Wall clock time and date at job start Wed Apr 1 2020 00:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47165 * 300.00039 * 3 2 1 6 6 O 1.21301 * 119.99602 * 144.99542 * 5 3 2 7 7 N 1.34774 * 119.99836 * 325.00298 * 5 3 2 8 8 C 1.40599 * 119.99659 * 180.02562 * 7 5 3 9 9 C 1.40650 * 126.08181 * 0.02562 * 8 7 5 10 10 N 1.30910 * 108.38505 * 180.02562 * 9 8 7 11 11 N 1.40062 * 108.40802 * 0.02562 * 10 9 8 12 12 C 1.37332 * 126.06992 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99827 * 179.97438 * 12 11 10 14 14 C 1.38979 * 119.99538 * 359.97438 * 12 11 10 15 15 N 1.31293 * 120.00793 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99526 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47494 * 89.99562 * 16 14 12 18 18 H 1.48505 * 109.46932 * 209.99679 * 16 14 12 19 19 H 1.48500 * 109.47014 * 329.99249 * 16 14 12 20 20 C 1.35677 * 126.07974 * 179.71590 * 8 7 5 21 21 C 1.50700 * 109.46943 * 60.00124 * 3 2 1 22 22 O 1.20822 * 120.00083 * 214.99675 * 21 3 2 23 23 O 1.34231 * 120.00327 * 34.99683 * 21 3 2 24 24 C 1.45198 * 117.00232 * 179.97438 * 23 21 3 25 25 C 1.52998 * 109.46813 * 60.00579 * 24 23 21 26 26 C 1.53003 * 109.46978 * 180.02562 * 24 23 21 27 27 C 1.52997 * 109.47065 * 300.00241 * 24 23 21 28 28 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47090 * 59.99900 * 4 3 2 32 32 H 1.08996 * 109.47307 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47184 * 300.00269 * 4 3 2 34 34 H 0.97002 * 120.00481 * 359.97438 * 7 5 3 35 35 H 1.08003 * 125.80978 * 359.96890 * 9 8 7 36 36 H 0.96991 * 120.00503 * 180.02562 * 15 14 12 37 37 H 1.07999 * 126.24857 * 359.97438 * 20 8 7 38 38 H 1.08996 * 109.47203 * 59.99901 * 25 24 23 39 39 H 1.09005 * 109.47000 * 179.97438 * 25 24 23 40 40 H 1.09000 * 109.47014 * 299.99689 * 25 24 23 41 41 H 1.08998 * 109.47049 * 59.99815 * 26 24 23 42 42 H 1.08996 * 109.46987 * 180.02562 * 26 24 23 43 43 H 1.09008 * 109.46929 * 300.00196 * 26 24 23 44 44 H 1.09000 * 109.47183 * 60.00053 * 27 24 23 45 45 H 1.09005 * 109.46823 * 179.97438 * 27 24 23 46 46 H 1.08998 * 109.47365 * 299.99790 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 1.5657 2.0533 -1.2305 6 8 1.3710 3.2494 -1.1759 7 7 1.3842 1.3932 -2.3914 8 6 0.9699 2.0911 -3.5395 9 6 0.7096 3.4709 -3.6212 10 7 0.3472 3.7507 -4.8477 11 7 0.3611 2.5658 -5.5942 12 6 0.0420 2.4444 -6.9245 13 1 0.0867 1.4780 -7.4045 14 6 -0.3383 3.5653 -7.6528 15 7 -0.3932 4.7401 -7.0692 16 14 -0.7730 3.4001 -9.4620 17 1 -2.2258 3.1249 -9.5990 18 1 -0.4397 4.6631 -10.1685 19 1 0.0011 2.2811 -10.0569 20 6 0.7556 1.5543 -4.7670 21 6 1.5657 2.0533 1.2305 22 8 1.3718 3.2446 1.1763 23 8 1.3849 1.3959 2.3868 24 6 0.9565 2.1803 3.5311 25 6 -0.3871 2.8430 3.2207 26 6 0.8055 1.2658 4.7485 27 6 2.0002 3.2583 3.8299 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8575 0.6435 -0.8891 32 1 3.9789 2.1803 0.0011 33 1 3.8568 0.6438 0.8908 34 1 1.5401 0.4368 -2.4351 35 1 0.7935 4.1789 -2.8100 36 1 -0.6590 5.5222 -7.5774 37 1 0.8726 0.5157 -5.0390 38 1 -1.1306 2.0750 3.0079 39 1 -0.7090 3.4316 4.0800 40 1 -0.2791 3.4945 2.3536 41 1 1.7629 0.7939 4.9693 42 1 0.4835 1.8546 5.6073 43 1 0.0622 0.4974 4.5357 44 1 2.1081 3.9098 2.9627 45 1 1.6783 3.8475 4.6887 46 1 2.9573 2.7861 4.0510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824757521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:10 Heat of formation + Delta-G solvation = -68.745157 kcal Electronic energy + Delta-G solvation = -30930.862602 eV Core-core repulsion = 26630.971802 eV Total energy + Delta-G solvation = -4299.890799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41827 -39.98688 -39.07853 -37.45001 -36.88132 -34.21536 -34.13209 -33.13172 -32.14907 -30.23793 -27.84546 -27.62210 -27.58017 -26.61949 -25.59993 -24.89107 -23.03511 -21.05741 -20.44270 -19.47054 -19.40923 -18.16895 -17.36718 -17.17569 -16.51700 -16.39366 -15.48425 -15.47024 -15.26533 -15.01883 -14.69850 -14.47522 -14.12949 -13.85119 -13.77520 -13.53339 -13.08631 -12.91452 -12.78141 -12.77277 -12.59920 -12.38621 -12.28209 -12.10286 -12.08231 -11.87061 -11.68604 -11.56176 -11.43351 -11.26839 -11.24988 -10.95919 -10.64963 -10.54176 -10.45607 -10.16111 -9.92066 -9.17729 -8.96610 -8.80374 -8.07410 -6.72696 -6.56544 -4.24121 2.06986 2.25620 2.68407 2.99129 3.04601 3.09799 3.35085 3.55967 3.65909 3.85167 4.30422 4.38952 4.51159 4.54571 4.61970 4.70416 4.77040 5.01416 5.04977 5.21831 5.25641 5.29846 5.32866 5.36716 5.42613 5.47383 5.49489 5.59117 5.64335 5.66803 5.77432 5.84308 6.07697 6.13324 6.22823 6.39325 6.41879 6.56799 6.86699 6.93642 7.09256 7.21718 7.79193 7.84485 8.11176 8.24814 8.58067 8.77809 9.36288 9.65475 10.39365 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026159 B = 0.002555 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.119090 B =10955.405461 C =11289.146033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.353 6.353 3 C 0.118 3.882 4 C -0.137 4.137 5 C 0.478 3.522 6 O -0.492 6.492 7 N -0.610 5.610 8 C -0.062 4.062 9 C -0.032 4.032 10 N -0.260 5.260 11 N -0.141 5.141 12 C -0.323 4.323 13 H 0.117 0.883 14 C 0.046 3.954 15 N -0.769 5.769 16 Si 0.935 3.065 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.081 4.081 21 C 0.445 3.555 22 O -0.449 6.449 23 O -0.342 6.342 24 C 0.114 3.886 25 C -0.185 4.185 26 C -0.138 4.138 27 C -0.184 4.184 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.402 0.598 35 H 0.176 0.824 36 H 0.275 0.725 37 H 0.147 0.853 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 -10.263 18.449 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.271 6.271 3 C 0.073 3.927 4 C -0.194 4.194 5 C 0.260 3.740 6 O -0.365 6.365 7 N -0.254 5.254 8 C -0.167 4.167 9 C -0.207 4.207 10 N -0.091 5.091 11 N 0.091 4.909 12 C -0.455 4.455 13 H 0.134 0.866 14 C -0.171 4.171 15 N -0.396 5.396 16 Si 0.759 3.241 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.188 1.188 20 C -0.232 4.232 21 C 0.283 3.717 22 O -0.332 6.332 23 O -0.260 6.260 24 C 0.078 3.922 25 C -0.242 4.242 26 C -0.195 4.195 27 C -0.241 4.241 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.236 0.764 35 H 0.192 0.808 36 H 0.086 0.914 37 H 0.164 0.836 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.014 -7.991 17.656 19.613 hybrid contribution -0.118 -1.035 -0.122 1.049 sum 2.896 -9.026 17.533 19.931 Atomic orbital electron populations 1.23083 0.79806 1.03981 1.01359 1.88009 1.20868 1.23786 1.94484 1.21661 0.98030 0.83592 0.89443 1.21791 0.87824 1.04537 1.05237 1.20024 0.81465 0.88237 0.84255 1.90745 1.48665 1.13637 1.83493 1.42391 1.64777 1.10865 1.07399 1.17242 1.20469 0.92750 0.86230 1.24125 1.06266 0.93684 0.96655 1.78272 1.25044 1.04144 1.01597 1.44568 1.35691 1.03548 1.07064 1.19878 1.47291 0.97006 0.81318 0.86572 1.25647 0.95839 0.94596 1.01050 1.70212 1.34078 0.98817 1.36446 0.85826 0.79269 0.78662 0.80386 1.19590 1.20081 1.18786 1.21250 1.16740 0.94684 0.90564 1.23593 0.75858 0.87392 0.84851 1.90720 1.42987 1.15291 1.84185 1.86613 1.78614 1.42571 1.18236 1.22211 0.94724 0.91354 0.83940 1.22509 0.95492 1.01869 1.04368 1.21830 1.03140 0.99587 0.94958 1.22494 0.98415 0.99163 1.04003 0.93468 0.92505 0.88165 0.89271 0.89505 0.89738 0.76428 0.80767 0.91429 0.83595 0.92071 0.91010 0.89570 0.91464 0.90444 0.91505 0.89664 0.91077 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.28 101.05 1.04 1.20 16 2 O -0.35 -4.46 9.49 -49.12 -0.47 -4.93 16 3 C 0.12 1.68 1.02 -92.93 -0.09 1.59 16 4 C -0.14 -1.55 8.81 37.16 0.33 -1.22 16 5 C 0.48 8.75 5.52 -10.99 -0.06 8.69 16 6 O -0.49 -11.05 11.82 -18.11 -0.21 -11.26 16 7 N -0.61 -11.04 4.60 -10.00 -0.05 -11.09 16 8 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 9 C -0.03 -0.85 10.85 -17.03 -0.18 -1.03 16 10 N -0.26 -7.59 10.40 30.80 0.32 -7.27 16 11 N -0.14 -3.87 3.74 -11.41 -0.04 -3.91 16 12 C -0.32 -8.50 10.25 -14.81 -0.15 -8.66 16 13 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 14 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 15 N -0.77 -21.55 11.81 55.49 0.66 -20.90 16 16 Si 0.93 18.89 29.55 -169.99 -5.02 13.87 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 20 C -0.08 -1.90 11.49 -16.39 -0.19 -2.09 16 21 C 0.44 6.68 4.92 36.01 0.18 6.86 16 22 O -0.45 -8.01 10.16 -26.58 -0.27 -8.28 16 23 O -0.34 -4.38 8.97 -44.43 -0.40 -4.78 16 24 C 0.11 1.21 1.13 -90.62 -0.10 1.11 16 25 C -0.19 -2.05 8.37 37.16 0.31 -1.74 16 26 C -0.14 -1.05 8.85 37.16 0.33 -0.72 16 27 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 28 H 0.05 0.57 6.69 -51.93 -0.35 0.22 16 29 H 0.06 0.78 6.62 -51.93 -0.34 0.44 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.40 5.89 8.26 -40.82 -0.34 5.56 16 35 H 0.18 4.67 5.92 -52.48 -0.31 4.36 16 36 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.15 2.83 8.06 -52.49 -0.42 2.41 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.23 5.89 -51.93 -0.31 0.92 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.08 1.11 5.89 -51.93 -0.31 0.81 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -34.26 377.15 -5.34 -39.59 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.57 Total: 11.76 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 1.04 Total: 1.50 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.89 Total: -43.16 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.35 Total: -29.24 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.26 -5.34 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824757521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.150 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds