Wall clock time and date at job start Wed Apr 1 2020 00:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 O 1.42904 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46602 * 119.99199 * 2 1 3 6 6 C 1.34774 * 120.00388 * 299.99948 * 5 2 1 7 7 O 1.21281 * 119.99707 * 0.02562 * 6 5 2 8 8 C 1.50695 * 120.00025 * 179.97438 * 6 5 2 9 9 C 1.50703 * 109.47225 * 180.02562 * 8 6 5 10 10 C 1.37638 * 120.12363 * 265.00274 * 9 8 6 11 11 C 1.38617 * 120.24274 * 179.97438 * 10 9 8 12 12 C 1.38656 * 120.50388 * 0.02562 * 11 10 9 13 13 C 1.37596 * 120.24844 * 0.02562 * 12 11 10 14 14 C 1.40689 * 120.12775 * 84.72606 * 9 8 6 15 15 C 1.41398 * 120.24733 * 0.02562 * 14 9 8 16 16 H 1.07998 * 119.99606 * 333.90099 * 15 14 9 17 17 C 1.39945 * 120.00387 * 153.90252 * 15 14 9 18 18 N 1.30820 * 119.99707 * 343.70405 * 17 15 14 19 19 Si 1.86798 * 119.99957 * 163.70761 * 17 15 14 20 20 H 1.48494 * 109.47292 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47135 * 120.00085 * 19 17 15 22 22 H 1.48501 * 109.47121 * 239.99544 * 19 17 15 23 23 C 1.50694 * 109.47317 * 239.99141 * 2 1 3 24 24 C 1.38238 * 120.00458 * 270.00422 * 23 2 1 25 25 C 1.38226 * 120.00150 * 180.02562 * 24 23 2 26 26 C 1.38234 * 120.00429 * 359.95628 * 25 24 23 27 27 C 1.38242 * 119.99445 * 0.27619 * 26 25 24 28 28 C 1.38227 * 120.00146 * 359.53758 * 27 26 25 29 29 H 1.08997 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47640 * 300.00973 * 1 2 3 31 31 H 1.09004 * 109.46706 * 60.00492 * 1 2 3 32 32 H 1.09004 * 109.46819 * 299.99439 * 3 2 1 33 33 H 1.09000 * 109.47697 * 59.99490 * 3 2 1 34 34 H 0.96705 * 113.99295 * 179.97438 * 4 3 2 35 35 H 0.97006 * 119.99705 * 120.00411 * 5 2 1 36 36 H 1.09001 * 109.47810 * 300.00291 * 8 6 5 37 37 H 1.09001 * 109.47367 * 60.00446 * 8 6 5 38 38 H 1.07993 * 119.87789 * 359.97438 * 10 9 8 39 39 H 1.08004 * 119.74550 * 179.97438 * 11 10 9 40 40 H 1.08004 * 119.87270 * 180.02562 * 12 11 10 41 41 H 1.07996 * 120.13006 * 179.97438 * 13 12 11 42 42 H 0.97004 * 119.99757 * 180.02562 * 18 17 15 43 43 H 1.08002 * 119.99616 * 359.97438 * 24 23 2 44 44 H 1.08003 * 120.00170 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00432 * 180.02562 * 26 25 24 46 46 H 1.08006 * 119.99380 * 179.72355 * 27 26 25 47 47 H 1.08002 * 120.00007 * 180.21148 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 7 2.0182 -0.6905 1.1963 6 6 1.6926 -0.2299 2.4204 7 8 0.9950 0.7560 2.5315 8 6 2.1944 -0.9405 3.6509 9 6 1.6916 -0.2303 4.8813 10 6 2.4784 0.7107 5.5056 11 6 2.0182 1.3659 6.6372 12 6 0.7630 1.0819 7.1534 13 6 -0.0401 0.1441 6.5462 14 6 0.4139 -0.5224 5.3927 15 6 -0.4053 -1.4834 4.7566 16 1 -0.2811 -1.6865 3.7032 17 6 -1.3771 -2.1714 5.4920 18 7 -1.3275 -2.1746 6.7993 19 14 -2.7450 -3.0851 4.6069 20 1 -2.5771 -2.9274 3.1400 21 1 -2.6869 -4.5263 4.9602 22 1 -4.0588 -2.5276 5.0172 23 6 2.0323 -0.7106 -1.2303 24 6 2.2627 -2.0732 -1.1960 25 6 2.7240 -2.7248 -2.3244 26 6 2.9542 -2.0141 -3.4875 27 6 2.7284 -0.6506 -3.5204 28 6 2.2634 0.0004 -2.3931 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 3.8623 2.3258 0.0002 35 1 2.5759 -1.4792 1.1074 36 1 1.8306 -1.9681 3.6509 37 1 3.2844 -0.9410 3.6512 38 1 3.4579 0.9395 5.1125 39 1 2.6425 2.1026 7.1210 40 1 0.4145 1.5988 8.0353 41 1 -1.0173 -0.0759 6.9500 42 1 -2.0009 -2.6517 7.3090 43 1 2.0830 -2.6284 -0.2872 44 1 2.9044 -3.7893 -2.2974 45 1 3.3142 -2.5233 -4.3692 46 1 2.9125 -0.0946 -4.4279 47 1 2.0838 1.0650 -2.4199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855086611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:35 Heat of formation + Delta-G solvation = -38.980953 kcal Electronic energy + Delta-G solvation = -29661.051854 eV Core-core repulsion = 25773.300991 eV Total energy + Delta-G solvation = -3887.750863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.43718 -38.83002 -37.48322 -36.56704 -34.82240 -33.57955 -32.17093 -31.30994 -30.81896 -29.51421 -29.35073 -26.67284 -26.06462 -24.96284 -23.47855 -22.48018 -20.97805 -20.82673 -19.51208 -19.19081 -17.71224 -17.26440 -17.09052 -16.05964 -15.87623 -15.38437 -15.13448 -14.80338 -14.58109 -14.31689 -14.17488 -13.85067 -13.53323 -13.39949 -13.29945 -12.99139 -12.82139 -12.55537 -12.26012 -12.18188 -11.95312 -11.75614 -11.61369 -11.51910 -11.15188 -11.12600 -10.97143 -10.94428 -10.66606 -10.60373 -10.35452 -9.95790 -9.43778 -9.32269 -9.13062 -9.02520 -8.96886 -8.85884 -8.53626 -7.26446 -7.24519 -6.69786 -4.30076 1.24574 1.30472 2.81046 3.01256 3.09440 3.14399 3.29800 3.39467 3.58634 3.77016 3.96417 4.23280 4.49029 4.70144 4.78266 4.86752 4.98864 5.16041 5.28386 5.38555 5.40469 5.51579 5.65625 5.76664 5.83334 5.85680 5.89877 5.90633 6.02453 6.09271 6.20682 6.33848 6.35163 6.39790 6.44411 6.48259 6.49347 6.55866 6.84486 6.88013 6.93086 7.12941 7.34275 7.46851 7.67190 7.68962 7.95032 8.03317 8.13099 8.17643 8.36228 8.69465 8.93618 8.96432 9.06164 10.24374 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.003681 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.311019 B = 7605.683062 C = 9091.068782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.224 3.776 3 C 0.063 3.937 4 O -0.563 6.563 5 N -0.729 5.729 6 C 0.523 3.477 7 O -0.522 6.522 8 C -0.072 4.072 9 C -0.177 4.177 10 C -0.081 4.081 11 C -0.240 4.240 12 C -0.108 4.108 13 C -0.160 4.160 14 C 0.129 3.871 15 C -0.455 4.455 16 H 0.075 0.925 17 C 0.077 3.923 18 N -0.796 5.796 19 Si 0.901 3.099 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.273 1.273 23 C -0.066 4.066 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.103 4.103 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.373 0.627 35 H 0.396 0.604 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.278 0.722 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.303 0.366 -17.132 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.137 3.863 3 C -0.016 4.016 4 O -0.367 6.367 5 N -0.384 5.384 6 C 0.311 3.689 7 O -0.396 6.396 8 C -0.112 4.112 9 C -0.179 4.179 10 C -0.100 4.100 11 C -0.259 4.259 12 C -0.126 4.126 13 C -0.179 4.179 14 C 0.127 3.873 15 C -0.485 4.485 16 H 0.093 0.907 17 C -0.140 4.140 18 N -0.422 5.422 19 Si 0.726 3.274 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.198 1.198 23 C -0.067 4.067 24 C -0.135 4.135 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.121 4.121 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.219 0.781 35 H 0.231 0.769 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.562 0.332 -16.819 17.717 hybrid contribution -0.292 -0.232 -0.404 0.550 sum 5.270 0.100 -17.222 18.011 Atomic orbital electron populations 1.22192 0.92470 1.03345 1.03867 1.19040 0.93963 0.90305 0.82992 1.22684 0.81359 0.96347 1.01196 1.86497 1.19402 1.33065 1.97763 1.46219 1.55028 1.32389 1.04735 1.21115 0.79361 0.84556 0.83846 1.90590 1.36583 1.26037 1.86408 1.20270 0.99663 1.00462 0.90759 1.19039 0.95909 1.04052 0.98855 1.20300 0.97402 0.96388 0.95878 1.20300 0.98192 1.06323 1.01080 1.20669 0.94945 0.98443 0.98581 1.21293 1.00037 0.97572 0.98996 1.17330 0.89361 0.89884 0.90744 1.19496 1.14306 1.18166 0.96542 0.90736 1.25867 0.97777 0.95753 0.94618 1.69832 1.31653 1.34108 1.06591 0.86378 0.81046 0.79041 0.80964 1.18512 1.20082 1.19772 1.19780 0.98543 0.93821 0.94537 1.20992 0.99724 0.93974 0.98772 1.21106 0.99455 0.99867 0.93039 1.21125 1.00787 0.94457 0.98061 1.21093 0.99801 0.94724 0.98144 1.20953 0.99024 0.99707 0.92397 0.91740 0.89006 0.92115 0.93588 0.90525 0.78070 0.76899 0.88723 0.90686 0.89832 0.89764 0.89673 0.86572 0.91090 0.85837 0.86041 0.86317 0.86218 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.38 37.16 0.31 -2.04 16 2 C 0.22 3.14 0.68 -132.97 -0.09 3.05 16 3 C 0.06 0.85 5.13 37.16 0.19 1.04 16 4 O -0.56 -7.36 12.91 -35.23 -0.45 -7.81 16 5 N -0.73 -11.21 4.72 -48.69 -0.23 -11.44 16 6 C 0.52 10.06 6.86 -10.99 -0.08 9.99 16 7 O -0.52 -11.74 12.24 5.56 0.07 -11.67 16 8 C -0.07 -1.42 5.18 -29.04 -0.15 -1.57 16 9 C -0.18 -4.25 4.43 -103.91 -0.46 -4.71 16 10 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 11 C -0.24 -5.63 10.05 -39.29 -0.39 -6.02 16 12 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 13 C -0.16 -4.28 8.69 -38.87 -0.34 -4.62 16 14 C 0.13 3.44 5.56 -106.83 -0.59 2.85 16 15 C -0.46 -11.92 8.14 -37.74 -0.31 -12.22 16 16 H 0.07 1.90 6.67 -52.49 -0.35 1.55 16 17 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 18 N -0.80 -20.61 10.95 55.55 0.61 -20.00 16 19 Si 0.90 18.89 29.59 -169.99 -5.03 13.86 16 20 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C -0.07 -0.82 4.51 -104.62 -0.47 -1.30 16 24 C -0.12 -1.35 8.96 -39.59 -0.35 -1.70 16 25 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 26 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 27 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 28 C -0.10 -1.14 8.92 -39.58 -0.35 -1.49 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.62 6.17 -51.93 -0.32 1.30 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.52 6.51 -51.93 -0.34 0.18 16 33 H 0.08 1.26 6.17 -51.93 -0.32 0.94 16 34 H 0.37 3.36 9.12 45.56 0.42 3.77 16 35 H 0.40 5.29 6.67 -40.82 -0.27 5.02 16 36 H 0.09 1.85 7.08 -51.93 -0.37 1.48 16 37 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 38 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 41 H 0.12 3.20 6.20 -52.49 -0.33 2.88 16 42 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 43 H 0.12 1.35 6.71 -52.49 -0.35 1.00 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 47 H 0.12 1.21 6.17 -52.49 -0.32 0.88 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -31.44 380.65 -9.94 -41.38 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -5.49 Total: 16.93 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -5.15 Total: -26.98 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.38 Total: -31.44 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.39 Total: -19.48 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.44 -9.94 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855086611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.399 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds