Wall clock time and date at job start Wed Apr 1 2020 00:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46943 * 60.00124 * 3 2 1 6 6 O 1.21300 * 120.00113 * 215.00130 * 5 3 2 7 7 N 1.34778 * 119.99908 * 34.99789 * 5 3 2 8 8 C 1.40595 * 119.99807 * 180.02562 * 7 5 3 9 9 C 1.40650 * 126.08522 * 359.68890 * 8 7 5 10 10 N 1.30909 * 108.39014 * 179.81956 * 9 8 7 11 11 N 1.40064 * 108.40514 * 0.44333 * 10 9 8 12 12 C 1.37315 * 126.06991 * 179.69940 * 11 10 9 13 13 H 1.08005 * 120.00312 * 180.02562 * 12 11 10 14 14 C 1.38986 * 120.00237 * 0.02562 * 12 11 10 15 15 N 1.31295 * 119.99616 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00352 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47115 * 60.00368 * 16 14 12 18 18 H 1.48503 * 109.47123 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47009 * 299.99920 * 16 14 12 20 20 C 1.35677 * 126.08275 * 180.02562 * 8 7 5 21 21 C 1.50700 * 109.47165 * 300.00039 * 3 2 1 22 22 O 1.20829 * 119.99752 * 145.00086 * 21 3 2 23 23 O 1.34229 * 120.00119 * 324.99999 * 21 3 2 24 24 C 1.45198 * 117.00048 * 180.02562 * 23 21 3 25 25 C 1.52999 * 109.47247 * 59.99906 * 24 23 21 26 26 C 1.52999 * 109.47297 * 180.02562 * 24 23 21 27 27 C 1.53004 * 109.46909 * 299.99794 * 24 23 21 28 28 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47090 * 59.99900 * 4 3 2 32 32 H 1.08996 * 109.47307 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47184 * 300.00269 * 4 3 2 34 34 H 0.96996 * 120.00091 * 0.02562 * 7 5 3 35 35 H 1.08008 * 125.80108 * 359.96726 * 9 8 7 36 36 H 0.97005 * 119.99712 * 180.02562 * 15 14 12 37 37 H 1.08006 * 126.24702 * 359.96867 * 20 8 7 38 38 H 1.09006 * 109.46951 * 59.99858 * 25 24 23 39 39 H 1.08992 * 109.47241 * 179.97438 * 25 24 23 40 40 H 1.09006 * 109.46734 * 300.00296 * 25 24 23 41 41 H 1.08999 * 109.47132 * 59.99650 * 26 24 23 42 42 H 1.08992 * 109.47313 * 180.02562 * 26 24 23 43 43 H 1.09006 * 109.46858 * 300.00116 * 26 24 23 44 44 H 1.08998 * 109.47189 * 60.00311 * 27 24 23 45 45 H 1.09001 * 109.46891 * 179.97438 * 27 24 23 46 46 H 1.08999 * 109.47175 * 300.00139 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 1.5657 2.0533 1.2305 6 8 1.3710 3.2493 1.1761 7 7 1.3842 1.3931 2.3914 8 6 0.9689 2.0907 3.5393 9 6 0.7128 3.4712 3.6223 10 7 0.3446 3.7500 4.8472 11 7 0.3607 2.5654 5.5943 12 6 0.0422 2.4440 6.9245 13 1 0.0886 1.4779 7.4050 14 6 -0.3399 3.5646 7.6527 15 7 -0.3968 4.7390 7.0684 16 14 -0.7724 3.3997 9.4624 17 1 0.4000 2.8717 10.2054 18 1 -1.1449 4.7307 10.0056 19 1 -1.9167 2.4655 9.6147 20 6 0.7498 1.5530 4.7655 21 6 1.5657 2.0533 -1.2305 22 8 1.3718 3.2447 -1.1761 23 8 1.3850 1.3960 -2.3867 24 6 0.9565 2.1804 -3.5310 25 6 2.0002 3.2585 -3.8298 26 6 0.8044 1.2659 -4.7481 27 6 -0.3871 2.8432 -3.2206 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8575 0.6435 -0.8891 32 1 3.9789 2.1803 0.0011 33 1 3.8568 0.6438 0.8908 34 1 1.5402 0.4368 2.4350 35 1 0.8023 4.1802 2.8125 36 1 -0.6631 5.5211 7.5767 37 1 0.8622 0.5135 5.0364 38 1 2.9574 2.7862 -4.0509 39 1 1.6788 3.8471 -4.6890 40 1 2.1081 3.9100 -2.9625 41 1 0.0607 0.4981 -4.5350 42 1 0.4832 1.8548 -5.6072 43 1 1.7614 0.7933 -4.9694 44 1 -0.2791 3.4947 -2.3535 45 1 -0.7085 3.4325 -4.0795 46 1 -1.1306 2.0752 -3.0077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824757522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:13 Heat of formation + Delta-G solvation = -91.347948 kcal Electronic energy + Delta-G solvation = -30931.877011 eV Core-core repulsion = 26631.006081 eV Total energy + Delta-G solvation = -4300.870930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.63172 -41.64538 -40.58837 -38.74058 -38.02406 -35.96470 -35.06273 -34.94863 -33.24226 -32.23526 -29.69862 -28.44475 -28.30581 -27.62118 -27.04880 -26.41884 -24.37662 -22.89328 -21.85246 -21.20696 -20.59147 -19.56947 -18.86544 -18.61219 -17.54824 -17.49038 -17.40667 -16.82509 -16.54095 -16.21591 -16.18113 -15.63656 -15.49421 -15.27206 -15.06764 -14.85018 -14.64958 -14.54129 -13.80725 -13.65961 -13.51090 -13.42144 -13.32896 -13.29993 -13.13587 -12.97228 -12.91269 -12.88289 -12.86386 -12.77363 -12.50569 -12.18481 -12.14301 -11.90676 -11.68392 -11.40635 -11.12883 -11.02130 -10.84248 -10.37331 -10.12549 -8.58266 -8.47766 -6.25900 0.86459 1.08843 1.20193 1.39949 1.43148 1.56598 1.81630 2.05567 2.22529 2.34416 2.46306 2.82281 3.08537 3.25343 3.57826 3.69218 3.71775 3.76753 3.92241 4.26536 4.30531 4.41411 4.46928 4.52239 4.54804 4.55992 4.59043 4.71289 4.71967 4.80077 4.83172 4.87002 4.96604 4.98190 5.01417 5.10490 5.21791 5.25956 5.26509 5.36065 5.43278 5.52344 5.93924 6.26568 6.58022 6.67743 6.71193 7.21063 7.44370 7.64871 8.51323 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026157 B = 0.002555 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.190268 B =10955.058144 C =11288.724345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.339 6.339 3 C 0.126 3.874 4 C -0.137 4.137 5 C 0.478 3.522 6 O -0.536 6.536 7 N -0.599 5.599 8 C -0.045 4.045 9 C -0.059 4.059 10 N -0.309 5.309 11 N -0.165 5.165 12 C -0.353 4.353 13 H 0.144 0.856 14 C -0.007 4.007 15 N -0.825 5.825 16 Si 1.020 2.980 17 H -0.252 1.252 18 H -0.280 1.280 19 H -0.252 1.252 20 C -0.075 4.075 21 C 0.446 3.554 22 O -0.484 6.484 23 O -0.337 6.337 24 C 0.103 3.897 25 C -0.181 4.181 26 C -0.132 4.132 27 C -0.184 4.184 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.422 0.578 35 H 0.162 0.838 36 H 0.276 0.724 37 H 0.192 0.808 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.094 0.906 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.997 -13.776 -19.267 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.257 6.257 3 C 0.081 3.919 4 C -0.194 4.194 5 C 0.262 3.738 6 O -0.413 6.413 7 N -0.245 5.245 8 C -0.151 4.151 9 C -0.234 4.234 10 N -0.142 5.142 11 N 0.067 4.933 12 C -0.484 4.484 13 H 0.161 0.839 14 C -0.219 4.219 15 N -0.453 5.453 16 Si 0.839 3.161 17 H -0.176 1.176 18 H -0.205 1.205 19 H -0.176 1.176 20 C -0.225 4.225 21 C 0.286 3.714 22 O -0.369 6.369 23 O -0.254 6.254 24 C 0.068 3.932 25 C -0.238 4.238 26 C -0.188 4.188 27 C -0.241 4.241 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.155 0.845 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.260 0.740 35 H 0.178 0.822 36 H 0.086 0.914 37 H 0.209 0.791 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.475 -11.579 -18.522 22.118 hybrid contribution -0.254 0.006 0.183 0.313 sum 3.221 -11.573 -18.339 21.923 Atomic orbital electron populations 1.23235 0.79292 1.05948 1.00060 1.88048 1.21288 1.22180 1.94192 1.21522 0.99847 0.83578 0.86989 1.21911 0.85210 1.04787 1.07470 1.20847 0.79755 0.87953 0.85240 1.90738 1.50110 1.16036 1.84369 1.42279 1.64513 1.11622 1.06109 1.17266 1.18502 0.91492 0.87838 1.24095 1.07737 0.95522 0.96077 1.78175 1.26741 1.06405 1.02832 1.44852 1.36947 1.03759 1.07788 1.20621 1.47773 0.98601 0.81379 0.83897 1.26915 0.94840 0.93749 1.06397 1.70404 1.36014 1.00019 1.38850 0.84642 0.79825 0.78307 0.73371 1.17586 1.20468 1.17627 1.21991 1.14821 0.95887 0.89850 1.23702 0.75118 0.86928 0.85652 1.90740 1.44468 1.16882 1.84827 1.86601 1.78151 1.42565 1.18086 1.22597 0.94258 0.92225 0.84162 1.22467 0.99106 0.98895 1.03356 1.21851 1.03909 0.99335 0.93738 1.22488 0.96237 1.01639 1.03720 0.94688 0.93933 0.84528 0.86982 0.90372 0.87600 0.74039 0.82154 0.91403 0.79149 0.90848 0.88956 0.92969 0.91076 0.88211 0.90581 0.93373 0.88763 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 10.28 113.37 1.17 1.39 16 2 O -0.34 -7.75 9.49 -135.71 -1.29 -9.03 16 3 C 0.13 3.48 1.02 -12.29 -0.01 3.47 16 4 C -0.14 -2.84 8.81 71.98 0.63 -2.21 16 5 C 0.48 17.67 5.52 87.66 0.48 18.16 16 6 O -0.54 -25.36 11.82 19.52 0.23 -25.13 16 7 N -0.60 -21.29 4.60 -303.93 -1.40 -22.69 16 8 C -0.05 -2.09 6.90 37.73 0.26 -1.83 16 9 C -0.06 -3.32 10.85 85.42 0.93 -2.39 16 10 N -0.31 -18.97 10.40 -56.46 -0.59 -19.56 16 11 N -0.16 -9.17 3.74 -190.01 -0.71 -9.88 16 12 C -0.35 -18.60 10.25 84.01 0.86 -17.74 16 13 H 0.14 6.45 7.83 -2.91 -0.02 6.42 16 14 C -0.01 -0.38 5.50 84.95 0.47 0.08 16 15 N -0.83 -48.11 11.81 21.66 0.26 -47.85 16 16 Si 1.02 38.53 29.55 68.60 2.03 40.56 16 17 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 18 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 20 C -0.08 -3.45 11.49 83.37 0.96 -2.50 16 21 C 0.45 13.39 4.92 71.24 0.35 13.74 16 22 O -0.48 -18.11 10.16 29.44 0.30 -17.81 16 23 O -0.34 -8.16 8.97 -46.47 -0.42 -8.58 16 24 C 0.10 2.05 1.13 -10.79 -0.01 2.04 16 25 C -0.18 -3.57 8.37 71.98 0.60 -2.97 16 26 C -0.13 -1.59 8.85 71.98 0.64 -0.95 16 27 C -0.18 -4.01 8.37 71.98 0.60 -3.40 16 28 H 0.03 0.93 6.62 -2.39 -0.02 0.91 16 29 H 0.04 0.98 6.69 -2.38 -0.02 0.96 16 30 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.42 11.44 8.26 -92.71 -0.77 10.68 16 35 H 0.16 9.30 5.92 -2.91 -0.02 9.28 16 36 H 0.28 14.87 8.31 -92.70 -0.77 14.10 16 37 H 0.19 6.79 8.06 -2.91 -0.02 6.77 16 38 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.05 1.41 5.89 -2.38 -0.01 1.39 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.05 1.44 5.89 -2.39 -0.01 1.43 16 45 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -80.79 377.15 6.58 -74.20 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: 0.25 Total: 40.88 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 7.92 Total: 4.89 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -2.44 Total: -99.98 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -1.18 Total: -60.55 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -80.79 6.58 -74.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824757522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.146 kcal (2) G-P(sol) polarization free energy of solvation -80.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds