Wall clock time and date at job start Tue Mar 31 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47138 * 2 1 4 4 C 1.52999 * 109.47385 * 240.00292 * 2 1 3 5 5 O 1.45199 * 109.47192 * 119.99768 * 2 1 3 6 6 C 1.34660 * 116.99517 * 60.00460 * 5 2 1 7 7 O 1.21509 * 120.00059 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99594 * 179.97438 * 6 5 2 9 9 C 1.40198 * 119.99843 * 179.97438 * 8 6 5 10 10 C 1.40404 * 125.97061 * 359.97438 * 9 8 6 11 11 C 1.35244 * 107.86387 * 179.73519 * 10 9 8 12 12 N 1.34970 * 107.86229 * 0.39552 * 11 10 9 13 13 C 1.46497 * 125.97935 * 179.87498 * 12 11 10 14 14 C 1.52997 * 109.47188 * 164.71172 * 13 12 11 15 15 C 1.53006 * 109.46631 * 284.70918 * 13 12 11 16 16 C 1.50697 * 109.47081 * 44.70736 * 13 12 11 17 17 O 1.21213 * 120.00349 * 0.02562 * 16 13 12 18 18 O 1.34317 * 119.99683 * 180.02562 * 16 13 12 19 19 C 1.34924 * 116.99594 * 179.97438 * 18 16 13 20 20 H 1.07997 * 120.00501 * 0.02562 * 19 18 16 21 21 C 1.38757 * 119.99455 * 180.02562 * 19 18 16 22 22 N 1.31440 * 120.00306 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99576 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47231 * 90.00208 * 23 21 19 25 25 H 1.48504 * 109.47292 * 210.00164 * 23 21 19 26 26 H 1.48500 * 109.47521 * 330.00266 * 23 21 19 27 27 N 1.31205 * 125.97319 * 179.97438 * 9 8 6 28 28 H 1.08988 * 109.47387 * 299.99973 * 1 2 3 29 29 H 1.09005 * 109.46874 * 60.00374 * 1 2 3 30 30 H 1.08998 * 109.46579 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47582 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47192 * 300.00236 * 3 2 1 33 33 H 1.09002 * 109.46840 * 59.99815 * 3 2 1 34 34 H 1.08998 * 109.47261 * 299.99581 * 4 2 1 35 35 H 1.09000 * 109.47318 * 60.00160 * 4 2 1 36 36 H 1.08998 * 109.47347 * 179.97438 * 4 2 1 37 37 H 0.97003 * 119.99799 * 359.97438 * 8 6 5 38 38 H 1.07994 * 126.06632 * 359.97438 * 10 9 8 39 39 H 1.08001 * 126.07007 * 180.24409 * 11 10 9 40 40 H 1.09002 * 109.47153 * 299.99573 * 14 13 12 41 41 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 42 42 H 1.09004 * 109.47261 * 59.99745 * 14 13 12 43 43 H 1.08993 * 109.46955 * 300.00228 * 15 13 12 44 44 H 1.09000 * 109.47050 * 60.00057 * 15 13 12 45 45 H 1.09001 * 109.47002 * 179.97438 * 15 13 12 46 46 H 0.97000 * 119.99743 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9725 1.3383 7 8 0.9509 -2.5096 0.5039 8 7 2.0680 -2.6659 2.4166 9 6 1.6909 -4.0068 2.5759 10 6 0.8874 -4.7478 1.6947 11 6 0.7617 -5.9966 2.1984 12 7 1.4499 -6.0463 3.3584 13 6 1.5760 -7.2133 4.2350 14 6 2.7211 -6.9868 5.2241 15 6 0.2695 -7.4162 5.0050 16 6 1.8645 -8.4369 3.4039 17 8 1.9563 -8.3433 2.1989 18 8 2.0201 -9.6311 3.9986 19 6 2.2759 -10.6858 3.1970 20 1 2.3475 -10.5471 2.1284 21 6 2.4470 -11.9488 3.7457 22 7 2.3594 -12.1177 5.0462 23 14 2.8019 -13.4088 2.6359 24 1 4.2698 -13.5559 2.4656 25 1 2.2486 -14.6429 3.2494 26 1 2.1694 -13.1885 1.3105 27 7 2.0272 -4.7885 3.5746 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6768 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 2.6282 -2.2371 3.0824 38 1 0.4508 -4.3859 0.7756 39 1 0.2069 -6.8091 1.7529 40 1 3.6518 -6.8423 4.6755 41 1 2.8146 -7.8550 5.8765 42 1 2.5123 -6.1018 5.8251 43 1 0.0608 -6.5312 5.6059 44 1 -0.5463 -7.5775 4.3003 45 1 0.3631 -8.2848 5.6569 46 1 2.4786 -13.0007 5.4297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850315461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:02 Heat of formation + Delta-G solvation = -86.789729 kcal Electronic energy + Delta-G solvation = -29926.829145 eV Core-core repulsion = 25626.155874 eV Total energy + Delta-G solvation = -4300.673271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.77592 -41.90164 -41.04866 -38.69519 -37.57671 -36.61859 -35.83868 -34.77324 -34.30186 -31.33901 -30.36280 -28.46529 -28.33141 -28.26358 -27.76440 -25.38053 -24.33619 -23.20838 -21.87995 -21.13611 -20.77568 -19.94244 -19.19703 -18.77419 -17.95681 -17.58754 -17.45999 -16.95536 -16.72046 -16.54892 -16.12084 -15.81694 -15.71615 -15.30248 -14.94285 -14.70252 -14.51769 -14.13540 -14.09275 -13.72129 -13.40283 -13.36548 -13.27819 -13.16694 -13.13007 -13.09298 -12.87988 -12.85783 -12.69569 -12.53845 -12.39912 -12.28500 -12.19511 -12.05841 -11.94631 -11.82202 -11.41934 -11.08127 -11.04001 -10.73513 -9.95037 -9.41242 -8.58613 -6.38217 0.43414 0.68108 1.17903 1.28227 1.37318 1.44555 1.51874 1.53192 2.06527 2.08621 2.49741 2.91635 2.92813 3.48212 3.63340 3.74587 3.79523 3.81399 3.96048 4.19644 4.26541 4.33488 4.55986 4.59620 4.61379 4.65084 4.65982 4.72253 4.75316 4.78344 4.80828 4.88850 4.91788 4.95480 5.03415 5.08109 5.12656 5.20492 5.32457 5.33551 5.46694 5.67572 5.75642 5.89430 6.03116 6.49597 6.68267 6.85918 7.14184 7.60697 8.60379 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025554 B = 0.002237 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.441992 B =12516.034391 C =13081.795573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.125 3.875 3 C -0.135 4.135 4 C -0.184 4.184 5 O -0.356 6.356 6 C 0.662 3.338 7 O -0.558 6.558 8 N -0.604 5.604 9 C 0.309 3.691 10 C -0.284 4.284 11 C 0.097 3.903 12 N -0.352 5.352 13 C 0.213 3.787 14 C -0.130 4.130 15 C -0.144 4.144 16 C 0.389 3.611 17 O -0.568 6.568 18 O -0.217 6.217 19 C -0.421 4.421 20 H 0.081 0.919 21 C 0.004 3.996 22 N -0.891 5.891 23 Si 1.013 2.987 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.265 1.265 27 N -0.318 5.318 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.432 0.568 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.691 23.676 -4.386 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.090 3.910 3 C -0.192 4.192 4 C -0.241 4.241 5 O -0.270 6.270 6 C 0.416 3.584 7 O -0.445 6.445 8 N -0.260 5.260 9 C 0.053 3.947 10 C -0.314 4.314 11 C -0.050 4.050 12 N -0.136 5.136 13 C 0.128 3.872 14 C -0.187 4.187 15 C -0.202 4.202 16 C 0.234 3.766 17 O -0.466 6.466 18 O -0.124 6.124 19 C -0.496 4.496 20 H 0.099 0.901 21 C -0.198 4.198 22 N -0.528 5.528 23 Si 0.832 3.168 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.190 1.190 27 N -0.148 5.148 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.270 0.730 38 H 0.189 0.811 39 H 0.189 0.811 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.083 0.917 45 H 0.111 0.889 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.352 23.200 -3.836 23.633 hybrid contribution 0.074 -0.789 -1.122 1.374 sum -2.278 22.411 -4.959 23.066 Atomic orbital electron populations 1.22497 0.93596 1.03893 1.03907 1.22551 0.94888 0.92686 0.80903 1.21902 1.02532 0.90173 1.04605 1.22512 1.01724 1.02298 0.97541 1.86331 1.71343 1.21403 1.47959 1.17766 0.78429 0.81260 0.80987 1.90866 1.40422 1.70180 1.43076 1.40715 1.53523 1.07215 1.24591 1.18742 0.96903 0.84720 0.94367 1.21732 1.11358 0.92691 1.05636 1.22694 0.96285 0.98535 0.87443 1.47993 1.39355 1.07660 1.18577 1.20019 1.01812 0.77646 0.87723 1.21857 0.94499 1.04871 0.97470 1.22205 0.92462 1.05183 1.00383 1.23859 0.78456 0.86537 0.87716 1.90582 1.52341 1.86516 1.17150 1.83863 1.73611 1.14719 1.40163 1.21406 1.52479 0.84744 0.91021 0.90116 1.26432 0.94875 1.00176 0.98272 1.70041 1.45436 1.25460 1.11816 0.84682 0.79288 0.75510 0.77287 1.18702 1.18194 1.18961 1.77177 1.24263 0.90420 1.22929 0.91637 0.88817 0.91892 0.91131 0.87698 0.90881 0.92017 0.88749 0.91974 0.72965 0.81138 0.81067 0.93061 0.89361 0.87711 0.88091 0.91678 0.88888 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 8.37 71.98 0.60 -2.29 16 2 C 0.13 2.03 1.13 -10.79 -0.01 2.01 16 3 C -0.14 -1.28 8.85 71.98 0.64 -0.64 16 4 C -0.18 -3.11 8.37 71.98 0.60 -2.51 16 5 O -0.36 -7.40 9.94 -55.69 -0.55 -7.95 16 6 C 0.66 17.06 8.02 129.79 1.04 18.10 16 7 O -0.56 -16.63 9.01 19.81 0.18 -16.45 16 8 N -0.60 -15.50 5.46 -433.50 -2.36 -17.86 16 9 C 0.31 10.07 8.11 133.31 1.08 11.16 16 10 C -0.28 -9.94 9.61 22.11 0.21 -9.73 16 11 C 0.10 3.60 9.59 83.52 0.80 4.41 16 12 N -0.35 -13.12 3.34 -311.29 -1.04 -14.16 16 13 C 0.21 8.05 1.18 2.86 0.00 8.06 16 14 C -0.13 -4.35 8.02 71.98 0.58 -3.77 16 15 C -0.14 -4.49 8.66 71.98 0.62 -3.87 16 16 C 0.39 19.07 6.44 71.23 0.46 19.53 16 17 O -0.57 -30.67 13.67 20.77 0.28 -30.38 16 18 O -0.22 -12.07 9.55 14.77 0.14 -11.92 16 19 C -0.42 -24.57 9.64 67.94 0.66 -23.91 16 20 H 0.08 4.85 6.86 -2.91 -0.02 4.83 16 21 C 0.00 0.24 5.49 84.88 0.47 0.70 16 22 N -0.89 -50.01 13.67 21.63 0.30 -49.72 16 23 Si 1.01 42.13 29.55 68.60 2.03 44.16 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 N -0.32 -11.01 11.67 -54.43 -0.64 -11.64 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.06 1.38 5.88 -2.39 -0.01 1.37 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.44 5.88 -2.39 -0.01 1.42 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.43 8.54 8.93 -92.71 -0.83 7.71 16 38 H 0.17 5.91 5.91 -2.91 -0.02 5.90 16 39 H 0.17 6.37 7.44 -2.91 -0.02 6.35 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.09 2.98 8.12 -2.39 -0.02 2.97 16 42 H 0.10 2.90 8.04 -2.38 -0.02 2.88 16 43 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.09 2.98 8.11 -2.39 -0.02 2.96 16 46 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -71.93 383.56 6.27 -65.67 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.18 Total: 33.01 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 7.75 Total: 17.25 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -3.74 Total: -93.38 kcal Atomic # 8 Polarization: -66.76 SS G_CDS: 0.05 Total: -66.71 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -71.93 6.27 -65.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850315461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.123 kcal (2) G-P(sol) polarization free energy of solvation -71.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds