Wall clock time and date at job start Wed Apr 1 2020 00:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47165 * 300.00039 * 3 2 1 6 6 O 1.21301 * 119.99602 * 144.99542 * 5 3 2 7 7 N 1.34774 * 119.99836 * 325.00298 * 5 3 2 8 8 C 1.40599 * 119.99659 * 180.02562 * 7 5 3 9 9 C 1.40650 * 126.08181 * 0.02562 * 8 7 5 10 10 N 1.30910 * 108.38505 * 180.02562 * 9 8 7 11 11 N 1.40062 * 108.40802 * 0.02562 * 10 9 8 12 12 C 1.37332 * 126.06992 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99827 * 179.97438 * 12 11 10 14 14 C 1.38979 * 119.99538 * 359.97438 * 12 11 10 15 15 N 1.31293 * 120.00793 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99526 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47494 * 89.99562 * 16 14 12 18 18 H 1.48505 * 109.46932 * 209.99679 * 16 14 12 19 19 H 1.48500 * 109.47014 * 329.99249 * 16 14 12 20 20 C 1.35677 * 126.07974 * 179.71590 * 8 7 5 21 21 C 1.50700 * 109.46943 * 60.00124 * 3 2 1 22 22 O 1.20822 * 120.00083 * 214.99675 * 21 3 2 23 23 O 1.34231 * 120.00327 * 34.99683 * 21 3 2 24 24 C 1.45198 * 117.00232 * 179.97438 * 23 21 3 25 25 C 1.52998 * 109.46813 * 60.00579 * 24 23 21 26 26 C 1.53003 * 109.46978 * 180.02562 * 24 23 21 27 27 C 1.52997 * 109.47065 * 300.00241 * 24 23 21 28 28 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47090 * 59.99900 * 4 3 2 32 32 H 1.08996 * 109.47307 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47184 * 300.00269 * 4 3 2 34 34 H 0.97002 * 120.00481 * 359.97438 * 7 5 3 35 35 H 1.08003 * 125.80978 * 359.96890 * 9 8 7 36 36 H 0.96991 * 120.00503 * 180.02562 * 15 14 12 37 37 H 1.07999 * 126.24857 * 359.97438 * 20 8 7 38 38 H 1.08996 * 109.47203 * 59.99901 * 25 24 23 39 39 H 1.09005 * 109.47000 * 179.97438 * 25 24 23 40 40 H 1.09000 * 109.47014 * 299.99689 * 25 24 23 41 41 H 1.08998 * 109.47049 * 59.99815 * 26 24 23 42 42 H 1.08996 * 109.46987 * 180.02562 * 26 24 23 43 43 H 1.09008 * 109.46929 * 300.00196 * 26 24 23 44 44 H 1.09000 * 109.47183 * 60.00053 * 27 24 23 45 45 H 1.09005 * 109.46823 * 179.97438 * 27 24 23 46 46 H 1.08998 * 109.47365 * 299.99790 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 1.5657 2.0533 -1.2305 6 8 1.3710 3.2494 -1.1759 7 7 1.3842 1.3932 -2.3914 8 6 0.9699 2.0911 -3.5395 9 6 0.7096 3.4709 -3.6212 10 7 0.3472 3.7507 -4.8477 11 7 0.3611 2.5658 -5.5942 12 6 0.0420 2.4444 -6.9245 13 1 0.0867 1.4780 -7.4045 14 6 -0.3383 3.5653 -7.6528 15 7 -0.3932 4.7401 -7.0692 16 14 -0.7730 3.4001 -9.4620 17 1 -2.2258 3.1249 -9.5990 18 1 -0.4397 4.6631 -10.1685 19 1 0.0011 2.2811 -10.0569 20 6 0.7556 1.5543 -4.7670 21 6 1.5657 2.0533 1.2305 22 8 1.3718 3.2446 1.1763 23 8 1.3849 1.3959 2.3868 24 6 0.9565 2.1803 3.5311 25 6 -0.3871 2.8430 3.2207 26 6 0.8055 1.2658 4.7485 27 6 2.0002 3.2583 3.8299 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8575 0.6435 -0.8891 32 1 3.9789 2.1803 0.0011 33 1 3.8568 0.6438 0.8908 34 1 1.5401 0.4368 -2.4351 35 1 0.7935 4.1789 -2.8100 36 1 -0.6590 5.5222 -7.5774 37 1 0.8726 0.5157 -5.0390 38 1 -1.1306 2.0750 3.0079 39 1 -0.7090 3.4316 4.0800 40 1 -0.2791 3.4945 2.3536 41 1 1.7629 0.7939 4.9693 42 1 0.4835 1.8546 5.6073 43 1 0.0622 0.4974 4.5357 44 1 2.1081 3.9098 2.9627 45 1 1.6783 3.8475 4.6887 46 1 2.9573 2.7861 4.0510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824757521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:09 Heat of formation + Delta-G solvation = -91.419394 kcal Electronic energy + Delta-G solvation = -30931.845830 eV Core-core repulsion = 26630.971802 eV Total energy + Delta-G solvation = -4300.874028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.63218 -41.64575 -40.58817 -38.74060 -38.02465 -35.96491 -35.06247 -34.94923 -33.24205 -32.23525 -29.69962 -28.44525 -28.30526 -27.62113 -27.05088 -26.41840 -24.37705 -22.89395 -21.85265 -21.20730 -20.59137 -19.57021 -18.86572 -18.61219 -17.54820 -17.49110 -17.41159 -16.82450 -16.54111 -16.21619 -16.17925 -15.63595 -15.48952 -15.27120 -15.06972 -14.85308 -14.65062 -14.54238 -13.80670 -13.65964 -13.51556 -13.42149 -13.32977 -13.30103 -13.13584 -12.97226 -12.91278 -12.89556 -12.88043 -12.76943 -12.50601 -12.18432 -12.08873 -11.91450 -11.68633 -11.40641 -11.12946 -11.03496 -10.84339 -10.37333 -10.12658 -8.58290 -8.47928 -6.25999 0.86487 1.08736 1.19870 1.39989 1.42223 1.58102 1.81320 2.05238 2.22408 2.34419 2.46303 2.82259 3.08456 3.25363 3.57818 3.69201 3.71835 3.76754 3.92242 4.26608 4.30473 4.41407 4.46979 4.52200 4.54770 4.56024 4.59037 4.71338 4.71991 4.80057 4.83145 4.87022 4.96619 4.98355 5.01409 5.10481 5.21795 5.25963 5.26534 5.36040 5.43310 5.52350 5.94100 6.26533 6.58000 6.67762 6.71178 7.21036 7.44333 7.64843 8.51405 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026159 B = 0.002555 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.119090 B =10955.405461 C =11289.146033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.339 6.339 3 C 0.126 3.874 4 C -0.137 4.137 5 C 0.478 3.522 6 O -0.536 6.536 7 N -0.599 5.599 8 C -0.045 4.045 9 C -0.059 4.059 10 N -0.309 5.309 11 N -0.165 5.165 12 C -0.352 4.352 13 H 0.144 0.856 14 C -0.008 4.008 15 N -0.825 5.825 16 Si 1.020 2.980 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.242 1.242 20 C -0.075 4.075 21 C 0.446 3.554 22 O -0.484 6.484 23 O -0.337 6.337 24 C 0.103 3.897 25 C -0.184 4.184 26 C -0.132 4.132 27 C -0.181 4.181 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.422 0.578 35 H 0.161 0.839 36 H 0.276 0.724 37 H 0.192 0.808 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.020 -13.809 19.279 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.257 6.257 3 C 0.081 3.919 4 C -0.194 4.194 5 C 0.262 3.738 6 O -0.413 6.413 7 N -0.245 5.245 8 C -0.151 4.151 9 C -0.234 4.234 10 N -0.141 5.141 11 N 0.066 4.934 12 C -0.483 4.483 13 H 0.161 0.839 14 C -0.219 4.219 15 N -0.453 5.453 16 Si 0.839 3.161 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.165 1.165 20 C -0.225 4.225 21 C 0.286 3.714 22 O -0.369 6.369 23 O -0.254 6.254 24 C 0.068 3.932 25 C -0.241 4.241 26 C -0.188 4.188 27 C -0.238 4.238 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.155 0.845 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.130 0.870 34 H 0.260 0.740 35 H 0.178 0.822 36 H 0.086 0.914 37 H 0.209 0.791 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.504 -11.616 18.531 22.150 hybrid contribution -0.271 0.021 -0.179 0.326 sum 3.233 -11.595 18.352 21.948 Atomic orbital electron populations 1.23235 0.79293 1.05948 1.00060 1.88048 1.21288 1.22180 1.94192 1.21522 0.99846 0.83578 0.86990 1.21911 0.85210 1.04786 1.07471 1.20843 0.79753 0.87950 0.85243 1.90739 1.50111 1.16036 1.84369 1.42280 1.64530 1.11614 1.06098 1.17269 1.18493 0.91557 0.87773 1.24094 1.07779 0.95532 0.96020 1.78174 1.26824 1.06349 1.02799 1.44867 1.36884 1.03758 1.07879 1.20659 1.47703 0.98550 0.81379 0.83886 1.26911 0.94865 0.93753 1.06392 1.70401 1.36056 1.00026 1.38823 0.84582 0.79228 0.78990 0.73340 1.18898 1.20343 1.16509 1.21992 1.14689 0.95959 0.89879 1.23704 0.75118 0.86929 0.85656 1.90738 1.44465 1.16888 1.84826 1.86601 1.78153 1.42568 1.18088 1.22596 0.94258 0.92228 0.84160 1.22486 0.96232 1.01645 1.03717 1.21853 1.03909 0.99336 0.93735 1.22468 0.99108 0.98892 1.03360 0.93927 0.94694 0.84528 0.87591 0.90374 0.86989 0.74035 0.82157 0.91407 0.79144 0.91683 0.88762 0.93366 0.90572 0.88212 0.91083 0.92979 0.88959 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 10.28 113.37 1.16 1.39 16 2 O -0.34 -7.74 9.49 -135.70 -1.29 -9.03 16 3 C 0.13 3.48 1.02 -12.29 -0.01 3.46 16 4 C -0.14 -2.84 8.81 71.98 0.63 -2.21 16 5 C 0.48 17.67 5.52 87.66 0.48 18.15 16 6 O -0.54 -25.35 11.82 19.52 0.23 -25.12 16 7 N -0.60 -21.28 4.60 -303.93 -1.40 -22.67 16 8 C -0.04 -2.09 6.90 37.73 0.26 -1.83 16 9 C -0.06 -3.31 10.85 85.42 0.93 -2.39 16 10 N -0.31 -18.96 10.40 -56.46 -0.59 -19.55 16 11 N -0.17 -9.18 3.74 -190.01 -0.71 -9.89 16 12 C -0.35 -18.55 10.25 84.01 0.86 -17.68 16 13 H 0.14 6.46 7.83 -2.91 -0.02 6.44 16 14 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 15 N -0.83 -48.11 11.81 21.66 0.26 -47.86 16 16 Si 1.02 38.56 29.55 68.60 2.03 40.58 16 17 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 19 H -0.24 -8.22 7.11 99.48 0.71 -7.52 16 20 C -0.07 -3.44 11.49 83.37 0.96 -2.48 16 21 C 0.45 13.39 4.92 71.24 0.35 13.74 16 22 O -0.48 -18.11 10.16 29.46 0.30 -17.81 16 23 O -0.34 -8.16 8.97 -46.49 -0.42 -8.58 16 24 C 0.10 2.05 1.13 -10.79 -0.01 2.04 16 25 C -0.18 -4.00 8.37 71.98 0.60 -3.40 16 26 C -0.13 -1.59 8.85 71.98 0.64 -0.95 16 27 C -0.18 -3.57 8.37 71.98 0.60 -2.97 16 28 H 0.04 0.98 6.69 -2.39 -0.02 0.96 16 29 H 0.03 0.93 6.62 -2.38 -0.02 0.91 16 30 H 0.14 1.98 8.14 -2.39 -0.02 1.97 16 31 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.42 11.43 8.26 -92.71 -0.77 10.67 16 35 H 0.16 9.30 5.92 -2.91 -0.02 9.28 16 36 H 0.28 14.83 8.31 -92.72 -0.77 14.06 16 37 H 0.19 6.79 8.06 -2.91 -0.02 6.76 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.05 1.44 5.89 -2.39 -0.01 1.43 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.05 1.40 5.89 -2.39 -0.01 1.39 16 45 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -80.81 377.15 6.58 -74.23 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: 0.25 Total: 40.75 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 7.92 Total: 4.95 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -2.44 Total: -99.98 kcal Atomic # 8 Polarization: -59.36 SS G_CDS: -1.18 Total: -60.54 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.58 kcal Total: -80.81 6.58 -74.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824757521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.193 kcal (2) G-P(sol) polarization free energy of solvation -80.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds