.575 -14.567 17.065 Atomic orbital electron populations 1.22524 0.93956 1.05262 1.02405 1.22023 0.94430 0.91399 0.82165 1.21851 1.02127 0.92733 1.03038 1.22498 1.01469 1.03550 0.96356 1.86301 1.71389 1.23648 1.46236 1.17926 0.78326 0.80361 0.81833 1.90863 1.41502 1.70619 1.43297 1.44193 1.55392 1.10419 1.23564 1.21024 0.97345 0.78465 0.98363 0.85899 1.22108 1.03362 1.02070 0.88051 1.19120 0.92481 0.95210 0.94417 1.21144 1.19013 1.23791 0.92639 0.92508 1.24994 0.95293 0.94938 0.98917 1.69956 1.20986 1.26859 1.35086 0.86592 0.77347 0.78890 0.85172 1.20624 1.21190 1.19829 1.21832 0.86432 0.81070 0.80443 1.90606 1.32049 1.73749 1.41803 1.42677 1.29731 1.05794 1.50145 1.20709 0.93621 0.88317 0.97243 1.23056 0.97096 1.02026 1.02727 1.25947 0.99296 0.86639 1.01860 1.84807 1.29461 1.33483 1.48849 1.74064 1.10168 1.10369 1.16226 0.91877 0.91443 0.89255 0.91582 0.90360 0.91325 0.89366 0.91460 0.92294 0.74958 0.90592 0.91386 0.95719 0.96039 0.92832 0.73940 0.79423 0.76516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.37 37.16 0.31 -2.09 16 2 C 0.14 1.79 1.13 -90.62 -0.10 1.68 16 3 C -0.14 -1.40 8.85 37.15 0.33 -1.07 16 4 C -0.18 -2.27 8.37 37.16 0.31 -1.96 16 5 O -0.36 -5.74 9.94 -40.31 -0.40 -6.14 16 6 C 0.66 11.48 7.89 54.06 0.43 11.91 16 7 O -0.57 -10.69 11.54 -19.29 -0.22 -10.91 16 8 N -0.68 -11.12 4.06 -59.86 -0.24 -11.37 16 9 C 0.16 2.48 2.38 -69.08 -0.16 2.32 16 10 H 0.12 1.99 7.58 -51.93 -0.39 1.60 16 11 C -0.12 -2.01 4.64 -26.73 -0.12 -2.13 16 12 C 0.02 0.56 4.86 -27.88 -0.14 0.43 16 13 C -0.53 -13.65 9.11 -34.44 -0.31 -13.96 16 14 H 0.06 1.42 7.74 -52.48 -0.41 1.02 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 17 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.52 8.02 7.15 -10.98 -0.08 7.94 16 22 O -0.51 -8.82 13.60 5.56 0.08 -8.75 16 23 N -0.63 -8.80 5.29 -11.43 -0.06 -8.86 16 24 C 0.25 3.60 8.18 -154.82 -1.27 2.34 16 25 C -0.23 -2.87 9.86 -39.20 -0.39 -3.26 16 26 C -0.06 -0.53 12.28 29.67 0.36 -0.16 16 27 O 0.09 1.12 11.19 17.06 0.19 1.31 16 28 N -0.39 -5.55 12.10 31.19 0.38 -5.17 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.39 5.88 -51.93 -0.31 1.08 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.41 6.38 8.71 -40.82 -0.36 6.02 16 39 H 0.08 1.18 7.43 -51.93 -0.39 0.80 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.02 0.59 7.75 -51.93 -0.40 0.19 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.42 5.10 8.18 -40.82 -0.33 4.76 16 45 H 0.19 2.51 6.22 -52.49 -0.33 2.19 16 46 H 0.22 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -32.68 385.41 -6.26 -38.94 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.58 Total: 10.63 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.93 Total: 3.53 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.81 Total: -50.05 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.36 Total: -24.49 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.68 -6.26 -38.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819458714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.708 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds