Wall clock time and date at job start Tue Mar 31 2020 22:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47584 * 2 1 4 4 C 1.53007 * 109.47066 * 240.00032 * 2 1 3 5 5 O 1.45204 * 109.47156 * 120.00288 * 2 1 3 6 6 C 1.34635 * 116.99932 * 59.99939 * 5 2 1 7 7 O 1.21517 * 119.99965 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00087 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00075 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47092 * 324.99806 * 9 8 6 11 11 C 1.53000 * 109.47023 * 204.99547 * 9 8 6 12 12 C 1.53006 * 109.46846 * 65.00406 * 11 9 8 13 13 C 1.50701 * 109.47024 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99939 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99968 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99808 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47109 * 90.00453 * 17 15 13 19 19 H 1.48498 * 109.47260 * 209.99830 * 17 15 13 20 20 H 1.48494 * 109.47293 * 330.00082 * 17 15 13 21 21 C 1.50703 * 109.47155 * 84.99845 * 9 8 6 22 22 O 1.21278 * 119.99818 * 359.97438 * 21 9 8 23 23 N 1.34777 * 119.99991 * 180.02562 * 21 9 8 24 24 C 1.39496 * 119.99757 * 180.02562 * 23 21 9 25 25 C 1.42027 * 126.89718 * 359.70836 * 24 23 21 26 26 C 1.35247 * 103.95646 * 179.85254 * 25 24 23 27 27 O 1.34085 * 106.60975 * 0.40756 * 26 25 24 28 28 N 1.20910 * 111.74832 * 359.72044 * 27 26 25 29 29 H 1.09001 * 109.46742 * 299.99765 * 1 2 3 30 30 H 1.09004 * 109.47070 * 59.99819 * 1 2 3 31 31 H 1.08998 * 109.47250 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47874 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47203 * 300.00644 * 3 2 1 34 34 H 1.09004 * 109.47338 * 60.00074 * 3 2 1 35 35 H 1.08998 * 109.47141 * 300.00135 * 4 2 1 36 36 H 1.08998 * 109.46610 * 60.00036 * 4 2 1 37 37 H 1.08996 * 109.47308 * 180.02562 * 4 2 1 38 38 H 0.96997 * 119.99651 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47069 * 184.99840 * 11 9 8 40 40 H 1.08991 * 109.47625 * 305.00159 * 11 9 8 41 41 H 1.09002 * 109.46824 * 299.99583 * 12 11 9 42 42 H 1.09001 * 109.47241 * 59.99481 * 12 11 9 43 43 H 0.96998 * 120.00041 * 179.97438 * 16 15 13 44 44 H 0.96998 * 120.00094 * 359.97438 * 23 21 9 45 45 H 1.07998 * 128.01923 * 0.02562 * 25 24 23 46 46 H 1.08003 * 126.69387 * 180.10914 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9508 -2.5095 0.5039 8 7 2.0672 -2.6656 2.4170 9 6 1.6731 -4.0667 2.5835 10 1 0.6640 -4.2087 2.1965 11 6 1.7061 -4.4328 4.0687 12 6 0.6459 -3.6225 4.8173 13 6 0.6779 -3.9835 6.2801 14 1 1.3841 -4.7171 6.6399 15 6 -0.1936 -3.3764 7.1592 16 7 -1.0525 -2.4819 6.7213 17 14 -0.1534 -3.8233 8.9725 18 1 0.7949 -2.9275 9.6822 19 1 -1.5115 -3.6649 9.5516 20 1 0.2885 -5.2328 9.1252 21 6 2.6303 -4.9511 1.8268 22 8 3.5508 -4.4594 1.2089 23 7 2.4629 -6.2884 1.8358 24 6 3.3493 -7.1070 1.1358 25 6 4.4674 -6.6905 0.3654 26 6 4.9934 -7.8472 -0.0979 27 8 4.2191 -8.8358 0.3722 28 7 3.3143 -8.4112 1.0527 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2491 38 1 2.6268 -2.2367 3.0832 39 1 1.4996 -5.4967 4.1853 40 1 2.6911 -4.2070 4.4768 41 1 0.8524 -2.5585 4.7007 42 1 -0.3393 -3.8482 4.4091 43 1 -1.6659 -2.0550 7.3397 44 1 1.7265 -6.6816 2.3297 45 1 4.8181 -5.6839 0.1922 46 1 5.8641 -7.9535 -0.7280 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819458714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:25 Heat of formation + Delta-G solvation = -79.251545 kcal Electronic energy + Delta-G solvation = -30252.134916 eV Core-core repulsion = 25951.788526 eV Total energy + Delta-G solvation = -4300.346391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.91237 -42.11080 -41.20236 -38.58758 -36.93406 -36.71358 -35.33261 -34.83980 -33.63098 -32.79489 -32.37525 -29.38877 -28.35215 -28.28305 -26.20391 -24.79994 -23.89137 -23.01872 -22.56233 -21.57533 -21.09562 -19.40548 -19.28640 -18.84889 -18.63372 -18.08721 -17.92623 -17.46776 -17.01300 -16.56815 -16.46019 -16.13587 -15.67374 -15.51321 -15.22910 -14.84390 -14.69601 -14.44107 -14.16987 -14.12507 -13.73589 -13.33869 -13.15136 -12.98275 -12.89986 -12.85553 -12.85301 -12.62796 -12.55149 -12.50885 -12.45527 -12.32695 -11.87596 -11.81992 -11.40658 -11.35950 -11.16762 -11.14187 -10.70281 -10.53530 -10.28122 -9.95446 -8.17515 -6.27658 0.42146 0.92140 0.97201 1.41797 1.43237 1.44371 1.54218 1.68645 1.84544 2.42672 2.45562 3.10163 3.17694 3.22332 3.48311 3.73930 3.76964 3.81337 3.93232 3.95887 3.98385 4.25130 4.46052 4.56892 4.62203 4.63071 4.72970 4.77299 4.77342 4.84430 4.88623 4.90688 5.00527 5.05311 5.17733 5.26886 5.30054 5.36223 5.52441 5.53645 5.67552 5.85135 5.94913 6.21896 6.31155 6.72190 6.89450 7.28018 7.30705 7.41983 8.93619 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005877 B = 0.004560 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4763.503646 B = 6139.283221 C =10442.093739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.175 4.175 5 O -0.369 6.369 6 C 0.656 3.344 7 O -0.591 6.591 8 N -0.680 5.680 9 C 0.165 3.835 10 H 0.117 0.883 11 C -0.100 4.100 12 C 0.030 3.970 13 C -0.539 4.539 14 H 0.065 0.935 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.957 3.043 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.262 1.262 21 C 0.523 3.477 22 O -0.528 6.528 23 N -0.624 5.624 24 C 0.226 3.774 25 C -0.258 4.258 26 C -0.016 4.016 27 O 0.097 5.903 28 N -0.411 5.411 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.417 0.583 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.004 0.996 42 H -0.003 1.003 43 H 0.262 0.738 44 H 0.430 0.570 45 H 0.179 0.821 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.974 -1.143 -16.190 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.232 4.232 5 O -0.283 6.283 6 C 0.410 3.590 7 O -0.482 6.482 8 N -0.338 5.338 9 C 0.056 3.944 10 H 0.135 0.865 11 C -0.138 4.138 12 C -0.007 4.007 13 C -0.577 4.577 14 H 0.084 0.916 15 C -0.194 4.194 16 N -0.570 5.570 17 Si 0.783 3.217 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.187 1.187 21 C 0.308 3.692 22 O -0.401 6.401 23 N -0.277 5.277 24 C -0.023 4.023 25 C -0.281 4.281 26 C -0.097 4.097 27 O 0.037 5.963 28 N -0.127 5.127 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.022 0.978 42 H 0.015 0.985 43 H 0.070 0.930 44 H 0.269 0.731 45 H 0.196 0.804 46 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 10.345 -1.744 -16.537 19.584 hybrid contribution -0.264 0.736 1.386 1.592 sum 10.081 -1.008 -15.151 18.226 Atomic orbital electron populations 1.22486 0.94170 1.03607 1.03540 1.22488 0.94543 0.92928 0.81469 1.21886 1.02472 0.90402 1.04378 1.22431 1.01494 1.01989 0.97303 1.86316 1.71459 1.22821 1.47753 1.18093 0.78195 0.80893 0.81771 1.90854 1.42256 1.71144 1.43911 1.44243 1.55318 1.10646 1.23560 1.20832 0.97362 0.78608 0.97587 0.86547 1.21846 1.01697 1.02134 0.88128 1.18952 0.92976 0.94850 0.93899 1.21637 1.18563 1.23346 0.94115 0.91634 1.25853 0.95128 0.94979 1.03395 1.70090 1.22067 1.28324 1.36534 0.85564 0.77170 0.79082 0.79930 1.20110 1.21352 1.18653 1.21514 0.85890 0.81489 0.80260 1.90601 1.32659 1.74229 1.42637 1.42491 1.29938 1.05288 1.49966 1.21010 0.94411 0.88713 0.98152 1.23100 0.97752 1.02865 1.04384 1.26803 0.98780 0.84591 0.99549 1.84774 1.29247 1.33953 1.48326 1.74075 1.11243 1.10211 1.17132 0.92525 0.88490 0.92216 0.91067 0.87434 0.91539 0.92424 0.88594 0.92108 0.74567 0.88718 0.90567 0.97763 0.98507 0.92963 0.73146 0.80371 0.71207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.70 8.37 71.98 0.60 -4.09 16 2 C 0.12 3.12 1.13 -10.79 -0.01 3.11 16 3 C -0.13 -2.43 8.85 71.98 0.64 -1.79 16 4 C -0.18 -4.25 8.37 71.98 0.60 -3.65 16 5 O -0.37 -11.96 9.94 -55.45 -0.55 -12.51 16 6 C 0.66 23.62 7.89 129.79 1.02 24.64 16 7 O -0.59 -22.99 11.54 19.79 0.23 -22.76 16 8 N -0.68 -23.07 4.06 -573.71 -2.33 -25.40 16 9 C 0.16 5.35 2.38 44.25 0.11 5.46 16 10 H 0.12 3.95 7.58 -2.39 -0.02 3.94 16 11 C -0.10 -3.43 4.64 30.60 0.14 -3.28 16 12 C 0.03 1.42 4.86 29.85 0.15 1.56 16 13 C -0.54 -27.95 9.11 25.60 0.23 -27.71 16 14 H 0.07 3.22 7.74 -2.91 -0.02 3.19 16 15 C 0.00 0.25 5.46 84.65 0.46 0.72 16 16 N -0.93 -54.21 13.29 21.45 0.28 -53.93 16 17 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 C 0.52 16.40 7.15 87.66 0.63 17.03 16 22 O -0.53 -18.45 13.60 -3.02 -0.04 -18.49 16 23 N -0.62 -17.38 5.29 -309.51 -1.64 -19.02 16 24 C 0.23 6.35 8.18 134.11 1.10 7.45 16 25 C -0.26 -6.24 9.86 22.52 0.22 -6.02 16 26 C -0.02 -0.26 12.28 67.13 0.82 0.57 16 27 O 0.10 2.09 11.19 71.22 0.80 2.89 16 28 N -0.41 -11.18 12.10 -56.31 -0.68 -11.86 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.92 5.88 -2.39 -0.01 1.91 16 32 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.06 1.78 5.88 -2.39 -0.01 1.77 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.42 13.29 8.71 -92.71 -0.81 12.49 16 39 H 0.09 2.89 7.43 -2.39 -0.02 2.87 16 40 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.00 0.20 7.75 -2.39 -0.02 0.18 16 42 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 44 H 0.43 10.32 8.18 -92.71 -0.76 9.56 16 45 H 0.18 4.71 6.22 -2.91 -0.02 4.69 16 46 H 0.27 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -72.75 385.41 4.27 -68.48 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.54 Total: 34.24 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 6.71 Total: 13.99 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -4.36 Total: -110.21 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: 0.43 Total: -50.88 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -72.75 4.27 -68.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819458714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.769 kcal (2) G-P(sol) polarization free energy of solvation -72.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds