Wall clock time and date at job start Wed Apr 1 2020 00:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46943 * 60.00124 * 3 2 1 6 6 O 1.21300 * 120.00113 * 215.00130 * 5 3 2 7 7 N 1.34778 * 119.99908 * 34.99789 * 5 3 2 8 8 C 1.40595 * 119.99807 * 180.02562 * 7 5 3 9 9 C 1.40650 * 126.08522 * 359.68890 * 8 7 5 10 10 N 1.30909 * 108.39014 * 179.81956 * 9 8 7 11 11 N 1.40064 * 108.40514 * 0.44333 * 10 9 8 12 12 C 1.37315 * 126.06991 * 179.69940 * 11 10 9 13 13 H 1.08005 * 120.00312 * 180.02562 * 12 11 10 14 14 C 1.38986 * 120.00237 * 0.02562 * 12 11 10 15 15 N 1.31295 * 119.99616 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00352 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47115 * 60.00368 * 16 14 12 18 18 H 1.48503 * 109.47123 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47009 * 299.99920 * 16 14 12 20 20 C 1.35677 * 126.08275 * 180.02562 * 8 7 5 21 21 C 1.50700 * 109.47165 * 300.00039 * 3 2 1 22 22 O 1.20829 * 119.99752 * 145.00086 * 21 3 2 23 23 O 1.34229 * 120.00119 * 324.99999 * 21 3 2 24 24 C 1.45198 * 117.00048 * 180.02562 * 23 21 3 25 25 C 1.52999 * 109.47247 * 59.99906 * 24 23 21 26 26 C 1.52999 * 109.47297 * 180.02562 * 24 23 21 27 27 C 1.53004 * 109.46909 * 299.99794 * 24 23 21 28 28 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47090 * 59.99900 * 4 3 2 32 32 H 1.08996 * 109.47307 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47184 * 300.00269 * 4 3 2 34 34 H 0.96996 * 120.00091 * 0.02562 * 7 5 3 35 35 H 1.08008 * 125.80108 * 359.96726 * 9 8 7 36 36 H 0.97005 * 119.99712 * 180.02562 * 15 14 12 37 37 H 1.08006 * 126.24702 * 359.96867 * 20 8 7 38 38 H 1.09006 * 109.46951 * 59.99858 * 25 24 23 39 39 H 1.08992 * 109.47241 * 179.97438 * 25 24 23 40 40 H 1.09006 * 109.46734 * 300.00296 * 25 24 23 41 41 H 1.08999 * 109.47132 * 59.99650 * 26 24 23 42 42 H 1.08992 * 109.47313 * 180.02562 * 26 24 23 43 43 H 1.09006 * 109.46858 * 300.00116 * 26 24 23 44 44 H 1.08998 * 109.47189 * 60.00311 * 27 24 23 45 45 H 1.09001 * 109.46891 * 179.97438 * 27 24 23 46 46 H 1.08999 * 109.47175 * 300.00139 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 1.5657 2.0533 1.2305 6 8 1.3710 3.2493 1.1761 7 7 1.3842 1.3931 2.3914 8 6 0.9689 2.0907 3.5393 9 6 0.7128 3.4712 3.6223 10 7 0.3446 3.7500 4.8472 11 7 0.3607 2.5654 5.5943 12 6 0.0422 2.4440 6.9245 13 1 0.0886 1.4779 7.4050 14 6 -0.3399 3.5646 7.6527 15 7 -0.3968 4.7390 7.0684 16 14 -0.7724 3.3997 9.4624 17 1 0.4000 2.8717 10.2054 18 1 -1.1449 4.7307 10.0056 19 1 -1.9167 2.4655 9.6147 20 6 0.7498 1.5530 4.7655 21 6 1.5657 2.0533 -1.2305 22 8 1.3718 3.2447 -1.1761 23 8 1.3850 1.3960 -2.3867 24 6 0.9565 2.1804 -3.5310 25 6 2.0002 3.2585 -3.8298 26 6 0.8044 1.2659 -4.7481 27 6 -0.3871 2.8432 -3.2206 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8575 0.6435 -0.8891 32 1 3.9789 2.1803 0.0011 33 1 3.8568 0.6438 0.8908 34 1 1.5402 0.4368 2.4350 35 1 0.8023 4.1802 2.8125 36 1 -0.6631 5.5211 7.5767 37 1 0.8622 0.5135 5.0364 38 1 2.9574 2.7862 -4.0509 39 1 1.6788 3.8471 -4.6890 40 1 2.1081 3.9100 -2.9625 41 1 0.0607 0.4981 -4.5350 42 1 0.4832 1.8548 -5.6072 43 1 1.7614 0.7933 -4.9694 44 1 -0.2791 3.4947 -2.3535 45 1 -0.7085 3.4325 -4.0795 46 1 -1.1306 2.0752 -3.0077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824757522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:13 Heat of formation + Delta-G solvation = -68.682826 kcal Electronic energy + Delta-G solvation = -30930.894178 eV Core-core repulsion = 26631.006081 eV Total energy + Delta-G solvation = -4299.888096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41727 -39.98619 -39.07803 -37.44936 -36.88027 -34.21470 -34.13216 -33.13072 -32.14861 -30.23767 -27.84380 -27.62291 -27.57895 -26.61897 -25.59966 -24.88944 -23.03411 -21.05658 -20.44190 -19.47013 -19.40838 -18.16830 -17.36622 -17.17489 -16.51693 -16.39313 -15.48078 -15.46805 -15.26488 -15.01815 -14.69909 -14.47479 -14.12930 -13.85613 -13.77486 -13.53396 -13.08643 -12.90719 -12.78105 -12.77346 -12.59931 -12.38551 -12.28131 -12.10375 -12.08147 -11.86998 -11.68273 -11.56104 -11.43149 -11.25246 -11.24668 -10.96998 -10.65014 -10.56587 -10.45607 -10.15602 -9.92021 -9.17080 -8.96530 -8.80247 -8.07355 -6.72598 -6.56375 -4.23976 2.06974 2.25639 2.68634 3.00123 3.04457 3.08602 3.35119 3.56139 3.65943 3.85413 4.30421 4.39083 4.51173 4.54576 4.61991 4.70429 4.77113 5.01543 5.05046 5.21804 5.25649 5.29979 5.32921 5.36704 5.42698 5.47452 5.49453 5.59145 5.64315 5.66863 5.77463 5.84345 6.07682 6.13367 6.22896 6.39334 6.41905 6.56837 6.86707 6.93560 7.09367 7.21841 7.79212 7.84386 8.11267 8.24898 8.58136 8.77896 9.36391 9.65556 10.39443 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026157 B = 0.002555 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.190268 B =10955.058144 C =11288.724345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.353 6.353 3 C 0.118 3.882 4 C -0.137 4.137 5 C 0.478 3.522 6 O -0.492 6.492 7 N -0.610 5.610 8 C -0.062 4.062 9 C -0.032 4.032 10 N -0.260 5.260 11 N -0.141 5.141 12 C -0.323 4.323 13 H 0.116 0.884 14 C 0.046 3.954 15 N -0.769 5.769 16 Si 0.935 3.065 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.267 1.267 20 C -0.082 4.082 21 C 0.445 3.555 22 O -0.449 6.449 23 O -0.342 6.342 24 C 0.114 3.886 25 C -0.184 4.184 26 C -0.138 4.138 27 C -0.185 4.185 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.402 0.598 35 H 0.176 0.824 36 H 0.276 0.724 37 H 0.147 0.853 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -10.244 -18.435 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.271 6.271 3 C 0.073 3.927 4 C -0.194 4.194 5 C 0.260 3.740 6 O -0.365 6.365 7 N -0.254 5.254 8 C -0.167 4.167 9 C -0.207 4.207 10 N -0.091 5.091 11 N 0.092 4.908 12 C -0.455 4.455 13 H 0.134 0.866 14 C -0.171 4.171 15 N -0.396 5.396 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.192 1.192 20 C -0.233 4.233 21 C 0.283 3.717 22 O -0.332 6.332 23 O -0.260 6.260 24 C 0.078 3.922 25 C -0.241 4.241 26 C -0.195 4.195 27 C -0.242 4.242 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.236 0.764 35 H 0.192 0.808 36 H 0.086 0.914 37 H 0.164 0.836 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.008 -7.968 -17.644 19.593 hybrid contribution -0.111 -1.042 0.126 1.056 sum 2.897 -9.011 -17.519 19.912 Atomic orbital electron populations 1.23083 0.79805 1.03981 1.01360 1.88009 1.20868 1.23786 1.94484 1.21659 0.98031 0.83593 0.89443 1.21791 0.87824 1.04538 1.05236 1.20027 0.81469 0.88241 0.84253 1.90745 1.48665 1.13638 1.83494 1.42389 1.64759 1.10873 1.07408 1.17239 1.20475 0.92684 0.86300 1.24125 1.06227 0.93676 0.96704 1.78274 1.24969 1.04197 1.01632 1.44553 1.35755 1.03546 1.06972 1.19831 1.47358 0.97030 0.81315 0.86619 1.25649 0.95828 0.94601 1.01048 1.70210 1.34023 0.98828 1.36492 0.85893 0.79459 0.78353 0.80429 1.19132 1.20138 1.19157 1.21248 1.16878 0.94602 0.90534 1.23592 0.75858 0.87391 0.84848 1.90722 1.42990 1.15286 1.84186 1.86613 1.78613 1.42568 1.18235 1.22211 0.94723 0.91353 0.83944 1.22494 0.98414 0.99166 1.03996 1.21828 1.03142 0.99586 0.94959 1.22510 0.95498 1.01863 1.04374 0.92497 0.93475 0.88165 0.89734 0.89504 0.89275 0.76432 0.80768 0.91376 0.83600 0.91977 0.91077 0.89656 0.91497 0.90443 0.91472 0.89577 0.91010 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.28 101.05 1.04 1.20 16 2 O -0.35 -4.47 9.49 -49.11 -0.47 -4.93 16 3 C 0.12 1.68 1.02 -92.93 -0.09 1.59 16 4 C -0.14 -1.55 8.81 37.16 0.33 -1.22 16 5 C 0.48 8.75 5.52 -10.98 -0.06 8.69 16 6 O -0.49 -11.05 11.82 -18.11 -0.21 -11.26 16 7 N -0.61 -11.04 4.60 -10.00 -0.05 -11.09 16 8 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 9 C -0.03 -0.85 10.85 -17.04 -0.18 -1.03 16 10 N -0.26 -7.59 10.40 30.80 0.32 -7.27 16 11 N -0.14 -3.86 3.74 -11.41 -0.04 -3.90 16 12 C -0.32 -8.51 10.25 -14.82 -0.15 -8.67 16 13 H 0.12 2.70 7.83 -52.48 -0.41 2.29 16 14 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 15 N -0.77 -21.56 11.81 55.49 0.66 -20.90 16 16 Si 0.93 18.88 29.55 -169.99 -5.02 13.86 16 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 21 C 0.44 6.68 4.92 36.01 0.18 6.86 16 22 O -0.45 -8.01 10.16 -26.58 -0.27 -8.28 16 23 O -0.34 -4.38 8.97 -44.43 -0.40 -4.78 16 24 C 0.11 1.21 1.13 -90.62 -0.10 1.11 16 25 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 26 C -0.14 -1.05 8.85 37.16 0.33 -0.72 16 27 C -0.19 -2.06 8.37 37.16 0.31 -1.74 16 28 H 0.06 0.78 6.62 -51.93 -0.34 0.44 16 29 H 0.05 0.57 6.69 -51.93 -0.35 0.22 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 5.90 8.26 -40.82 -0.34 5.56 16 35 H 0.18 4.68 5.92 -52.48 -0.31 4.36 16 36 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.15 2.83 8.06 -52.48 -0.42 2.41 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.11 5.89 -51.93 -0.31 0.81 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 1.23 5.89 -51.93 -0.31 0.92 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -34.25 377.15 -5.34 -39.58 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.57 Total: 11.81 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 1.04 Total: 1.48 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.89 Total: -43.16 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.35 Total: -29.25 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.25 -5.34 -39.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824757522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.100 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds