Wall clock time and date at job start Tue Mar 31 2020 22:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47138 * 2 1 4 4 C 1.52999 * 109.47385 * 240.00292 * 2 1 3 5 5 O 1.45199 * 109.47192 * 119.99768 * 2 1 3 6 6 C 1.34660 * 116.99517 * 60.00460 * 5 2 1 7 7 O 1.21509 * 120.00059 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99594 * 179.97438 * 6 5 2 9 9 C 1.40198 * 119.99843 * 179.97438 * 8 6 5 10 10 C 1.40404 * 125.97061 * 359.97438 * 9 8 6 11 11 C 1.35244 * 107.86387 * 179.73519 * 10 9 8 12 12 N 1.34970 * 107.86229 * 0.39552 * 11 10 9 13 13 C 1.46497 * 125.97935 * 179.87498 * 12 11 10 14 14 C 1.52997 * 109.47188 * 164.71172 * 13 12 11 15 15 C 1.53006 * 109.46631 * 284.70918 * 13 12 11 16 16 C 1.50697 * 109.47081 * 44.70736 * 13 12 11 17 17 O 1.21213 * 120.00349 * 0.02562 * 16 13 12 18 18 O 1.34317 * 119.99683 * 180.02562 * 16 13 12 19 19 C 1.34924 * 116.99594 * 179.97438 * 18 16 13 20 20 H 1.07997 * 120.00501 * 0.02562 * 19 18 16 21 21 C 1.38757 * 119.99455 * 180.02562 * 19 18 16 22 22 N 1.31440 * 120.00306 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99576 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47231 * 90.00208 * 23 21 19 25 25 H 1.48504 * 109.47292 * 210.00164 * 23 21 19 26 26 H 1.48500 * 109.47521 * 330.00266 * 23 21 19 27 27 N 1.31205 * 125.97319 * 179.97438 * 9 8 6 28 28 H 1.08988 * 109.47387 * 299.99973 * 1 2 3 29 29 H 1.09005 * 109.46874 * 60.00374 * 1 2 3 30 30 H 1.08998 * 109.46579 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47582 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47192 * 300.00236 * 3 2 1 33 33 H 1.09002 * 109.46840 * 59.99815 * 3 2 1 34 34 H 1.08998 * 109.47261 * 299.99581 * 4 2 1 35 35 H 1.09000 * 109.47318 * 60.00160 * 4 2 1 36 36 H 1.08998 * 109.47347 * 179.97438 * 4 2 1 37 37 H 0.97003 * 119.99799 * 359.97438 * 8 6 5 38 38 H 1.07994 * 126.06632 * 359.97438 * 10 9 8 39 39 H 1.08001 * 126.07007 * 180.24409 * 11 10 9 40 40 H 1.09002 * 109.47153 * 299.99573 * 14 13 12 41 41 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 42 42 H 1.09004 * 109.47261 * 59.99745 * 14 13 12 43 43 H 1.08993 * 109.46955 * 300.00228 * 15 13 12 44 44 H 1.09000 * 109.47050 * 60.00057 * 15 13 12 45 45 H 1.09001 * 109.47002 * 179.97438 * 15 13 12 46 46 H 0.97000 * 119.99743 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9725 1.3383 7 8 0.9509 -2.5096 0.5039 8 7 2.0680 -2.6659 2.4166 9 6 1.6909 -4.0068 2.5759 10 6 0.8874 -4.7478 1.6947 11 6 0.7617 -5.9966 2.1984 12 7 1.4499 -6.0463 3.3584 13 6 1.5760 -7.2133 4.2350 14 6 2.7211 -6.9868 5.2241 15 6 0.2695 -7.4162 5.0050 16 6 1.8645 -8.4369 3.4039 17 8 1.9563 -8.3433 2.1989 18 8 2.0201 -9.6311 3.9986 19 6 2.2759 -10.6858 3.1970 20 1 2.3475 -10.5471 2.1284 21 6 2.4470 -11.9488 3.7457 22 7 2.3594 -12.1177 5.0462 23 14 2.8019 -13.4088 2.6359 24 1 4.2698 -13.5559 2.4656 25 1 2.2486 -14.6429 3.2494 26 1 2.1694 -13.1885 1.3105 27 7 2.0272 -4.7885 3.5746 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6768 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 2.6282 -2.2371 3.0824 38 1 0.4508 -4.3859 0.7756 39 1 0.2069 -6.8091 1.7529 40 1 3.6518 -6.8423 4.6755 41 1 2.8146 -7.8550 5.8765 42 1 2.5123 -6.1018 5.8251 43 1 0.0608 -6.5312 5.6059 44 1 -0.5463 -7.5775 4.3003 45 1 0.3631 -8.2848 5.6569 46 1 2.4786 -13.0007 5.4297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850315461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:03 Heat of formation + Delta-G solvation = -66.776218 kcal Electronic energy + Delta-G solvation = -29925.961294 eV Core-core repulsion = 25626.155874 eV Total energy + Delta-G solvation = -4299.805420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45837 -40.75610 -39.23950 -37.65084 -35.88330 -35.02753 -34.62279 -33.84722 -32.25198 -29.95395 -28.97594 -27.70314 -27.62969 -27.11175 -25.72854 -24.08794 -22.86681 -21.77375 -20.68950 -19.95384 -19.36028 -18.12739 -17.87035 -17.26995 -16.61095 -16.45942 -16.17197 -15.56371 -15.04180 -14.91912 -14.73314 -14.66853 -14.37317 -14.09541 -13.78490 -13.45689 -13.03127 -12.82716 -12.78193 -12.67442 -12.46513 -12.18566 -12.17659 -11.98745 -11.93123 -11.82102 -11.80759 -11.58238 -11.44595 -11.33491 -11.15316 -10.79260 -10.59508 -10.55993 -10.49896 -10.43554 -10.01010 -9.95351 -9.19357 -8.70305 -8.56708 -8.02951 -6.54288 -4.22470 1.58819 2.01592 2.58383 2.73748 2.99120 3.13498 3.18904 3.30958 3.35558 3.79501 3.90968 4.27348 4.41657 4.46946 4.60898 4.88180 4.97985 5.06521 5.16395 5.17716 5.25828 5.33292 5.40583 5.48190 5.51732 5.59252 5.68174 5.69890 5.80212 5.86543 5.97869 6.03990 6.04940 6.10339 6.12810 6.18441 6.25032 6.38206 6.46033 6.54797 6.95930 7.20827 7.26363 7.36154 7.79367 8.02271 8.17401 8.49469 8.93977 9.63483 10.62610 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025554 B = 0.002237 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.441992 B =12516.034391 C =13081.795573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.186 4.186 5 O -0.361 6.361 6 C 0.662 3.338 7 O -0.541 6.541 8 N -0.612 5.612 9 C 0.303 3.697 10 C -0.284 4.284 11 C 0.111 3.889 12 N -0.341 5.341 13 C 0.209 3.791 14 C -0.137 4.137 15 C -0.152 4.152 16 C 0.388 3.612 17 O -0.542 6.542 18 O -0.197 6.197 19 C -0.384 4.384 20 H 0.098 0.902 21 C 0.046 3.954 22 N -0.859 5.859 23 Si 0.945 3.055 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.266 1.266 27 N -0.315 5.315 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.418 0.582 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.790 22.052 -4.326 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.198 4.198 4 C -0.243 4.243 5 O -0.275 6.275 6 C 0.415 3.585 7 O -0.427 6.427 8 N -0.266 5.266 9 C 0.049 3.951 10 C -0.314 4.314 11 C -0.036 4.036 12 N -0.125 5.125 13 C 0.124 3.876 14 C -0.195 4.195 15 C -0.210 4.210 16 C 0.233 3.767 17 O -0.438 6.438 18 O -0.103 6.103 19 C -0.460 4.460 20 H 0.115 0.885 21 C -0.160 4.160 22 N -0.496 5.496 23 Si 0.769 3.231 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.190 1.190 27 N -0.145 5.145 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.254 0.746 38 H 0.187 0.813 39 H 0.193 0.807 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.114 0.886 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.457 21.528 -3.793 21.997 hybrid contribution 0.118 -0.468 -1.055 1.160 sum -2.339 21.059 -4.848 21.736 Atomic orbital electron populations 1.22533 0.93760 1.05352 1.02565 1.22138 0.94539 0.91430 0.81833 1.21868 1.02341 0.92373 1.03188 1.22540 1.01718 1.03710 0.96319 1.86294 1.71559 1.22843 1.46852 1.17659 0.78806 0.80616 0.81421 1.90863 1.39728 1.69580 1.42515 1.40752 1.53456 1.08397 1.24008 1.18610 0.97768 0.83610 0.95148 1.21661 1.11342 0.92855 1.05570 1.22607 0.95825 0.98122 0.87057 1.47973 1.38794 1.07395 1.18335 1.19921 0.99646 0.79765 0.88298 1.21876 0.95959 1.03660 0.97972 1.22221 0.94246 1.03940 1.00580 1.22765 0.80619 0.85950 0.87391 1.90613 1.51657 1.86004 1.15563 1.83845 1.72674 1.13905 1.39878 1.21275 1.50017 0.83372 0.91315 0.88477 1.25349 0.96031 0.97961 0.96612 1.69978 1.45205 1.24116 1.10257 0.85650 0.79000 0.79060 0.79391 1.19772 1.20191 1.19000 1.77204 1.24094 0.90729 1.22477 0.92094 0.91012 0.89135 0.91389 0.90005 0.91417 0.89109 0.91003 0.92050 0.74553 0.81279 0.80722 0.91592 0.89224 0.90581 0.91084 0.91650 0.88554 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 2 C 0.14 1.23 1.13 -90.62 -0.10 1.12 16 3 C -0.14 -0.86 8.85 37.16 0.33 -0.54 16 4 C -0.19 -1.69 8.37 37.16 0.31 -1.38 16 5 O -0.36 -3.99 9.94 -40.38 -0.40 -4.39 16 6 C 0.66 8.76 8.02 54.06 0.43 9.20 16 7 O -0.54 -8.05 9.01 -19.28 -0.17 -8.22 16 8 N -0.61 -8.15 5.46 -15.55 -0.08 -8.24 16 9 C 0.30 5.05 8.11 -154.36 -1.25 3.80 16 10 C -0.28 -4.95 9.61 -39.83 -0.38 -5.33 16 11 C 0.11 2.03 9.59 -17.24 -0.17 1.87 16 12 N -0.34 -6.39 3.34 -49.74 -0.17 -6.56 16 13 C 0.21 3.95 1.18 -132.97 -0.16 3.79 16 14 C -0.14 -2.34 8.02 37.16 0.30 -2.05 16 15 C -0.15 -2.42 8.66 37.16 0.32 -2.10 16 16 C 0.39 9.26 6.44 36.00 0.23 9.49 16 17 O -0.54 -14.09 13.67 -19.05 -0.26 -14.35 16 18 O -0.20 -5.31 9.55 -20.73 -0.20 -5.51 16 19 C -0.38 -10.86 9.64 30.92 0.30 -10.56 16 20 H 0.10 2.79 6.86 -52.49 -0.36 2.43 16 21 C 0.05 1.23 5.49 -17.53 -0.10 1.13 16 22 N -0.86 -23.95 13.67 55.48 0.76 -23.19 16 23 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 N -0.32 -5.60 11.67 31.44 0.37 -5.23 16 28 H 0.06 0.50 8.14 -51.94 -0.42 0.08 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.42 4.45 8.93 -40.82 -0.36 4.08 16 38 H 0.17 2.89 5.91 -52.49 -0.31 2.58 16 39 H 0.18 3.12 7.44 -52.49 -0.39 2.73 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.09 1.53 8.12 -51.93 -0.42 1.10 16 42 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.10 1.56 8.11 -51.93 -0.42 1.14 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -32.63 383.56 -5.68 -38.31 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.66 Total: 8.85 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 0.38 Total: 7.15 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.87 Total: -43.22 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.03 Total: -32.47 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.63 -5.68 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850315461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.470 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds